default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDMichal Brylinski
Person information
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2024
[j32]Mengmeng Liu, Gopal Srivastava, J. Ramanujam
, Michal Brylinski:
Insights from Augmented Data Integration and Strong Regularization in Drug Synergy Prediction with SynerGNet. Mach. Learn. Knowl. Extr. 6(3): 1782-1797 (2024)- 2022
- [c3]Supratik Mukhopadhyay, Michal Brylinski, Adam Bess, Frej Berglind, Chris Galliano, Patrick F. McGrew:
DeepDrug: Applying AI for the Advancement of Drug Discovery. COMSNETS 2022: 667-674 - 2021
- [j31]Guannan Liu, Manali Singha, Limeng Pu, Prasanga Neupane, Joseph Feinstein, Hsiao-Chun Wu, J. Ramanujam, Michal Brylinski:
GraphDTI: A robust deep learning predictor of drug-target interactions from multiple heterogeneous data. J. Cheminformatics 13(1): 58 (2021) - 2020
- [j30]Wentao Shi, Jeffrey Mitchell Lemoine, Abd-El-Monsif A. Shawky, Manali Singha, Limeng Pu, Shuangyan Yang, J. Ramanujam, Michal Brylinski:
BionoiNet: ligand-binding site classification with off-the-shelf deep neural network. Bioinform. 36(10): 3077-3083 (2020)
2010 – 2019
- 2019
- [j29]Misagh Naderi, Jeffrey Mitchell Lemoine, Rajiv Gandhi Govindaraj, Omar Kana, Wei Pan Feinstein, Michal Brylinski:
Binding site matching in rational drug design: algorithms and applications. Briefings Bioinform. 20(6): 2167-2184 (2019) - [j28]Omar Kana, Michal Brylinski:
Elucidating the druggability of the human proteome with eFindSite. J. Comput. Aided Mol. Des. 33(5): 509-519 (2019) - [j27]Limeng Pu, Rajiv Gandhi Govindaraj, Jeffrey Mitchell Lemoine, Hsiao-Chun Wu, Michal Brylinski:
DeepDrug3D: Classification of ligand-binding pockets in proteins with a convolutional neural network. PLoS Comput. Biol. 15(2) (2019) - [c2]Eroma Abeysinghe, Michal Brylinski, Marcus Christie, Suresh Marru, Marlon E. Pierce:
LSU Computational System Biology Gateway for Education. PEARC 2019: 112:1-112:4 - 2018
- [j26]Rajiv Gandhi Govindaraj, Michal Brylinski:
Comparative assessment of strategies to identify similar ligand-binding pockets in proteins. BMC Bioinform. 19(1): 91:1-91:17 (2018) - [c1]Eroma Abeysinghe, Michal Brylinski, Marcus Christie, Suresh Marru, Marlon E. Pierce:
The CSBG - LSU Gateway: Web based Hosted Gateway for Computational System Biology Application Tools from Louisiana State University. PEARC 2018: 100:1-100:4 - 2017
- [j25]Surabhi Maheshwari, Michal Brylinski:
Across-proteome modeling of dimer structures for the bottom-up assembly of protein-protein interaction networks. BMC Bioinform. 18(1): 257:1-257:14 (2017) - [j24]Tairan Liu, Misagh Naderi, Chris Alvin, Supratik Mukhopadhyay, Michal Brylinski:
Break Down in Order To Build Up: Decomposing Small Molecules for Fragment-Based Drug Design with eMolFrag. J. Chem. Inf. Model. 57(4): 627-631 (2017) - 2016
- [j23]Chen Wang, Gang Hu, Kui Wang, Michal Brylinski, Lei Xie, Lukasz A. Kurgan:
PDID: database of molecular-level putative protein-drug interactions in the structural human proteome. Bioinform. 32(4): 579-586 (2016) - [j22]Yun Ding, Ye Fang, Juana Moreno, J. Ramanujam, Mark Jarrell, Michal Brylinski:
Assessing the similarity of ligand binding conformations with the Contact Mode Score. Comput. Biol. Chem. 64: 403-413 (2016) - [j21]Misagh Naderi, Chris Alvin, Yun Ding, Supratik Mukhopadhyay, Michal Brylinski:
A graph-based approach to construct target-focused libraries for virtual screening. J. Cheminformatics 8(1): 14:1-14:16 (2016) - 2015
- [j20]Michal Brylinski:
Is the growth rate of Protein Data Bank sufficient to solve the protein structure prediction problem using template-based modeling? Bio Algorithms Med Syst. 11(1): 1-7 (2015) - [j19]Surabhi Maheshwari, Michal Brylinski:
Predicting protein interface residues using easily accessible on-line resources. Briefings Bioinform. 16(6): 1025-1034 (2015) - [j18]Yun Ding, Ye Fang, Wei Pan Feinstein, Jagannathan Ramanujam, David M. Koppelman, Juana Moreno, Michal Brylinski, Mark Jarrell:
GeauxDock: A novel approach for mixed-resolution ligand docking using a descriptor-based force field. J. Comput. Chem. 36(27): 2013-2026 (2015) - [j17]Wei Pan Feinstein, Michal Brylinski:
Calculating an optimal box size for ligand docking and virtual screening against experimental and predicted binding pockets. J. Cheminformatics 7: 18:1-18:10 (2015) - 2014
- [j16]Michal Brylinski:
eMatchSite: Sequence Order-Independent Structure Alignments of Ligand Binding Pockets in Protein Models. PLoS Comput. Biol. 10(9) (2014) - 2013
- [j15]Michal Brylinski, Wei Pan Feinstein:
eFindSite: Improved prediction of ligand binding sites in protein models using meta-threading, machine learning and auxiliary ligands. J. Comput. Aided Mol. Des. 27(6): 551-567 (2013) - [j14]Michal Brylinski:
Nonlinear Scoring Functions for Similarity-Based Ligand Docking and Binding Affinity Prediction. J. Chem. Inf. Model. 53(11): 3097-3112 (2013) - 2010
- [j13]Shashi Bhushan Pandit, Michal Brylinski, Hongyi Zhou, Mu Gao, Adrian K. Arakaki, Jeffrey Skolnick:
PSiFR: an integrated resource for prediction of protein structure and function. Bioinform. 26(5): 687-688 (2010) - [j12]Michal Brylinski, Jeffrey Skolnick:
Q-DockLHM: Low-resolution refinement for ligand comparative modeling. J. Comput. Chem. 31(5): 1093-1105 (2010) - [j11]Michal Brylinski, Jeffrey Skolnick:
Comprehensive Structural and Functional Characterization of the Human Kinome by Protein Structure Modeling and Ligand Virtual Screening. J. Chem. Inf. Model. 50(10): 1839-1854 (2010)
2000 – 2009
- 2009
- [j10]Jeffrey Skolnick, Michal Brylinski:
FINDSITE: a combined evolution/structure-based approach to protein function prediction. Briefings Bioinform. 10(4): 378-391 (2009) - [j9]Michal Brylinski, Jeffrey Skolnick:
FINDSITELHM: A Threading-Based Approach to Ligand Homology Modeling. PLoS Comput. Biol. 5(6) (2009) - 2008
- [j8]Michal Brylinski, Jeffrey Skolnick:
Q-Dock: Low-resolution flexible ligand docking with pocket-specific threading restraints. J. Comput. Chem. 29(10): 1574-1588 (2008) - 2007
- [j7]Michal Brylinski, Leszek Konieczny, Irena Roterman:
Is the protein folding an aim-oriented process? Human haemoglobin as example. Int. J. Bioinform. Res. Appl. 3(2): 234-260 (2007) - [j6]Michal Brylinski, Katarzyna Prymula, Wiktor Jurkowski, Marek Kochanczyk, Ewa Stawowczyk, Leszek Konieczny, Irena Roterman:
Prediction of Functional Sites Based on the Fuzzy Oil Drop Model. PLoS Comput. Biol. 3(5) (2007) - 2006
- [j5]Michal Brylinski, Leszek Konieczny, Irena Roterman:
Hydrophobic collapse in (in silico) protein folding. Comput. Biol. Chem. 30(4): 255-267 (2006) - [j4]Leszek Konieczny, Michal Brylinski, Irena Roterman:
Gauss-Function-Based Model of Hydrophobicity Density in Proteins. Silico Biol. 6(1-2): 15-22 (2006) - [j3]Michal Brylinski, Marek Kochanczyk, Leszek Konieczny, Irena Roterman:
Sequence-Structure-Function Relation Characterized in silico. Silico Biol. 6(6): 589-600 (2006) - 2004
- [j2]Michal Brylinski, Wiktor Jurkowski, Leszek Konieczny, Irena Roterman:
Limited conformational space for early-stage protein folding simulation. Bioinform. 20(2): 199-205 (2004) - [j1]Michal Brylinski, Leszek Konieczny, Irena Roterman:
SPI - Structure predictability index for protein sequences. Silico Biol. 5(3): 227-237 (2004)
Coauthor Index
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from 
to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the 
of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from 
, 
, and 
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from 
.
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-11-07 21:34 CET by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
