- 2017
- Nor Afiqah-Aleng
, Sarahani Harun, Mohd Rusman Arief A.-Rahman, Nor Azlan Nor Muhammad, Zeti-Azura Mohamed-Hussein:
PCOSBase: a manually curated database of polycystic ovarian syndrome. Database J. Biol. Databases Curation 2017: bax098 (2017) - Bülent Arman Aksoy, Vlado Dancík, Kenneth Smith, Jessica N. Mazerik, Zhou Ji, Benjamin E. Gross, Olga Nikolova, Nadia Jaber, Andrea Califano, Stuart L. Schreiber, Daniela S. Gerhard, Leandro Hermida, Subhashini Jagu, Chris Sander, Aris Floratos, Paul A. Clemons:
CTD2 Dashboard: a searchable web interface to connect validated results from the Cancer Target Discovery and Development Network. Database J. Biol. Databases Curation 2017: bax054 (2017) - Roberto Vera Alvarez, Newton Medeiros Vidal, Gina A. Garzón-Martínez, Luz S. Barrero, David Landsman, Leonardo Mariño-Ramírez:
Workflow and web application for annotating NCBI BioProject transcriptome data. Database J. Biol. Databases Curation 2017: bax008 (2017) - S. M. Niaz Arifin, Gregory R. Madey, Alexander Vyushkov, Benoit Raybaud, Thomas R. Burkot, Frank H. Collins:
An online analytical processing multi-dimensional data warehouse for malaria data. Database J. Biol. Databases Curation 2017: bax073 (2017) - Chris Armit, Bill Hill, Shanmugasundaram Venkataraman, Kenneth McLeod, Albert Burger, Richard A. Baldock:
The 'straight mouse': defining anatomical axes in 3D embryo models. Database J. Biol. Databases Curation 2017: bax010 (2017) - Ferhat Aydin, Zehra Melce Hüsünbeyi, Arzucan Özgür:
Automatic query generation using word embeddings for retrieving passages describing experimental methods. Database J. Biol. Databases Curation 2017: baw166 (2017) - Michael Bada, Nicole A. Vasilevsky, William A. Baumgartner Jr., Melissa A. Haendel, Lawrence E. Hunter:
Gold-standard ontology-based anatomical annotation in the CRAFT Corpus. Database J. Biol. Databases Curation 2017: bax087 (2017) - Yalbi Itzel Balderas-Martínez, Fabio Rinaldi, Gabriela Contreras, Hilda Solano-Lira, Mishael Sánchez-Pérez, Julio Collado-Vides, Moisés Selman, Annie Pardo:
Improving biocuration of microRNAs in diseases: a case study in idiopathic pulmonary fibrosis. Database J. Biol. Databases Curation 2017: bax030 (2017) - Aitor Blanco-Míguez, Alberto Gutiérrez-Jácome, Florentino Fdez-Riverola, Anália Lourenço, Borja Sánchez:
MAHMI database: a comprehensive MetaHit-based resource for the study of the mechanism of action of the human microbiota. Database J. Biol. Databases Curation 2017: baw157 (2017) - Mohamed Reda Bouadjenek, Karin Verspoor:
Multi-field query expansion is effective for biomedical dataset retrieval. Database J. Biol. Databases Curation 2017: bax062 (2017) - Mohamed Reda Bouadjenek, Karin Verspoor, Justin Zobel:
Literature consistency of bioinformatics sequence databases is effective for assessing record quality. Database J. Biol. Databases Curation 2017: bax021 (2017) - Luís Campos, Vasco Pedro, Francisco M. Couto:
Impact of translation on named-entity recognition in radiology texts. Database J. Biol. Databases Curation 2017: bax064 (2017) - João Carneiro, Adriana Resende, Filipe Pereira:
The HIV oligonucleotide database (HIVoligoDB). Database J. Biol. Databases Curation 2017: bax005 (2017) - Richard J. Challis, Sujai Kumar, Lewis Stevens, Mark L. Blaxter:
GenomeHubs: simple containerized setup of a custom Ensembl database and web server for any species. Database J. Biol. Databases Curation 2017: bax039 (2017) - Nai-Wen Chang, Hong-Jie Dai, Yung-Yu Shih, Chi-Yang Wu, Mira Anne C. dela Rosa, Rofeamor P. Obena, Yu-Ju Chen, Wen-Lian Hsu, Yen-Jen Oyang:
Biomarker identification of hepatocellular carcinoma using a methodical literature mining strategy. Database J. Biol. Databases Curation 2017: bax082 (2017) - Asma N. Cheema, Samantha L. Rosenthal, M. Ilyas Kamboh:
Proficiency of data interpretation: identification of signaling SNPs/specific loci for coronary artery disease. Database J. Biol. Databases Curation 2017: bax078 (2017) - Ming Chen, Nathan Henry, Abdullah Almsaeed, Xiao Zhou, Jill L. Wegrzyn, Stephen P. Ficklin, Margaret Staton:
New extension software modules to enhance searching and display of transcriptome data in Tripal databases. Database J. Biol. Databases Curation 2017: bax052 (2017) - Yaxin Chen, Mijuan Shi, Wanting Zhang, Yingyin Cheng, Yaping Wang, Xiaoqin Xia:
The Grass Carp Genome Database (GCGD): an online platform for genome features and annotations. Database J. Biol. Databases Curation 2017: bax051 (2017) - Xing Chen, Ya-Zhou Sun, De-Hong Zhang, Jian-Qiang Li, Guiying Yan, Ji-Yong An, Zhu-Hong You:
NRDTD: a database for clinically or experimentally supported non-coding RNAs and drug targets associations. Database J. Biol. Databases Curation 2017: bax057 (2017) - Qingyu Chen, Justin Zobel, Karin Verspoor:
Duplicates, redundancies and inconsistencies in the primary nucleotide databases: a descriptive study. Database J. Biol. Databases Curation 2017: baw163 (2017) - John A. Choi, John J. Wyrick:
RegulatorDB: a resource for the analysis of yeast transcriptional regulation. Database J. Biol. Databases Curation 2017: bax058 (2017) - Trevor Cohen, Kirk Roberts, Anupama E. Gururaj, Xiaoling Chen, Saeid Pournejati, George Alter, William R. Hersh, Dina Demner-Fushman, Lucila Ohno-Machado, Hua Xu:
A publicly available benchmark for biomedical dataset retrieval: the reference standard for the 2016 bioCADDIE dataset retrieval challenge. Database J. Biol. Databases Curation 2017: bax061 (2017) - Ana Rosa Cortázar, José A. Oguiza, Ana M. Aransay, José Luis Lavín:
VerSeDa: vertebrate secretome database. Database J. Biol. Databases Curation 2017: baw171 (2017) - Sankha Subhra Das, Mithun James, Sandip Paul, Nishant Chakravorty:
miRnalyze: an interactive database linking tool to unlock intuitive microRNA regulation of cell signaling pathways. Database J. Biol. Databases Curation 2017: bax015 (2017) - Mario Deng, Johannes Brägelmann, Ivan Kryukov, Nuno Saraiva-Agostinho, Sven Perner:
FirebrowseR: an R client to the Broad Institute's Firehose Pipeline. Database J. Biol. Databases Curation 2017: baw160 (2017) - Ruoyao Ding, Emmanuel Boutet, Damien Lieberherr, Michel Schneider, Michael Tognolli, Cathy H. Wu, K. Vijay-Shanker, Cecilia N. Arighi:
eGenPub, a text mining system for extending computationally mapped bibliography for UniProt Knowledgebase by capturing centrality. Database J. Biol. Databases Curation 2017: bax081 (2017) - Peng Ding, Xin Yan, Zhihong Liu, Jiewen Du, Yunfei Du, Yutong Lu, Di Wu, Yuehua Xu, Huihao Zhou, Qiong Gu, Jun Xu:
PTS: a pharmaceutical target seeker. Database J. Biol. Databases Curation 2017: bax095 (2017) - Rezarta Islamaj Dogan, Sun Kim, Andrew Chatr-aryamontri, Christie S. Chang, Rose Oughtred, Jennifer M. Rust, W. John Wilbur, Donald C. Comeau, Kara Dolinski, Mike Tyers:
The BioC-BioGRID corpus: full text articles annotated for curation of protein-protein and genetic interactions. Database J. Biol. Databases Curation 2017: baw147 (2017) - Mathurin Dorel, Eric Viara, Emmanuel Barillot, Andrei Yu. Zinovyev, Inna Kuperstein:
NaviCom: a web application to create interactive molecular network portraits using multi-level omics data. Database J. Biol. Databases Curation 2017: bax026 (2017) - Zhonghai Fang, Yichen Yang, Yanshi Hu, Ming D. Li, Ju Wang:
GRONS: a comprehensive genetic resource of nicotine and smoking. Database J. Biol. Databases Curation 2017: bax097 (2017)
