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2020 – today
- 2024
[j21]Tingpeng Yang
, Tianze Ling, Boyan Sun, Zhendong Liang, Fan Xu, Xiansong Huang, Linhai Xie, Yonghong He, Leyuan Li, Fuchu He, Yu Wang, Cheng Chang:
Introducing π-HelixNovo for practical large-scale de novo peptide sequencing. Briefings Bioinform. 25(2) (2024)- [i1]Ning Ding, Shang Qu, Linhai Xie, Yifei Li, Zaoqu Liu, Kaiyan Zhang, Yibai Xiong, Yuxin Zuo, Zhangren Chen, Ermo Hua, Xingtai Lv, Youbang Sun, Yang Li, Dong Li, Fuchu He, Bowen Zhou:
Automating Exploratory Proteomics Research via Language Models. CoRR abs/2411.03743 (2024) - 2022
- [j20]Zhongyang Liu, Honglei Li, Zhaoyu Jin, Yang Li, Feifei Guo, Yangzhige He, Xinyue Liu, Yaning Qi, Liying Yuan, Fuchu He, Dong Li:
Exploration of Target Spaces in the Human Genome for Protein and Peptide Drugs. Genom. Proteom. Bioinform. 20(4): 780-794 (2022) - [j19]Limin Shang, Yuehui Zhang, Yuchen Liu, Chaozhi Jin, Yanzhi Yuan, Chunyan Tian, Ming Ni, Xiaochen Bo, Li Zhang, Dong Li, Fuchu He, Jian Wang:
A Yeast BiFC-seq Method for Genome-wide Interactome Mapping. Genom. Proteom. Bioinform. 20(4): 795-807 (2022) - [j18]Xun Wang, Yang Li, Mengqi He, Xiangren Kong, Peng Jiang, Xi Liu, Lihong Diao, Xinlei Zhang, Honglei Li, Xinping Ling, Simin Xia, Zhongyang Liu, Yuan Liu, Chun-Ping Cui, Yan Wang, Liujun Tang, Lingqiang Zhang, Fuchu He, Dong Li:
UbiBrowser 2.0: a comprehensive resource for proteome-wide known and predicted ubiquitin ligase/deubiquitinase-substrate interactions in eukaryotic species. Nucleic Acids Res. 50(D1): 719-728 (2022) - [j17]Zhongyang Liu, Jiale Liu, Xinyue Liu, Xun Wang, Qiaosheng Xie, Xinlei Zhang, Xiangya Kong, Mengqi He, Yuting Yang, Xinru Deng, Lele Yang, Yaning Qi, Jiajun Li, Yuan Liu, Liying Yuan, Lihong Diao, Fuchu He, Dong Li:
CTR-DB, an omnibus for patient-derived gene expression signatures correlated with cancer drug response. Nucleic Acids Res. 50(D1): 1184-1199 (2022) - [j16]Tao Chen, Jie Ma, Yi Liu, Zhiguang Chen, Nong Xiao, Yutong Lu, Yinjin Fu, Chunyuan Yang, Mansheng Li, Songfeng Wu, Xue Wang, Dongsheng Li, Fuchu He, Henning Hermjakob, Yunping Zhu:
iProX in 2021: connecting proteomics data sharing with big data. Nucleic Acids Res. 50(D1): 1522-1527 (2022)
2010 – 2019
- 2019
- [j15]Cheng Chang, Mansheng Li, Chaoping Guo, Yuqing Ding, Kaikun Xu, Mingfei Han, Fuchu He, Yunping Zhu:
PANDA: A comprehensive and flexible tool for quantitative proteomics data analysis. Bioinform. 35(5): 898-900 (2019) - [j14]Xian Liu, Mingfei Han, Chen Zhao, Cheng Chang, Yunping Zhu, Changhui Ge, Ronghua Yin, Yiqun Zhan, Changyan Li, Miao Yu, Fuchu He, Xiaoming Yang:
KeggExp: a web server for visual integration of KEGG pathways and expression profile data. Bioinform. 35(8): 1430-1432 (2019) - [j13]Jie Ma, Tao Chen, Songfeng Wu, Chunyuan Yang, Mingze Bai, Kunxian Shu, Kenli Li, Guoqing Zhang, Zhong Jin, Fuchu He, Henning Hermjakob, Yunping Zhu:
iProX: an integrated proteome resource. Nucleic Acids Res. 47(Database-Issue): D1211-D1217 (2019) - 2018
- [j12]Jinying Liu, Yuan Liu, Dan Wang, Mengqi He, Lihong Diao, Zhongyang Liu, Yang Li, Li Tang, Fuchu He, Dong Li, Shuzhen Guo:
AllerGAtlas 1.0: a human allergy-related genes database. Database J. Biol. Databases Curation 2018: bay010 (2018) - [j11]Cheng Chang, Kaikun Xu, Chaoping Guo, Jinxia Wang, Qi Yan, Jian Zhang, Fuchu He, Yunping Zhu:
PANDA-view: an easy-to-use tool for statistical analysis and visualization of quantitative proteomics data. Bioinform. 34(20): 3594-3596 (2018) - 2017
- [j10]Yuan Liu, Mengqi He, Dan Wang, Lihong Diao, Jinying Liu, Li Tang, Shuzhen Guo, Fuchu He, Dong Li:
HisgAtlas 1.0: a human immunosuppression gene database. Database J. Biol. Databases Curation 2017: bax094 (2017) - 2016
- [j9]Song He, Haochen He, Wenjian Xu, Xin Huang, Shuai Jiang, Fei Li, Fuchu He, Xiaochen Bo:
ICM: a web server for integrated clustering of multi-dimensional biomedical data. Nucleic Acids Res. 44(Webserver-Issue): W154-W159 (2016) - 2015
- [j8]Zhongyang Liu, Feifei Guo, Jiangyong Gu, Yong Wang, Yang Li, Dan Wang, Liang Lu, Dong Li, Fuchu He:
Similarity-based prediction for Anatomical Therapeutic Chemical classification of drugs by integrating multiple data sources. Bioinform. 31(11): 1788-1795 (2015) - 2014
- [j7]Cheng Chang, Jiyang Zhang, Mingfei Han, Jie Ma, Wei Zhang, Songfeng Wu, Kehui Liu, Hongwei Xie, Fuchu He, Yunping Zhu:
SILVER: an efficient tool for stable isotope labeling LC-MS data quantitative analysis with quality control methods. Bioinform. 30(4): 586-587 (2014) - 2013
- [j6]Wei Liu, Dong Li, Yunping Zhu, Hongwei Xie, Fuchu He:
Reconstruction of Signaling Network from Protein Interactions Based on Function Annotations. IEEE ACM Trans. Comput. Biol. Bioinform. 10(2): 514-521 (2013) - 2012
- [c1]Hao Guo, Yunping Zhu, Dong Li, Fuchu He, Qijun Liu:
Using NMFAS to identify key biological pathways associated with human diseases. ISB 2012: 79-85 - 2010
- [j5]Xianming Wu, Songfeng Wu, Dong Li, Jiyang Zhang, Lin Hou, Jie Ma, Wanlin Liu, Daming Ren, Yunping Zhu, Fuchu He:
Computational identification of rare codons of Escherichia coli based on codon pairs preference. BMC Bioinform. 11: 61 (2010) - [j4]Wanlin Liu, Dong Li, Qijun Liu, Yunping Zhu, Fuchu He:
A novel parametric approach to mine gene regulatory relationship from microarray datasets. BMC Bioinform. 11(S-11): S15 (2010)
2000 – 2009
- 2008
- [j3]Jiyang Zhang, Jianqi Li, Xin Liu, Hongwei Xie, Yunping Zhu, Fuchu He:
A nonparametric model for quality control of database search results in shotgun proteomics. BMC Bioinform. 9 (2008) - 2006
- [j2]Wei Liu, Dong Li, Jiyang Zhang, Yunping Zhu, Fuchu He:
SigFlux: A novel network feature to evaluate the importance of proteins in signal transduction networks. BMC Bioinform. 7: 515 (2006) - 2003
- [j1]Keyue Ding, Kaixin Zhou, Fuchu He, Yan Shen:
LDA - a java-based linkage disequilibrium analyzer. Bioinform. 19(16): 2147-2148 (2003)
Coauthor Index
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