- Simon Fishilevich, Ron Nudel
, Noa Rappaport, Rotem Hadar, Inbar Plaschkes, Tsippi Iny Stein, Naomi Rosen, Asher Kohn, Michal Twik, Marilyn Safran, Doron Lancet, Dana Cohen:
GeneHancer: genome-wide integration of enhancers and target genes in GeneCards. Database J. Biol. Databases Curation 2017: bax028 (2017) - Matheus Eloy Franco, Tamires Aparecida Bitencourt, Mozart Marins, Ana Lúcia Fachin:
In silico characterization of tandem repeats in Trichophyton rubrum and related dermatophytes provides new insights into their role in pathogenesis. Database J. Biol. Databases Curation 2017: bax035 (2017) - Cyrielle Gasc, Antony Constantin, Faouzi Jaziri, Pierre Peyret:
OCaPPI-Db: an oligonucleotide probe database for pathogen identification through hybridization capture. Database J. Biol. Databases Curation 2017: baw172 (2017) - Matthias P. Gerstl, Michael Hanscho, David E. Ruckerbauer, Jürgen Zanghellini, Nicole Borth:
CHOmine: an integrated data warehouse for CHO systems biology and modeling. Database J. Biol. Databases Curation 2017: bax034 (2017) - Jinghang Gu, Fuqing Sun, Longhua Qian, Guodong Zhou:
Chemical-induced disease relation extraction via convolutional neural network. Database J. Biol. Databases Curation 2017: bax024 (2017) - Anton Güntsch, Roger Hyam, Gregor Hagedorn, Simon Chagnoux, Dominik Röpert, Ana Casino, Gabi Droege, Falko Glöckler, Karsten Gödderz, Quentin Groom, Jana Hoffmann, Ayco Holleman, Matús Kempa, Hanna Koivula, Karol Marhold, Nicky Nicolson, Vincent S. Smith, Dagmar Triebel:
Actionable, long-term stable and semantic web compatible identifiers for access to biological collection objects. Database J. Biol. Databases Curation 2017: bax003 (2017) - Alba Gutiérrez-Sacristán, Àlex Bravo, Marta Portero-Tresserra, Olga Valverde, Antonio Armario, M. C. Blanco-Gandía, Adriana Farré, Lierni Fernández-Ibarrondo, Francina Fonseca, Jesús Giraldo, Angela Leis, Anna Mané, Miguel Angel Mayer, Sandra Montagud-Romero, Roser Nadal, Jordi Ortiz, Francisco Javier Pavon, Ezequiel Perez, Marta Rodríguez-Arias, Antonia Serrano, Marta Torrens, Vincent Warnault, Ferran Sanz, Laura I. Furlong:
Text mining and expert curation to develop a database on psychiatric diseases and their genes. Database J. Biol. Databases Curation 2017: bax043 (2017) - Jonas Hausen, Björn Scholz-Starke, Ulrich Burkhardt, Stephan Lesch, Sebastian Rick, David Russell, Martina Roß-Nickoll, Richard Ottermanns:
Edaphostat: interactive ecological analysis of soil organism occurrences and preferences from the Edaphobase data warehouse. Database J. Biol. Databases Curation 2017: bax080 (2017) - Sage T. Hellerstedt, Robert S. Nash, Shuai Weng, Kelley M. Paskov, Edith D. Wong, Kalpana Karra, Stacia R. Engel, J. Michael Cherry:
Curated protein information in the Saccharomyces genome database. Database J. Biol. Databases Curation 2017: bax011 (2017) - Steven T. Hill, Ramcharan Sudarsanam, John Henning, David Hendrix:
HopBase: a unified resource for Humulus genomics. Database J. Biol. Databases Curation 2017: bax009 (2017) - Christian Hinske, Felipe R. C. dos Santos, Daniel T. Ohara, Lucila Ohno-Machado, Simone Kreth, Pedro A. F. Galante:
MiRIAD update: using alternative polyadenylation, protein interaction network analysis and additional species to enhance exploration of the role of intragenic miRNAs and their host genes. Database J. Biol. Databases Curation 2017: bax053 (2017) - Gemma L. Holliday, Shoshana D. Brown, Eyal Akiva, David Mischel, Michael A. Hicks, John H. Morris, Conrad C. Huang, Elaine C. Meng, Scott C.-H. Pegg, Thomas E. Ferrin, Patricia C. Babbitt:
Biocuration in the structure-function linkage database: the anatomy of a superfamily. Database J. Biol. Databases Curation 2017: bax006 (2017) - Gemma L. Holliday, Shoshana D. Brown, Eyal Akiva, David Mischel, Michael A. Hicks, John H. Morris, Conrad C. Huang, Elaine C. Meng, Scott C.-H. Pegg, Thomas E. Ferrin, Patricia C. Babbitt:
Biocuration in the structure-function linkage database: the anatomy of a superfamily. Database J. Biol. Databases Curation 2017: bax045 (2017) - Wei Hu, Honglei Qiu, Jiacheng Huang, Michel Dumontier:
BioSearch: a semantic search engine for Bio2RDF. Database J. Biol. Databases Curation 2017: bax059 (2017) - Sajjad Janfaza, Maryam Banan Nojavani, Babak Khorsand, Maryam Nikkhah, Javad Zahiri:
Cancer Odor Database (COD): a critical databank for cancer diagnosis research. Database J. Biol. Databases Curation 2017: bax055 (2017) - Xiangying Jiang, Martin Ringwald, Judith A. Blake, Hagit Shatkay:
Effective biomedical document classification for identifying publications relevant to the mouse Gene Expression Database (GXD). Database J. Biol. Databases Curation 2017: bax017 (2017) - Keith A. Jolley, James E. Bray, Martin C. J. Maiden:
A RESTful application programming interface for the PubMLST molecular typing and genome databases. Database J. Biol. Databases Curation 2017: bax060 (2017) - Sook Jung, Taein Lee, Chun-Huai Cheng, Stephen P. Ficklin, Jing Yu, Jodi L. Humann, Dorrie Main:
Extension modules for storage, visualization and querying of genomic, genetic and breeding data in Tripal databases. Database J. Biol. Databases Curation 2017: bax092 (2017) - Alexander Junge, Jan C. Refsgaard, Christian Garde, Xiaoyong Pan, Alberto Santos, Ferhat Alkan, Christian Anthon, Christian von Mering, Christopher T. Workman, Lars Juhl Jensen, Jan Gorodkin:
RAIN: RNA-protein Association and Interaction Networks. Database J. Biol. Databases Curation 2017: baw167 (2017) - Kiran Kadam, Rajiv Karbhal, V. K. Jayaraman, Sangeeta Sawant, Urmila Kulkarni-Kale:
AllerBase: a comprehensive allergen knowledgebase. Database J. Biol. Databases Curation 2017: bax066 (2017) - Parul Kudtarkar, R. Andrew Cameron:
Echinobase: an expanding resource for echinoderm genomic information. Database J. Biol. Databases Curation 2017: bax074 (2017) - Steve Lefever, Jasper Anckaert, Pieter-Jan Volders, Manuel Luypaert, Jo Vandesompele, Pieter Mestdagh:
decodeRNA - predicting non-coding RNA functions using guilt-by-association. Database J. Biol. Databases Curation 2017: bax042 (2017) - Tian Li, Guo-Qing Pan, Charles R. Vossbrinck, Jin-Shan Xu, Chunfeng Li, Jie Chen, Meng-Xian Long, Ming Yang, Xiaofei Xu, Chen Xu, Bettina A. Debrunner-Vossbrinck, Zeyang Zhou:
SilkPathDB: a comprehensive resource for the study of silkworm pathogens. Database J. Biol. Databases Curation 2017: bax001 (2017) - Fay-Wei Li, Catherine A. Rushworth, James B. Beck, Michael D. Windham:
Boechera microsatellite website: an online portal for species identification and determination of hybrid parentage. Database J. Biol. Databases Curation 2017: baw169 (2017) - Jin Li, Ching-San Tseng, Antonio Federico, Franjo Ivankovic, Yi-Shuian Huang, Alfredo Ciccodicola, Maurice S. Swanson, Peng Yu:
SFMetaDB: a comprehensive annotation of mouse RNA splicing factor RNA-Seq datasets. Database J. Biol. Databases Curation 2017: bax071 (2017) - Yuan Liu, Mengqi He, Dan Wang, Lihong Diao, Jinying Liu, Li Tang, Shuzhen Guo, Fuchu He, Dong Li:
HisgAtlas 1.0: a human immunosuppression gene database. Database J. Biol. Databases Curation 2017: bax094 (2017) - Kevin A. MacPherson, Barry Starr, Edith D. Wong, Kyla S. Dalusag, Sage T. Hellerstedt, Olivia W. Lang, Robert S. Nash, Marek S. Skrzypek, Stacia R. Engel, J. Michael Cherry:
Outreach and online training services at the Saccharomyces Genome Database. Database J. Biol. Databases Curation 2017: bax002 (2017) - Sony Malhotra, Grace Mugumbate, Tom L. Blundell, Alicia P. Higueruelo:
TIBLE: a web-based, freely accessible resource for small-molecule binding data for mycobacterial species. Database J. Biol. Databases Curation 2017: bax041 (2017) - Simon Jon McIlroy, Rasmus Hansen Kirkegaard, Bianca McIlroy, Marta Nierychlo, Jannie Munk Kristensen, Søren Michael Karst, Mads Albertsen, Per Halkjær Nielsen:
MiDAS 2.0: an ecosystem-specific taxonomy and online database for the organisms of wastewater treatment systems expanded for anaerobic digester groups. Database J. Biol. Databases Curation 2017: bax016 (2017) - Carlos-Francisco Méndez-Cruz, Socorro Gama-Castro, Citlalli Mejía-Almonte, Marco-Polo Castillo-Villalba, Luis Muñiz-Rascado, Julio Collado-Vides:
First steps in automatic summarization of transcription factor properties for RegulonDB: classification of sentences about structural domains and regulated processes. Database J. Biol. Databases Curation 2017: bax070 (2017)
