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ORCIDPEARC 2018: Pittsburgh, PA, USA
- Sergiu Sanielevici:
Proceedings of the Practice and Experience on Advanced Research Computing, PEARC 2018, Pittsburgh, PA, USA, July 22-26, 2018. ACM 2018
Facilitation of Advanced Computing Infrastructure
- John-Paul Robinson, Thomas Anthony, Ravi Tripathi, Sara A. Sims
, Kristina M. Visscher, Purushotham V. Bangalore:
Analyzing the Human Connectome Project Datasets using GPUs: The Anatomy of a Science Engagement. 1:1-1:6 - Yige Wang, Ruizhu Huang, Weijia Xu:
Authentication with User Driven Web Application for Accessing Remote Resources. 2:1-2:7 - Joseph P. White, Alexander D. Kofke, Robert L. DeLeon, Martins Innus, Matthew D. Jones, Thomas R. Furlani:
Automatic Characterization of HPC Job Parallel Filesystem I/O Patterns. 3:1-3:8 - Sean B. Cleveland, Rion Dooley, David Perry, Joe Stubbs, John M. Fonner, Gwen A. Jacobs:
Building Science Gateway Infrastructure in the Middle of the Pacific and Beyond: Experiences using the Agave Deployer and Agave Platform to Build Science Gateways. 4:1-4:8 - Joe Breen, Lincoln Bryant, Gabriele Carcassi, Jiahui Chen, Robert W. Gardner, Ryan Harden, Martin Izdimirski, Robert Killen, Ben Kulbertis, Shawn McKee, Benedikt Riedel, Jason Stidd, Luan Truong, Ilija Vukotic:
Building the SLATE Platform. 5:1-5:7 - Zebula Sampedro, Aaron Holt, Thomas Hauser:
Continuous Integration and Delivery for HPC: Using Singularity and Jenkins. 6:1-6:6 - Mami Hayashida, P. Sergio Rivera, James Griffioen, Zongming Fei, Yongwook Song:
Debugging SDN in HPC Environments. 7:1-7:8 - Andrea Zonca, Robert S. Sinkovits:
Deploying Jupyter Notebooks at scale on XSEDE resources for Science Gateways and workshops. 8:1-8:7 - Benedikt Riedel, Boris Bauermeister, Lincoln Bryant, Jan Conrad, Patrick de Perio, Robert W. Gardner, Luca Grandi, Francesco Lombardi, Alfio Rizzo, Gabriella Sartorelli, Marco Selvi, Evan Shockley, Judith Stephen, Suchandra Thapa, Christopher D. Tunnell:
Distributed Data and Job Management for the XENON1T Experiment. 9:1-9:8 - Fugang Wang, Gregor von Laszewski, Timothy Whitson, Geoffrey C. Fox, Thomas R. Furlani, Robert L. DeLeon, Steven M. Gallo:
Evaluating the Scientific Impact of XSEDE. 10:1-10:8 - Pankaj Saha, Angel Beltre, Piotr Uminski, Madhusudhan Govindaraju:
Evaluation of Docker Containers for Scientific Workloads in the Cloud. 11:1-11:8 - Jonathon Anderson, Thomas Hauser:
Federating Identity Management for a Regional HPC Resource. 12:1-12:6 - Evan F. Bollig, James C. Wilgenbusch:
From Bare Metal to Virtual: Lessons Learned when a Supercomputing Institute Deploys its First Cloud. 13:1-13:8 - Rachana Ananthakrishnan, Ben Blaiszik, Kyle Chard, Ryan Chard, Brendan McCollam, Jim Pruyne, Stephen Rosen, Steven Tuecke, Ian T. Foster:
Globus Platform Services for Data Publication. 14:1-14:7 - Suchandra Thapa, Robert W. Gardner, Kenneth Richard Herner, Dirk Hufnagel, David Lesny, Mats Rynge:
Homogenizing OSG and XSEDE: Providing Access to XSEDE Allocations through OSG Infrastructure. 15:1-15:7 - Mehmet Belgin, Trever C. Nightingale, David A. Mercer, Fang (Cherry) Liu, Peter Wan, Andre C. McNeill, Rubén Lara, Paul Manno, Neil Bright:
ICE: A Federated Instructional Cluster Environment for Georgia Tech. 16:1-16:7 - Michael B. Milligan:
Jupyter as Common Technology Platform for Interactive HPC Services. 17:1-17:6 - Evan F. Bollig, Graham T. Allan, Benjamin J. Lynch, Yectli A. Huerta, Mathew Mix, Edward A. Munsell, Raychel M. Benson, Brent Swartz:
Leveraging OpenStack and Ceph for a Controlled-Access Data Cloud. 18:1-18:7 - Scott A. Valcourt:
Major Factors in Science DMZ Deployment at Small Institutions. 19:1-19:8 - Anita M. Orendt, Erin Shaw:
Measuring the Impact of Facilitation Effort. 20:1-20:7 - Jeremy Fischer, Brian W. Beck, Sanjana Sudarshan, George W. Turner, Winona Snapp-Childs, Craig A. Stewart, David Y. Hancock:
Methodologies and practices for adoption of a novel national research environment. 21:1-21:7 - P. Sergio Rivera, James Griffioen, Zongming Fei, Mami Hayashida, Pinyi Shi, Bhushan Chitre, Jacob Chappell, Yongwook Song, Lowell Pike, Charles Carpenter, Hussamuddin Nasir:
Navigating the Unexpected Realities of Big Data Transfers in a Cloud-based World. 22:1-22:8 - Trey Dockendorf, Douglas Johnson, Troy Baer:
Scaling Puppet and Foreman for HPC. 23:1-23:6 - Alex Withers, Brian Bockelman, Derek Weitzel, Duncan A. Brown, Jeff Gaynor, Jim Basney, Todd Tannenbaum, Zach Miller:
SciTokens: Capability-Based Secure Access to Remote Scientific Data. 24:1-24:8 - Nikolay A. Simakov, Robert L. DeLeon, Martins D. Innus, Matthew D. Jones, Joseph P. White, Steven M. Gallo, Abani K. Patra, Thomas R. Furlani:
Slurm Simulator: Improving Slurm Scheduler Performance on Large HPC systems by Utilization of Multiple Controllers and Node Sharing. 25:1-25:8 - Jeremy W. Nicklas, Douglas Johnson, Shameema Oottikkal, Eric Franz, Brian McMichael, Alan Chalker, David E. Hudak:
Supporting distributed, interactive Jupyter and RStudio in a scheduled HPC environment with Spark using Open OnDemand. 26:1-26:8 - Maxwell Burnette, Rob Kooper, J. D. Maloney, Gareth S. Rohde, Jeffrey A. Terstriep, Craig Willis, Noah Fahlgren, Todd C. Mockler, Maria Newcomb, Vasit Sagan, Pedro Andrade-Sanchez, Nadia Shakoor, Paheding Sidike, Rick Ward, David S. LeBauer:
TERRA-REF Data Processing Infrastructure. 27:1-27:7 - Rion Dooley, Steven R. Brandt, John M. Fonner:
The Agave Platform: An Open, Science-as-a-Service Platform for Digital Science. 28:1-28:8 - Larry Smarr, Camille Crittenden, Thomas A. DeFanti, John Graham, Dmitry Mishin, Richard Moore, Philip M. Papadopoulos, Frank Würthwein:
The Pacific Research Platform: Making High-Speed Networking a Reality for the Scientist. 29:1-29:8 - Lincoln Bryant, Jeremy Van, Benedikt Riedel, Robert W. Gardner, Jose Caballero Bejar, John Hover, Ben Tovar, Kenyi Hurtado, Douglas Thain:
VC3: A Virtual Cluster Service for Community Computation. 30:1-30:8 - W. Cyrus Proctor, Mike Packard, Anagha Jamthe, Richard Cardone, Joseph Stubbs:
Virtualizing the Stampede2 Supercomputer with Applications to HPC in the Cloud. 31:1-31:6 - Richard H. Grant, Stuart D. Smith, Stephen Lien Harrell, Alex Younts, Preston M. Smith:
Windows-based Workflows on Linux-based Beowulf Clusters. 32:1-32:5
Applications of Advanced Computing Infrastructure
- Ruizhu Huang, Weijia Xu, Silvia Liverani, Dave Hiltbrand, Ann E. Stapleton:
A Case Study of R Performance Analysis and Optimization. 33:1-33:6 - Kang-Pyo Lee, Spencer J. Kuhl, Henry Jeremy Bockholt, Benjamin P. Rogers, Daniel A. Reed:
A Cloud-Based Scientific Gateway for Internet of Things Data Analytics. 34:1-34:8 - Guangchen Ruan, Tassie Gniady, David Kloster, Eric A. Wernert, Esen Tuna:
A Computational Notebook Approach to Large-scale Text Analysis: Balancing Accessibility with Scalability. 35:1-35:8 - Mark S. Hisle, Maxwell S. Meier, David M. Toth:
Accelerating AutoDock Vina with Containerization. 36:1-36:5 - Dave Turner, Dan Andresen, Kyle Hutson, Adam Tygart:
Application Performance on the Newest Processors and GPUs. 37:1-37:7 - Sandeep Puthanveetil Satheesan, Jay Alameda, Shannon Bradley, Michael C. Dietze, Benjamin Galewsky, Gregory Jansen, Rob Kooper, Praveen Kumar, Jong Lee, Richard Marciano, Luigi Marini, Barbara S. Minsker, Christopher M. Navarro, Arthur Schmidt, Marcus Slavenas, William C. Sullivan, Bing Zhang, Yan Zhao, Inna Zharnitsky, Kenton McHenry:
Brown Dog: Making the Digital World a Better Place, a Few Files at a Time. 38:1-38:8 - Zhong Wang, Marcus A. Christie, Eroma Abeysinghe, Tinyi Chu, Suresh Marru, Marlon E. Pierce, Charles G. Danko:
Building a Science Gateway For Processing and Modeling Sequencing Data Via Apache Airavata. 39:1-39:7 - Luigi Marini, Indira Gutierrez-Polo, Rob Kooper, Sandeep Puthanveetil Satheesan, Maxwell Burnette, Jong Lee, Todd Nicholson, Yan Zhao, Kenton McHenry:
Clowder: Open Source Data Management for Long Tail Data. 40:1-40:8 - Yu Li, Xiaohong Zhang, Ashwin Trikuta Srinath, Rachel B. Getman, Linh Bao Ngo:
Combining HPC and Big Data Infrastructures in Large-Scale Post-Processing of Simulation Data: A Case Study. 41:1-41:7 - Olesya Sarajlic, Xiaochun He, Semir Sarajlic, Tingcun Wei:
Computational Challenges and Opportunities of Simulating Cosmic Ray Showers at Global Scale. 42:1-42:7 - Maxim Belkin, Roland Haas, Galen Wesley Arnold, Hon Wai Leong, Eliu A. Huerta, David Lesny, Mark S. Neubauer:
Container solutions for HPC Systems: A Case Study of Using Shifter on Blue Waters. 43:1-43:8 - Eric Shook, Davide Del Vento, Andrea Zonca, Jun Wang:
GISandbox: A Science Gateway for Geospatial Computing. 44:1-44:7 - Guangchen Ruan, Eric A. Wernert, Tassie Gniady, Esen Tuna, William R. Sherman:
High Performance Photogrammetry for Academic Research. 45:1-45:8 - Larry L. Biehl, Lan Zhao, Carolyn Ellis, Rajesh Kalyanam, Robert Campbell, Carol X. Song:
Introducing Research Concepts to Middle School Students via a Geospatial Science Gateway. 46:1-46:5 - Eduardo Ponce, Brittany Stephenson, Suzanne M. Lenhart, Judy Day, Gregory D. Peterson:
PaPaS: A Portable, Lightweight, and Generic Framework for Parallel Parameter Studies. 47:1-47:8 - Liya Wang, Zhenyuan Lu, Peter Van Buren, Doreen Ware:
SciApps: a Bioinformatics Workflow Platform Powered by XSEDE and CyVerse. 48:1-48:5 - Don Krieger, Paul Shepard, Ben Zusman, Anirban Jana, David O. Okonkwo:
Seamless Utilization of Heterogeneous XSede Resources to Accelerate Processing of a High Value Functional Neuroimaging Dataset. 49:1-49:8 - Kyle Levi, Mats Rynge, Eroma Abeysinghe, Robert A. Edwards:
Searching the Sequence Read Archive using Jetstream and Wrangler. 50:1-50:7 - Sorin Adam Matei, Rajesh Kalyanam, Lan Zhao, Carol X. Song:
Social Media Modeling of Human Behavior in Natural Emergencies. 51:1-51:8 - Subhashini Sivagnanam, Kenneth Yoshimoto, Nicholas T. Carnevale, Amit Majumdar:
The Neuroscience Gateway: Enabling Large Scale Modeling and Data Processing in Neuroscience. 52:1-52:7 - Nancy Wilkins-Diehr, Michael G. Zentner, Marlon E. Pierce, Maytal Dahan, Katherine A. Lawrence, Linda B. Hayden, Nayiri Mullinix:
The Science Gateways Community Institute at Two Years. 53:1-53:8 - Manu Shantharam, Mahidhar Tatineni, Dong Ju Choi, Amitava Majumdar:
Understanding I/O Bottlenecks and Tuning for High Performance I/O on Large HPC Systems: A Case Study. 54:1-54:6 - James C. Phillips:
What You Should Know About NAMD and Charm++ But Were Hoping to Ignore. 55:1-55:6
Visualization and Data Analytics
- Ishtar Nyawira, Kristi Bushman:
A Simplified Approach to Deep Learning for Image Segmentation. 56:1-56:8 - Yanzhe Cheng, Fang (Cherry) Liu, Shan Jing, Weijia Xu, Duen Horng Chau:
Building Big Data Processing and Visualization Pipeline through Apache Zeppelin. 57:1-57:7 - Dawei Mu, Pietro Cicotti, Yifeng Cui, En-Jui Lee, Florin-James Langer, Junyi Qiu, Haemin Jenny Lee, Cody Morrin:
Deep Learning for Seismic Template Recognition. 58:1-58:6 - Zhe Zhang, Brian Bockelman, Derek Weitzel, David Swanson:
Discovering Job Preemptions in the Open Science Grid. 59:1-59:8 - Andrea L. Ogier, Anne M. Brown, Jonathan L. Petters, Amr Hilal, Nathaniel Porter:
Enhancing Collaboration Across the Research Ecosystem: Using Libraries as Hubs for Discipline-Specific Data Experts. 60:1-60:6 - Rajiv Khadka, James H. Money, Amy Banic:
Evaluation of Scientific Workflow Effectiveness for a Distributed Multi-User Multi-Platform Support System for Collaborative Visualization. 61:1-61:8 - James H. Money, Marko Sterbentz, Nathan Morrical, Thomas Szewczyk, Landon Woolley:
GPGPU Enabled Ray Directed Adaptive Volume Visualization for High Density Scans. 62:1-62:7 - William R. Sherman, James H. Money, Eric T. Whiting, Shane Grover:
IQ-Stations: Advances in State-of-the-Art Low Cost Immersive Displays for Research and Development. 63:1-63:5 - XiaoPeng Lu, Jiaming Qu, YongXing Jiang, Yanbing Zhao:
Should I Invest it?: Predicting Future Success of Yelp Restaurants. 64:1-64:6 - Ishtar Nyawira, Kristi Bushman, Iris Qian, Annie Zhang:
Understanding Neural Pathways in Zebrafish through Deep Learning and High Resolution Electron Microscope Data. 65:1-65:8
Workforce Development and Diversity
- Susan Mehringer, Tom Maiden, Lorna Rivera, John Urbanic:
Creating Effective Online Training Videos from Live Training Event Recordings. 66:1-66:6 - Derek L. Morris III, Matthew D. Hill, Lilshay M. Rogers, Alma D. Salisbury, Hagen C. Hodgkins, Sincere J. Ponton, Linda B. Hayden, Jeffrey A. Wood:
Establishing Paradigms for Modifying and Developing the Workforce Development Section of the Science Gateways Community Institute Site. 67:1-67:4 - Erin Shaw, Cesar Sul:
Evaluation of ACI Training on User Preparedness. 68:1-68:6 - Benjamin P. Rogers, Gabriella A. Perez:
Facilitating Technical Compliance Through the Development of a New IT Role. 69:1-69:7 - Stephen Lien Harrell, Marisa Brazil, Alex Younts, Daniel T. Dietz, Preston M. Smith, Erik Gough, Xiao Zhu, Gladys K. Andino:
Mentoring Undergraduates into Cyber-Facilitator Roles. 70:1-70:7 - Henry Neeman, Hussein M. Al-Azzawi, Aaron Bergstrom, Zoe K. Braiterman, Dana Brunson, Dirk Colbry, Eduardo Colmenares, Akilah N. Fuller, Sandra Gesing, Maria Kalyvaki, Claire Mizumoto, Jeho Park, Anita Z. Schwartz, Jason L. Simms, Rustomji Vania:
Progress Update on the Development and Implementation of the Advanced Cyberinfrastructure Research & Education Facilitators Virtual Residency Program. 71:1-71:7 - Jason C. Christopher, Aaron Culich, Quinn Dombrowski, Debra McCaffrey, Amy Neeser, Andrew Wiedlea:
Research Facilitation on a Budget. 72:1-72:5 - Kelly P. Gaither, Rosalia Gomez, Helen Turner, Lizanne DeStefano, Lorna Rivera, Marques Bland:
The Role Cultural Competency Plays in Teaching Data Science. 73:1-73:7 - Hannah K. Ricketts, Alexa M. Salsbury, David R. Bevan, Anne M. Brown:
Using Immersive Visualization Environments to Engage Students in Hands-On Learning. 74:1-74:5 - Craig A. Stewart, Marion Krefeldt:
Your Good Health is a Workforce Issue. 75:1-75:8
Posters
- Yinzhi Wang, Sudhakar Pamidighantam, Sean Yaw, Eroma Abeysinghe, Suresh Marru, Marcus Christie, Kevin M. Ellett, Marlon E. Pierce, Richard S. Middleton:
A New Science Gateway to Provide Decision Support on Carbon Capture and Storage Technologies. 76:1-76:3 - Noah Howard, Nicholas Colella, Kasey Legaard, Saritha Nellutla, Evan McCoy, Larry Whitsel, Chris Wilson, Bruce Segee:
Adventures of Two Student Research Computing Facilitators. 77:1-77:4 - Harsha Phulwani, Madrina Thapa, Suresh Marru, Marlon E. Pierce, Sudhakar Pamidighantam, Marcus Christie:
Apache Airavata Resource Allocation System: A Tool for Allocating Resources in Science Gateways. 78:1-78:4 - Sean Deitrich, Jacob Czech, Alexander Ropelewski, Arthur W. Wetzel, Greg Hood, Derek Simmel, Marcel Bruchez, Simon C. Watkins, Alan M. Watson:
Applying iRODS to the Brain Image Library. 79:1-79:4 - Megan F. McCracken:
Artificial Neural Networks in Fluid Dynamics: A Novel Approach to the Navier-Stokes Equations. 80:1-80:4 - Samuel Cupp, Steven R. Brandt:
Automated synchronization and boundary condition application for the Cactus Framework. 81:1-81:3 - Judith D. Gardiner, Karen A. Tomko, Myoung-Jong Noh, Ian M. Howat:
Code Optimization and Stabilization for a High-Resolution Terrain Generation Application. 82:1-82:3 - Manal Bayousef, Hongmei Chi:
Computational Investigations of Optimal Scrambled Halton Sequences. 83:1-83:4 - Kevin Dice, Cortez Gray, George Walker, Cody Baldwin, Daniel Andresen:
CUDA-Accelerated Simulation of Brownian Dynamics. 84:1-84:3 - Amirhessam Tahmassebi, Amir H. Gandomi, Ian McCann, Mieke H. J. Schulte, Anna E. Goudriaan, Anke Meyer-Baese:
Deep Learning in Medical Imaging: fMRI Big Data Analysis via Convolutional Neural Networks. 85:1-85:4 - Stephen Paul Adithela, Marcus Christie, Suresh Marru, Marlon E. Pierce:
Django Content Management System Evaluation and Integration with Apache Airavata. 86:1-86:4 - Sachin Kariyattin, Suresh Marru, Marlon E. Pierce:
Evaluating NextCloud as a File Storage for Apache Airavata. 87:1-87:4 - Yehia Arafa, Atanu Barai, Mai Zheng, Abdel-Hameed A. Badawy:
Evaluating the Fault Tolerance Performance of HDFS and Ceph. 88:1-88:3 - Nitin Sukhija, Arun K. Datta, Sonny Sevin, Eric Coulter:
Grid Technology for Supporting Health Education and Measuring the Health Outcome. 89:1-89:4 - Beth Lynn Eicher, Steven Solomon, Shawn Hall:
High Performance Computing Evaluate And Plan. 90:1-90:3 - Meysam Ghaffari, Judith Wang:
Integrating Travel and Epidemic Models through Computational Analysis. 91:1-91:3 - Temilola Aderibigbe, Hongmei Chi:
Investigation of Florida Housing Prices using Predictive Time Series Model. 92:1-92:4 - Rob Light, Alina Banerjee, Ester Soriano:
Managing Allocations on Your Research Resources?: XRAS is here to help! 93:1-93:4 - Cameron W. Smith, Eroma Abeysinghe, Suresh Marru, Kenneth E. Jansen:
PHASTA Science Gateway for High Performance Computational Fluid Dynamics. 94:1-94:4 - Karen Canas, Brandon Ubiera, Xinlian Liu, Yanling Liu:
Scalable Biomedical Image Synthesis with GAN. 95:1-95:3 - Semir Sarajlic, Julien Chastang, Suresh Marru, Jeremy Fischer, Mike Lowe:
Scaling JupyterHub Using Kubernetes on Jetstream Cloud: Platform as a Service for Research and Educational Initiatives in the Atmospheric Sciences. 96:1-96:4 - Joseph D. Madison, Eroma Abeysinghe, Sudhakar Pamidighantam, Suresh Marru, Marcus Christie, Douglas M. Jennewein, Marlon E. Pierce:
Science Gateway Implementation at the University of South Dakota: Applications in Research and Education. 97:1-97:4 - Sai Susheel Sunkara, Chet Langin, Marlon E. Pierce, Eroma Abeysinghe, Sudhakar Pamidighantam, Suresh Marru:
Simplifying Access to Campus Resources at Southern Illinois University with a Science Gateway. 98:1-98:4 - Marlon E. Pierce, Suresh Marru, Eroma Abeysinghe, Sudhakar Pamidighantam, Marcus Christie, Dimuthu Wannipurage:
Supporting Science Gateways Using Apache Airavata and SciGaP Services. 99:1-99:4 - Eroma Abeysinghe, Michal Brylinski, Marcus Christie, Suresh Marru, Marlon E. Pierce:
The CSBG - LSU Gateway: Web based Hosted Gateway for Computational System Biology Application Tools from Louisiana State University. 100:1-100:4 - Zachariah Miller, Nitin Sukhija, Ritu Arora, Alexander Gessinger:
Towards a Parallel User Tool (ParDP) for Automatic Data Partitioning of Relational Databases. 101:1-101:3 - Nathan M. Wilson, Suresh Marru, Eroma Abeysinghe, Marcus A. Christie, Gabriel D. Maher, Adam R. Updegrove, Marlon E. Pierce, Alison L. Marsden:
Using a Science Gateway to Deliver SimVascular Software as a Service for Classroom Instruction. 102:1-102:4 - Huan Chen, Chris Fietkiewicz:
Version Control Graphical Interface for Open OnDemand. 103:1-103:4
Visualization Showcase
- Greg Foss, An Nguyen, Victor Ocaña, Patrick Heimbach:
Arctic Ocean-Sea Ice Interactions. 104:1-104:2 - Greg Foss, Andrew J. Solis, Sarang Bhadsavle, Wendell Horton, Lee Leonard:
Plasma Simulation Data Through the Hololens. 105:1-105:2 - David Bock, Brian F. Jewett:
Visual Representation of the Joplin Tornadic Storm. 106:1-106:3 - Som Dutta, Mark W. Van Moer, Paul F. Fischer, Marcelo H. García:
Visualization of the Bulle-Effect at River Bifurcations. 107:1-107:4 - Greg Foss, Wendell Horton, Lee Leonard:
Visualizations of Mistral and Tri Alpha Plasmas. 108:1-108:2
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