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ORCIDYehoshua Perl
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- affiliation: New Jersey Institute of Technology, Newark, USA
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2020 – today
- 2024
[c80]Mahshad Koohi H. Dehkordi, Navya Martin Kollapally, Yehoshua Perl, James Geller, Fadi P. Deek, Hao Liu, Vipina Kuttichi Keloth, Gai Elhanan, Andrew J. Einstein:
Skimming of Electronic Health Records Highlighted by an Interface Terminology Curated with Machine Learning Mining. BIOSTEC (2) 2024: 498-505- [c79]Hao Liu, Shuxin Zhou, Zhehuan Chen, Yehoshua Perl, Jiayin Wang:
Using Generative Large Language Models for Hierarchical Relationship Prediction in Medical Ontologies. ICHI 2024: 248-256 - 2023
- [j109]Michael Halper, Larisa N. Soldatova, Mathias Brochhausen, Fatima Sabiu Maikore, Christopher Ochs, Yehoshua Perl:
Guidelines for the reuse of ontology content. Appl. Ontology 18(1): 5-29 (2023) - [j108]Vipina Kuttichi Keloth
, Shuxin Zhou, Luke Lindemann, Ling Zheng, Gai Elhanan, Andrew J. Einstein, James Geller, Yehoshua Perl:
Mining of EHR for interface terminology concepts for annotating EHRs of COVID patients. BMC Medical Informatics Decis. Mak. 23(1): 40 (2023) - [j107]Ling Zheng, Yehoshua Perl, Yongqun He:
Big knowledge visualization of the COVID-19 CIDO ontology evolution. BMC Medical Informatics Decis. Mak. 23(1): 88 (2023) - [c78]Mahshad Koohi H. Dehkordi, Andrew J. Einstein, Shuxin Zhou, Gai Elhanan, Yehoshua Perl, Vipina Kuttichi Keloth, James Geller, Hao Liu:
Using annotation for computerized support for fast skimming of cardiology electronic health record notes. BIBM 2023: 4043-4050 - 2022
- [j106]Yongqun He, Hong Yu, Anthony Huffman, Asiyah Yu Lin, Darren A. Natale, John Beverley, Ling Zheng, Yehoshua Perl, Zhigang Wang, Yingtong Liu, Edison Ong, Yang Wang, Philip Huang, Long Tran, Jinyang Du, Zalan Shah, Easheta Shah, Roshan Desai, Hsin-Hui Huang, Yujia Tian, Eric Merrell, William D. Duncan, Sivaram Arabandi, Lynn M. Schriml, Jie Zheng, Anna Maria Masci, Liwei Wang, Hongfang Liu, Fatima Zohra Smaili, Robert Hoehndorf, Zoë May Pendlington, Paola Roncaglia, Xianwei Ye, Jiangan Xie, Yi-Wei Tang, Xiaolin Yang, Suyuan Peng, Luxia Zhang, Luonan Chen, Junguk Hur, Gilbert S. Omenn, Brian D. Athey, Barry Smith:
A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology. J. Biomed. Semant. 13(1): 25 (2022) - 2021
- [j105]Ling Zheng, Yehoshua Perl, Yongqun He, Christopher Ochs, James Geller, Hao Liu, Vipina Kuttichi Keloth:
Visual comprehension and orientation into the COVID-19 CIDO ontology. J. Biomed. Informatics 120: 103861 (2021) - 2020
- [j104]Ling Zheng, Zhe He, Duo Helen Wei, Vipina Kuttichi Keloth, Jungwei Fan, Luke Lindemann, Xinxin Zhu, James J. Cimino, Yehoshua Perl:
A review of auditing techniques for the Unified Medical Language System. J. Am. Medical Informatics Assoc. 27(10): 1625-1638 (2020) - [j103]Hao Liu, Yehoshua Perl, James Geller:
Concept placement using BERT trained by transforming and summarizing biomedical ontology structure. J. Biomed. Informatics 112: 103607 (2020) - [j102]Ling Zheng, Hua Min, Yan Chen, Vipina Kuttichi Keloth, James Geller, Yehoshua Perl, George Hripcsak:
Outlier concepts auditing methodology for a large family of biomedical ontologies. BMC Medical Informatics Decis. Mak. 20-S(10): 296 (2020) - [j101]Ling Zheng, Yan Chen, Hua Min, P. Lloyd Hildebrand, Hao Liu, Michael Halper, James Geller, Sherri de Coronado, Yehoshua Perl:
Missing lateral relationships in top-level concepts of an ontology. BMC Medical Informatics Decis. Mak. 20-S(10): 305 (2020) - [c77]Vipina Kuttichi Keloth, Shuxin Zhou, Andrew J. Einstein, Gai Elhanan, Yan Chen, James Geller, Yehoshua Perl:
Generating Training Data for Concept-Mining for an 'Interface Terminology' Annotating Cardiology EHRs. BIBM 2020: 1728-1735 - [c76]Vipina Kuttichi Keloth, Shuxin Zhou, Luke Lindemann, Gai Elhanan, Andrew J. Einstein, James Geller, Yehoshua Perl:
Mining Concepts for a COVID Interface Terminology for Annotation of EHRs. IEEE BigData 2020: 3753-3760
2010 – 2019
- 2019
- [j100]Hasan Yumak, Ling Zheng, Ling Chen, Michael Halper, Yehoshua Perl, Gareth Owen:
Quality assurance of complex ChEBI concepts based on number of relationship types. Appl. Ontology 14(3): 199-214 (2019) - [c75]Hao Liu, Yehoshua Perl, James Geller:
Transfer Learning from BERT to Support Insertion of New Concepts into SNOMED CT. AMIA 2019 - [c74]Ling Zheng, Hao Liu, Yehoshua Perl, James Geller:
Training Convolutional Neural Network with Terminology Summarization Data Improves SNOMED CT Enrichment. AMIA 2019 - 2018
- [j99]Ling Zheng, Yan Chen, Gai Elhanan, Yehoshua Perl, James Geller, Christopher Ochs:
Complex overlapping concepts: An effective auditing methodology for families of similarly structured BioPortal ontologies. J. Biomed. Informatics 83: 135-149 (2018) - [j98]James Geller, Yehoshua Perl, Licong Cui, Guo-Qiang Zhang:
Quality assurance of biomedical terminologies and ontologies. J. Biomed. Informatics 86: 106-108 (2018) - [c73]Hao Liu, James Geller, Michael Halper, Yehoshua Perl:
Using Convolutional Neural Networks to Support Insertion of New Concepts into SNOMED CT. AMIA 2018 - [c72]Ling Zheng, Hao Liu, Yehoshua Perl, James Geller, Christopher Ochs, James T. Case:
Overlapping Complex Concepts Have More Commission Errors, Especially in Intensive Terminology Auditing. AMIA 2018 - [c71]Hao Liu, P. Lloyd Hildebrand, Yehoshua Perl, James Geller:
Enrichment of SNOMED CT Ophthalmology Component to Support EHR Coding. BIBM 2018: 1990-1997 - [c70]Ling Zheng, Yan Chen, Yehoshua Perl, Michael Halper, James Geller, Sherri de Coronado:
Quality Assurance of Concept Roles in the National Cancer Institute thesaurus. BIBM 2018: 2001-2008 - [c69]Hao Liu, Ling Zheng, Yehoshua Perl, James Geller, Gai Elhanan:
Can a Convolutional Neural Network Support Auditing of NCI Thesaurus Neoplasm Concepts? ICBO 2018 - [c68]Michael Halper, Christopher Ochs, Yehoshua Perl, Sivaram Arabandi, Mark A. Musen:
Quality Assurance of Ontology Content Reuse. ICBO 2018 - [c67]Hao Liu, Ling Chen, Ling Zheng, Yehoshua Perl, James Geller:
A Quality Assurance Methodology for ChEBI Ontology Focusing on Uncommonly Modeled Concepts. ICBO 2018 - 2017
- [j97]Ling Zheng, Hua Min, Yan Chen, Julia Xu, James Geller, Yehoshua Perl:
Auditing National Cancer Institute thesaurus neoplasm concepts in groups of high error concentration. Appl. Ontology 12(2): 113-130 (2017) - [j96]Gai Elhanan, Christopher Ochs, José L. V. Mejino Jr., Hao Liu, Christopher J. Mungall, Yehoshua Perl:
From SNOMED CT to Uberon: Transferability of evaluation methodology between similarly structured ontologies. Artif. Intell. Medicine 79: 9-14 (2017) - [j95]Christopher Ochs, James T. Case, Yehoshua Perl:
Analyzing structural changes in SNOMED CT's Bacterial infectious diseases using a visual semantic delta. J. Biomed. Informatics 67: 101-116 (2017) - [j94]Christopher Ochs, Yehoshua Perl, James Geller, Sivaram Arabandi, Tania Tudorache, Mark A. Musen:
An empirical analysis of ontology reuse in BioPortal. J. Biomed. Informatics 71: 165-177 (2017) - [j93]Ling Zheng, Hasan Yumak, Ling Chen, Christopher Ochs, James Geller, Joan Kapusnik-Uner, Yehoshua Perl:
Quality assurance of chemical ingredient classification for the National Drug File - Reference Terminology. J. Biomed. Informatics 73: 30-42 (2017) - [c66]Christopher Ochs, James Geller, Yehoshua Perl:
Applications of the Ontology Abstraction Framework. AMIA 2017 - [c65]Ling Zheng, Hua Min, Yehoshua Perl, James Geller:
Discovering additional complex NCIt gene concepts with high error rate. BIBM 2017: 653-657 - [c64]Zhe He, Yehoshua Perl, Gai Elhanan, Yan Chen, James Geller, Jiang Bian:
Auditing the assignments of top-level semantic types in the UMLS semantic network to UMLS concepts. BIBM 2017: 1262-1269 - [c63]Ling Zheng, Christopher Ochs, James Geller, Hao Liu, Yehoshua Perl, Sherri de Coronado:
Multi-layer Big Knowledge Visualization Scheme for Comprehending Neoplasm Ontology Content. ICBK 2017: 127-134 - [c62]Ling Zheng, Yehoshua Perl, Gai Elhanan, Christopher Ochs, James Geller, Michael Halper:
Summarizing an Ontology: A "Big Knowledge" Coverage Approach. MedInfo 2017: 978-982 - [c61]Hao Liu, Ling Zheng, Yehoshua Perl, Yan Chen, Gai Elhanan:
Correcting Ontology Errors Simplifies Visual Complexity. MedInfo 2017: 1330 - [c60]Christopher Ochs, James Geller, Mark A. Musen, Yehoshua Perl:
Real Time Summarization and Visualization of Ontology Change in Protégé. VOILA@ISWC 2017: 75-86 - 2016
- [j92]Ankur Agrawal, Yehoshua Perl, Christopher Ochs, Gai Elhanan:
A contextual auditing method for SNOMED CT concepts. Int. J. Data Min. Bioinform. 15(4): 372-391 (2016) - [j91]Christopher Ochs, Yehoshua Perl, Michael Halper, James Geller, Jane Lomax:
Quality assurance of the gene ontology using abstraction networks. J. Bioinform. Comput. Biol. 14(3): 1642001:1-1642001:22 (2016) - [j90]Christopher Ochs, Zhe He, Ling Zheng, James Geller, Yehoshua Perl, George Hripcsak, Mark A. Musen:
Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologies. J. Biomed. Informatics 61: 63-76 (2016) - [j89]Christopher Ochs, James Geller, Yehoshua Perl, Mark A. Musen:
A unified software framework for deriving, visualizing, and exploring abstraction networks for ontologies. J. Biomed. Informatics 62: 90-105 (2016) - [c59]Christopher Ochs, James T. Case, Yehoshua Perl:
Tracking the Remodeling of SNOMED CT's Bacterial Infectious Diseases. AMIA 2016 - [c58]Christopher Ochs, Yehoshua Perl, Gai Elhanan, James T. Case:
A Descriptive Delta for Identifying Changes in SNOMED CT. ICBO/BioCreative 2016 - [c57]Yehoshua Perl, Christopher Ochs, Sherri de Coronado, Nicole Thomas:
Visualizing the "Big Picture" of Change in NCIt's Biological Processes. ICBO/BioCreative 2016 - [c56]Hasan Yumak, Ling Chen, Michael Halper, Ling Zheng, Yehoshua Perl, Gai Elhanan:
A Quality-Assurance Study of ChEBI. ICBO/BioCreative 2016 - [c55]Ling Zheng, Yehoshua Perl, James Geller, Gai Elhanan:
How to Summarize Big Knowledge Subjects. ICBO/BioCreative 2016 - 2015
- [j88]Michael Halper, Huanying Gu, Yehoshua Perl, Christopher Ochs:
Abstraction networks for terminologies: Supporting management of "big knowledge". Artif. Intell. Medicine 64(1): 1-16 (2015) - [j87]Christopher Ochs, James Geller, Yehoshua Perl, Yan Chen, Junchuan Xu, Hua Min, James T. Case, Zhi Wei:
Scalable quality assurance for large SNOMED CT hierarchies using subject-based subtaxonomies. J. Am. Medical Informatics Assoc. 22(3): 507-518 (2015) - [j86]Christopher Ochs, James Geller, Yehoshua Perl, Yan Chen, Ankur Agrawal, James T. Case, George Hripcsak:
A tribal abstraction network for SNOMED CT target hierarchies without attribute relationships. J. Am. Medical Informatics Assoc. 22(3): 628-639 (2015) - [j85]Christopher Ochs, Yehoshua Perl, James Geller, Melissa A. Haendel, Matthew H. Brush, Sivaram Arabandi, Samson W. Tu:
Summarizing and visualizing structural changes during the evolution of biomedical ontologies using a Diff Abstraction Network. J. Biomed. Informatics 56: 127-144 (2015) - [j84]Duo Helen Wei, Huanying Helen Gu, Yehoshua Perl, Michael Halper, Christopher Ochs, Gai Elhanan, Yan Chen:
Structural measures to track the evolution of SNOMED CT hierarchies. J. Biomed. Informatics 57: 278-287 (2015) - [c54]Christopher Ochs, Ling Zheng, Huanying Gu, Yehoshua Perl, James Geller, Joan Kapusnik-Uner, Aleksandr Zakharchenko:
Drug-drug Interaction Discovery Using Abstraction Networks for "National Drug File - Reference Terminology" Chemical Ingredients. AMIA 2015 - [c53]Ankur Agrawal, Yehoshua Perl, Christopher Ochs, Gai Elhanan:
Algorithmic detection of inconsistent modeling among SNOMED CT concepts by combining lexical and structural indicators. BIBM 2015: 476-483 - [c52]Christopher Ochs, Yehoshua Perl, James Geller, Mark A. Musen:
Using aggregate taxonomies to summarize SNOMED CT evolution. BIBM 2015: 1008-1015 - 2013
- [j83]Ankur Agrawal, Zhe He, Yehoshua Perl, Duo Helen Wei, Michael Halper, Gai Elhanan, Yan Chen:
The readiness of SNOMED problem list concepts for meaningful use of electronic health records. Artif. Intell. Medicine 58(2): 73-80 (2013) - [j82]James Geller, Zhe He, Yehoshua Perl, C. Paul Morrey, Julia Xu:
Rule-based support system for multiple UMLS semantic type assignments. J. Biomed. Informatics 46(1): 97-110 (2013) - [c51]Zhe He, Christopher Ochs, Ankur Agrawal, Yehoshua Perl, Dimitris Zeginis, Konstantinos A. Tarabanis, Gai Elhanan, Michael Halper, Natasha F. Noy, James Geller:
A Family-Based Framework for Supporting Quality Assurance of Biomedical Ontologies in BioPortal. AMIA 2013 - [c50]Ankur Agrawal, Yehoshua Perl, Yan Chen, Gai Elhanan, Mei Liu:
Identifying Inconsistencies in SNOMED CT Problem Lists using Structural Indicators. AMIA 2013 - [c49]Christopher Ochs, Yehoshua Perl, James Geller, Michael Halper, Huanying Helen Gu, Yan Chen, Gai Elhanan:
Scalability of Abstraction-Network-Based Quality Assurance to Large SNOMED Hierarchies. AMIA 2013 - [c48]Zhe He, Christopher Ochs, Larisa N. Soldatova, Yehoshua Perl, Sivaram Arabandi, James Geller:
Auditing Redundant Import in Reuse of a Top Level Ontology for the Drug Discovery Investigations Ontology. VDOS+DO@ICBO 2013 - [c47]Christopher Ochs, Zhe He, Yehoshua Perl, Sivaram Arabandi, Michael Halper, James Geller:
Choosing the Granularity of Abstraction Networks for Orientation and Quality Assurance of the Sleep Domain Ontology. ICBO 2013: 84-89 - [c46]Christopher Ochs, Yehoshua Perl, James Geller:
BLUSNO: A System for Orientation, Visualization, and Quality Assurance of SNOMED CT Using Abstraction Networks. ICBO 2013: 128-129 - [c45]Ankur Agrawal, Yehoshua Perl, Gai Elhanan:
Identifying Problematic Concepts in SNOMED CT using a Lexical Approach. MedInfo 2013: 773-777 - 2012
- [j81]Yue Wang, Michael Halper, Duo Helen Wei, Huanying Gu, Yehoshua Perl, Junchuan Xu, Gai Elhanan, Yan Chen, Kent A. Spackman, James T. Case, George Hripcsak:
Auditing complex concepts of SNOMED using a refined hierarchical abstraction network. J. Biomed. Informatics 45(1): 1-14 (2012) - [j80]Yue Wang, Michael Halper, Duo Helen Wei, Yehoshua Perl, James Geller:
Abstraction of complex concepts with a refined partial-area taxonomy of SNOMED. J. Biomed. Informatics 45(1): 15-29 (2012) - [j79]Yan Chen, Huanying Gu, Yehoshua Perl, James Geller:
Overcoming an obstacle in expanding a UMLS semantic type extent. J. Biomed. Informatics 45(1): 61-70 (2012) - [j78]Huanying Gu, Gai Elhanan, Yehoshua Perl, George Hripcsak, James J. Cimino, Julia Xu, Yan Chen, James Geller, C. Paul Morrey:
A study of terminology auditors' performance for UMLS semantic type assignments. J. Biomed. Informatics 45(6): 1042-1048 (2012) - [j77]C. Paul Morrey, Yehoshua Perl, Michael Halper, Ling Chen, Huanying Gu:
A chemical specialty semantic network for the Unified Medical Language System. J. Cheminformatics 4: 9 (2012) - [c44]David Daudelin, James Geller, Yehoshua Perl:
Using Gamification and Crowdsourcing to Enhance Terminology Auditing. AMIA 2012 - [c43]James Geller, Christopher Ochs, Yehoshua Perl, Junchuan Xu:
New Abstraction Networks and a New Visualization Tool in Support of Auditing the SNOMED CT Content. AMIA 2012 - [c42]Christopher Ochs, Ankur Agrawal, Yehoshua Perl, Michael Halper, Samson W. Tu, Simona Carini, Ida Sim, Natalya Fridman Noy, Mark A. Musen, James Geller:
Deriving an Abstraction Network to Support Quality Assurance in OCRe. AMIA 2012 - [c41]Zhe He, Michael Halper, Yehoshua Perl, Gai Elhanan:
Clinical clarity versus terminological order: the readiness of SNOMED CT concept descriptors for primary care. MIX-HS 2012: 1-6 - 2011
- [j76]C. Paul Morrey, Ling Chen, Michael Halper, Yehoshua Perl:
Resolution of redundant semantic type assignments for organic chemicals in the UMLS. Artif. Intell. Medicine 52(3): 141-151 (2011) - [j75]Kuo-Chuan Huang, James Geller, Michael Halper, Gai Elhanan, Yehoshua Perl:
Scalability of Piecewise Synonym Identification in Integration of SNOMED into the UMLS. Int. J. Comput. Model. Algorithms Medicine 2(3): 26-45 (2011) - [j74]Gai Elhanan, Yehoshua Perl, James Geller:
A survey of SNOMED CT direct users, 2010: impressions and preferences regarding content and quality. J. Am. Medical Informatics Assoc. 18(Supplement): 36-44 (2011) - [j73]Christopher Ochs, James Geller, Yehoshua Perl:
A Relationship-Centric Hybrid Interface for Browsing and Auditing the UMLS. Trans. SDPS 15(4): 3-25 (2011) - 2010
- [j72]Gai Elhanan, Kuo-Chuan Huang, Yehoshua Perl:
Source authenticity in the UMLS - A case study of the Minimal Standard Terminology. J. Biomed. Informatics 43(6): 988-997 (2010)
2000 – 2009
- 2009
- [j71]Kuo-Chuan Huang, James Geller, Michael Halper, Yehoshua Perl, Junchuan Xu:
Using WordNet synonym substitution to enhance UMLS source integration. Artif. Intell. Medicine 46(2): 97-109 (2009) - [j70]Ling Chen, C. Paul Morrey, Huanying Gu, Michael Halper, Yehoshua Perl:
Research Paper: Modeling Multi-typed Structurally Viewed Chemicals with the UMLS Refined Semantic Network. J. Am. Medical Informatics Assoc. 16(1): 116-131 (2009) - [j69]Yan Chen, Huanying Gu, Yehoshua Perl, Michael Halper, Junchuan Xu:
Research Paper: Expanding the Extent of a UMLS Semantic Type via Group Neighborhood Auditing. J. Am. Medical Informatics Assoc. 16(5): 746-757 (2009) - [j68]Yan Chen, Huanying Gu, Yehoshua Perl, James Geller, Michael Halper:
Structural group auditing of a UMLS semantic type's extent. J. Biomed. Informatics 42(1): 41-52 (2009) - [j67]James Geller, Yehoshua Perl, Michael Halper, Ronald Cornet:
Special Issue on Auditing of Terminologies. J. Biomed. Informatics 42(3): 407-411 (2009) - [j66]Yan Chen, Huanying Helen Gu, Yehoshua Perl, James Geller:
Structural group-based auditing of missing hierarchical relationships in UMLS. J. Biomed. Informatics 42(3): 452-467 (2009) - [j65]C. Paul Morrey, James Geller, Michael Halper, Yehoshua Perl:
The Neighborhood Auditing Tool: A hybrid interface for auditing the UMLS. J. Biomed. Informatics 42(3): 468-489 (2009) - [c40]James Geller, C. Paul Morrey, Junchuan Xu, Michael Halper, Gai Elhanan, Yehoshua Perl, George Hripcsak:
Comparing Inconsistent Relationship Configurations Indicating UMLS Errors. AMIA 2009 - [c39]Duo Helen Wei, Michael Halper, Gai Elhanan, Yan Chen, Yehoshua Perl, James Geller, Kent A. Spackman:
Auditing SNOMED Relationships Using a Converse Abstraction Network. AMIA 2009 - 2008
- [j64]Yan Chen, Yehoshua Perl, James Geller, George Hripcsak, Li Zhang:
Comparing and consolidating two heuristic metaschemas. J. Biomed. Informatics 41(2): 293-317 (2008) - [j63]Barry Cohen, Marc Oren, Hua Min, Yehoshua Perl, Michael Halper:
Automated comparative auditing of NCIT genomic roles using NCBI. J. Biomed. Informatics 41(6): 904-913 (2008) - [c38]Yue Wang, Duo Helen Wei, Junchuan Xu, Gai Elhanan, Yehoshua Perl, Michael Halper, Yan Chen, Kent A. Spackman, George Hripcsak:
Auditing Complex Concepts in Overlapping Subsets of SNOMED. AMIA 2008 - [c37]Duo Helen Wei, Yue Wang, Yehoshua Perl, Junchuan Xu, Michael Halper, Kent A. Spackman:
Complexity Measures to Track the Evolution of a SNOMED Hierarchy. AMIA 2008 - 2007
- [j62]Michael Halper, Li-min Liu, James Geller, Yehoshua Perl:
Ownership as a conceptual modeling construct. Data Knowl. Eng. 62(2): 248-273 (2007) - [j61]Yan Chen, Yehoshua Perl, James Geller, James J. Cimino:
Analysis of a Study of the Users, Uses, and Future Agenda of the UMLS. J. Am. Medical Informatics Assoc. 14(2): 221-231 (2007) - [j60]Yue Wang, Michael Halper, Hua Min, Yehoshua Perl, Yan Chen, Kent A. Spackman:
Structural methodologies for auditing SNOMED. J. Biomed. Informatics 40(5): 561-581 (2007) - [c36]Barry Cohen, Yan Chen, Yehoshua Perl:
Updating the Genomic Component of the UMLS Semantic Network. AMIA 2007 - [c35]Huanying Gu, George Hripcsak, Yan Chen, C. Paul Morrey, Gai Elhanan, James J. Cimino, James Geller, Yehoshua Perl:
Evaluation of a UMLS Auditing Process of Semantic Type Assignments. AMIA 2007 - [c34]Michael Halper, Yue Wang, Hua Min, Yan Chen, George Hripcsak, Yehoshua Perl, Kent A. Spackman:
Analysis of Error Concentrations in SNOMED. AMIA 2007 - 2006
- [j59]Hua Min, Yehoshua Perl, Yan Chen, Michael Halper, James Geller, Yue Wang:
Research Paper: Auditing as Part of the Terminology Design Life Cycle. J. Am. Medical Informatics Assoc. 13(6): 676-690 (2006) - [c33]Xuan Zhou, James Geller, Yehoshua Perl, Michael Halper:
An Application Intersection Marketing Ontology. Essays in Memory of Shimon Even 2006: 143-163 - 2005
- [j58]Li Zhang, Yehoshua Perl, Michael Halper, James Geller, George Hripcsak:
A lexical metaschema for the UMLS semantic network. Artif. Intell. Medicine 33(1): 41-59 (2005) - [j57]Li Zhang, George Hripcsak, Yehoshua Perl, Michael Halper, James Geller:
An expert study evaluating the UMLS lexical metaschema. Artif. Intell. Medicine 34(3): 219-233 (2005) - [j56]Li Zhang, Michael Halper, Yehoshua Perl, James Geller, James J. Cimino:
Model Formulation: Relationship Structures and Semantic Type Assignments of the UMLS Enriched Semantic Network. J. Am. Medical Informatics Assoc. 12(6): 657-666 (2005) - 2004
- [j55]Huanying Gu, Yehoshua Perl, Gai Elhanan, Hua Min, Li Zhang, Yi Peng:
Auditing concept categorizations in the UMLS. Artif. Intell. Medicine 31(1): 29-44 (2004) - [j54]Li Zhang, Yehoshua Perl, Michael Halper, James Geller, James J. Cimino:
Model Formulation: An Enriched Unified Medical Language System Semantic Network with a Multiple Subsumption Hierarchy. J. Am. Medical Informatics Assoc. 11(3): 195-206 (2004) - [j53]Huanying Gu, Yehoshua Perl, Michael Halper, James Geller, Erich J. Neuhold:
Contextual Partitioning for Comprehension of OODB Schemas. Knowl. Inf. Syst. 6(3): 315-344 (2004) - [j52]James Geller, Yehoshua Perl, Jintae Lee:
Editorial: Ontology Challenges: A Thumbnail Historical Perspective. Knowl. Inf. Syst. 6(4): 375-379 (2004) - 2003
- [j51]Li-min Liu, James Geller, Yehoshua Perl:
Enhancing OODB semantics to support browsing in an OODB vocabulary representation. Concurr. Comput. Pract. Exp. 15(9): 845-869 (2003) - [j50]Michael Halper, Li-min Liu, James Geller, Yehoshua Perl:
Frameworks for incorporating semantic relationships into object-oriented database systems. Concurr. Comput. Pract. Exp. 15(15): 1337-1362 (2003) - [j49]James Geller, Huanying Gu, Yehoshua Perl, Michael Halper:
Semantic refinement and error correction in large terminological knowledge bases. Data Knowl. Eng. 45(1): 1-32 (2003) - [j48]Yehoshua Perl, James Geller:
Research on structural issues of the UMLS - past, present, and future. J. Biomed. Informatics 36(6): 409-413 (2003) - [j47]Li Zhang, Yehoshua Perl, Michael Halper, James Geller:
Designing metaschemas for the UMLS enriched semantic network. J. Biomed. Informatics 36(6): 433-449 (2003) - [j46]James J. Cimino, Hua Min, Yehoshua Perl:
Consistency across the hierarchies of the UMLS Semantic Network and Metathesaurus. J. Biomed. Informatics 36(6): 450-461 (2003) - 2002
- [j45]Yehoshua Perl, Zong Chen, Michael Halper, James Geller, Li Zhang, Yi Peng:
The cohesive metaschema: a higher-level abstraction of the UMLS Semantic Network. J. Biomed. Informatics 35(3): 194-212 (2002) - [j44]Zong Chen, Yehoshua Perl, Michael Halper, James Geller, Huanying Gu:
Partitioning the UMLS semantic network. IEEE Trans. Inf. Technol. Biomed. 6(2): 102-108 (2002) - [j43]James Geller, Yehoshua Perl, Michael Halper, Zong Chen, Huanying Gu:
Evaluation and application of a semantic network partition. IEEE Trans. Inf. Technol. Biomed. 6(2): 109-115 (2002) - [j42]Li-min Liu, Michael Halper, James Geller, Yehoshua Perl:
Using OODB Modeling to Partition a Vocabulary in Structurally and Semantically Uniform Concept Groups. IEEE Trans. Knowl. Data Eng. 14(4): 850-866 (2002) - [c32]Huanying Helen Gu, Hua Min, Yi Peng, Li Zhang, Yehoshua Perl:
Using the metaschema to audit UMLS classification errors. AMIA 2002 - [c31]Yi Peng, Michael Halper, Yehoshua Perl, James Geller:
Auditing the UMLS for redundant classifications. AMIA 2002 - [c30]Li Zhang, Yehoshua Perl, Michael Halper, James Geller, James J. Cimino:
Enriching the structure of the UMLS semantic network. AMIA 2002 - 2001
- [c29]Michael Halper, Zong Chen, James Geller, Yehoshua Perl:
A metaschema of the UMLS based on a partition of its semantic network. AMIA 2001 - [c28]James Geller, Yehoshua Perl, Li-min Liu, C. Rush, Michael Halper:
The Importance of Ownership for E-Commerce. DS-9 2001: 311-326 - 2000
- [j41]Huanying Gu, Yehoshua Perl, James Geller, Michael Halper, Li-min Liu, James J. Cimino:
Research Paper: Representing the UMLS as an Object-oriented Database: Modeling Issues and Advantages. J. Am. Medical Informatics Assoc. 7(1): 66-80 (2000) - [c27]Zong Chen, Michael Halper, James Geller, Yehoshua Perl:
Partitioning the Semantic Network of the UMLS. AMIA 2000 - [c26]Huanying Helen Gu, Yehoshua Perl, Michael Halper, James Geller, Feng-shen Kuo, James J. Cimino:
How to Partition a Complex Schema of a Medical Terminology. AMIA 2000
1990 – 1999
- 1999
- [j40]Huanying Gu, Yehoshua Perl, James Geller, Michael Halper, Mansnimar Singh:
A methodology for partitioning a vocabulary hierarchy into trees. Artif. Intell. Medicine 15(1): 77-98 (1999) - [j39]Li-min Liu, Michael Halper, James Geller, Yehoshua Perl:
Controlled Vocabularies in OODBs: Modeling Issues and Implementation. Distributed Parallel Databases 7(1): 37-65 (1999) - [j38]Huanying Gu, Michael Halper, James Geller, Yehoshua Perl:
Model Formulation: Benefits of an Object-oriented Database Representation for Controlled Medical Terminologies. J. Am. Medical Informatics Assoc. 6(4): 283-303 (1999) - [c25]Huanying Gu, Yehoshua Perl, James Geller, Michael Halper, Li-min Liu, James J. Cimino:
Modeling the UMLS using an OODB. AMIA 1999 - 1998
- [j37]Michael Halper, James Geller, Yehoshua Perl:
An OODB Part-Whole Model: Semantics, Notation and Implementation. Data Knowl. Eng. 27(1): 59-95 (1998) - [j36]Ronald I. Becker, David Nassimi, Yehoshua Perl:
The New Class of g-Chain Periodic Sorters. J. Parallel Distributed Comput. 54(2): 206-222 (1998) - [j35]Ashish Mehta, James Geller, Yehoshua Perl, Erich J. Neuhold:
The OODB Path-Method Generator (PMG) Using Access Weights and Precomputed Access Relevance. VLDB J. 7(1): 25-47 (1998) - [c24]Huanying Gu, Li-min Liu, Michael Halper, James Geller, Yehoshua Perl:
Converting an integrated hospital formulary into an object-oriented database representation. AMIA 1998 - 1997
- [c23]Huanying Gu, Yehoshua Perl, James Geller, Michael Halper, James J. Cimino, Mansnimar Singh:
Partitioning a vocabulary's IS-A hierarchy into trees. AMIA 1997 - 1996
- [j34]Ashid Metha, James Geller, Yehoshua Perl, Peter Fankhauser:
Computing Access Relevance for Path-Method Generation in OODBs and IM-OODB. J. Intell. Inf. Syst. 7(1): 75-100 (1996) - [c22]Li-min Liu, Michael Halper, Huanying Gu, James Geller, Yehoshua Perl:
Modeling a Vocabulary in an Object-Oriented Database. CIKM 1996: 179-188 - [c21]Yehoshua Perl, James Geller, Huanying Gu:
Identifying a Forest Hierarchy in an OODB Specification Hierarchy Satisfying Disciplined Modeling. CoopIS 1996: 182-195 - 1995
- [j33]Ronald I. Becker, Yehoshua Perl:
The Shifting Algorithm Technique for the Partitioning of Trees. Discret. Appl. Math. 62(1-3): 15-34 (1995) - 1994
- [c20]Michael Halper, James Geller, Yehoshua Perl, Wolfgang Klas:
Integrating a Part Relationship Into an Open OODB System Using Metaclasses. CIKM 1994: 10-17 - [c19]David Nassimi, Yehoshua Perl, Ronald I. Becker:
The Generalized Class of g-Chaln Periodic Sorting Networks. IPPS 1994: 424-432 - [c18]Oscar Yang, Michael Halper, James Geller, Yehoshua Perl:
The OODB Ownership Relationship. OOIS 1994: 278-291 - 1993
- [j32]Mario Lucertini, Yehoshua Perl, Bruno Simeone:
Most Uniform Path Partitioning and its Use in Image Processing. Discret. Appl. Math. 42(2): 227-256 (1993) - [j31]Eliezer Agasi, Ronald I. Becker, Yehoshua Perl:
A Shifting Algorithm for Constrained min-max Partition on Trees. Discret. Appl. Math. 45(1): 1-28 (1993) - [j30]James Geller, Yehoshua Perl, Philip Cannata, Amit P. Sheth, Erich J. Neuhold:
Structural integration: Concepts and case study. J. Syst. Integr. 3(2): 133-161 (1993) - [c17]Ashish Mehta, James Geller, Yehoshua Perl, Erich J. Neuhold:
The OODB Path-Method Generator (PMG) Using Precomputed Access Relevance. CIKM 1993: 596-605 - [c16]Michael Halper, James Geller, Yehoshua Perl:
Value Propagation in Object-Oriented Database Part Hierarchies. CIKM 1993: 606-614 - [c15]Ashish Mehta, James Geller, Yehoshua Perl, Peter Fankhauser:
Computing Access Relevance to Support Path-Method Generation in Interoperable Multi-OODB. RIDE-IMS 1993: 144-151 - [c14]Ronald I. Becker, David Nassimi, Yehoshua Perl:
The New Class of g-Chain Periodic Sorters. SPAA 1993: 356-364 - 1992
- [j29]James Geller, Yehoshua Perl, Erich J. Neuhold, Amit P. Sheth:
Structural schema integration with full and partial correspondence using the Dual Model. Inf. Syst. 17(6): 443-464 (1992) - [j28]Yehoshua Perl, Loizos Gabriel:
Arithmetic Interpolation Search for Alphabetic Tables. IEEE Trans. Computers 41(4): 493-499 (1992) - [c13]Michael Halper, James Geller, Yehoshua Perl:
"Part" Relations for Object-Oriented Databases. ER 1992: 406-422 - [c12]Michael Halper, James Geller, Yehoshua Perl, Erich J. Neuhold:
A Graphical Schema Representation for Object-Oriented Databases. IDS 1992: 282-307 - 1991
- [j27]James Geller, Yehoshua Perl, Erich J. Neuhold:
Structure and Semantics in OODB Class Specifications. SIGMOD Rec. 20(4): 40-43 (1991) - [c11]Yehoshua Perl, Venkat Maram, Nageshwar Kadakuntla:
The Cascading of the LZW Compression Algorithm with Arithmetic Coding. Data Compression Conference 1991: 277-286 - [c10]James Geller, Yehoshua Perl, Erich J. Neuhold:
Structural Schema Integration in Heterogeneous Multi-Database Systems using the Dual Model. RIDE-IMS 1991: 200-203 - 1990
- [j26]James McHugh, Yehoshua Perl:
Best location of service centers in a treelike network under budget constraints. Discret. Math. 86(1-3): 199-214 (1990) - [c9]Erich J. Neuhold, James Geller, Yehoshua Perl, Volker Turau:
A Theoretical Underlying Dual Model for Knowledge-Based Systems. ICSI 1990: 96-103
1980 – 1989
- 1989
- [j25]Yehoshua Perl:
Better understanding of batcher's merging networks. Discret. Appl. Math. 25(3): 257-271 (1989) - [j24]Martin Dowd, Yehoshua Perl, Larry Rudolph, Michael E. Saks:
The periodic balanced sorting network. J. ACM 36(4): 738-757 (1989) - [c8]Yehoshua Perl, Ashish Mehta:
Cascading LZW Algorithm with Huffman Coding: A Variable to Variable Length Compression Algorithm. Great Lakes Computer Science Conference 1989: 170-178 - [c7]Mario Lucertini, Yehoshua Perl, Bruno Simeone:
Image enhancement by path partitioning. Recent Issues in Pattern Analysis and Recognition 1989: 12-22 - 1987
- [j23]Yehoshua Perl:
Digraphs with maximum number of paths and cycles. Networks 17(3): 295-305 (1987) - 1985
- [j22]Ronald I. Becker, Yehoshua Perl:
Finding the two-core of a tree. Discret. Appl. Math. 11(2): 103-113 (1985) - [j21]Yehoshua Perl, Uzi Vishkin:
Efficient implementation of a shifting algorithm. Discret. Appl. Math. 12(1): 71-80 (1985) - [j20]Derek G. Corneil, Yehoshua Perl, Lorna K. Stewart:
A Linear Recognition Algorithm for Cographs. SIAM J. Comput. 14(4): 926-934 (1985) - [c6]Yaacov Choueka, Shmuel T. Klein, Yehoshua Perl:
Efficient Variants of Huffman Codes in High Level Languages. SIGIR 1985: 122-130 - 1984
- [j19]Derek G. Corneil, Yehoshua Perl:
Clustering and domination in perfect graphs. Discret. Appl. Math. 9(1): 27-39 (1984) - [j18]Yehoshua Perl:
Optimum Split Trees. J. Algorithms 5(3): 367-374 (1984) - [j17]D. Ronen, Yehoshua Perl:
Heuristics for finding a maximum number of disjoint bounded paths. Networks 14(4): 531-544 (1984) - 1983
- [j16]Aviezri S. Fraenkel, Moshe Mor, Yehoshua Perl:
Is Text Compression by Prefixes and Suffixes Practical? Acta Informatica 20: 371-389 (1983) - [j15]Ronald I. Becker, Yehoshua Perl:
Shifting Algorithms for Tree Partitioning with General Weighting Functions. J. Algorithms 4(2): 101-120 (1983) - [j14]Yehoshua Perl, Marc Snir:
Circuit partitioning with size and connection constraints. Networks 13(3): 365-375 (1983) - [c5]Martin Dowd, Yehoshua Perl, Michael E. Saks:
The Balanced Sorting Network. PODC 1983: 161-172 - 1982
- [j13]Ronald I. Becker, Stephen R. Schach, Yehoshua Perl:
A Shifting Algorithm for Min-Max Tree Partitioning. J. ACM 29(1): 58-67 (1982) - [j12]Alon Itai, Yehoshua Perl, Yossi Shiloach:
The complexity of finding maximum disjoint paths with length constraints. Networks 12(3): 277-286 (1982) - [j11]Yehoshua Perl, Shmuel Zaks:
On the Complexity of Edge Labelings for Trees. Theor. Comput. Sci. 19: 1-16 (1982) - [c4]Aviezri S. Fraenkel, Moshe Mor, Yehoshua Perl:
Is Text Compression by Prefizes and Suffixes Practical? SIGIR 1982: 289-311 - 1981
- [j10]Yehoshua Perl, Shmuel Zaks:
Deficient generalized Fibonacci maximum path graphs. Discret. Math. 34(2): 153-164 (1981) - [j9]Yehoshua Perl, Stephen R. Schach:
Max-Min Tree Partitioning. J. ACM 28(1): 5-15 (1981) - [j8]Shlomo Moran, Yehoshua Perl:
The Complexity of Identifying Redundant and Essential Elements. J. Algorithms 2(1): 22-30 (1981) - [j7]Yehoshua Perl, Yaacov Yesha:
Mean flow scheduling and optimal construction of a treelike communication network. Networks 11(1): 87-92 (1981) - [c3]Yehoshua Perl, Yossi Shiloach:
Efficient Optimization of Monotonic Functions on Trees. CAAP 1981: 332-339 - 1980
- [c2]Ronald I. Becker, Yehoshua Perl, Stephen R. Schach:
A Shifting Algorithm for Min-Max Tree Partitioning. ICALP 1980: 64-75
1970 – 1979
- 1979
- [j6]Martin Charles Golumbic, Yehoshua Perl:
Generalized fibonacci maximum path graphs. Discret. Math. 28(3): 237-245 (1979) - 1978
- [j5]Yehoshua Perl, Alon Itai, Haim Avni:
Interpolation Search - A Log Log N Search. Commun. ACM 21(7): 550-553 (1978) - [j4]Yehoshua Perl, Yossi Shiloach:
Finding Two Disjoint Paths Between Two Pairs of Vertices in a Graph. J. ACM 25(1): 1-9 (1978) - [c1]Yehoshua Perl:
Shortest Paths in a Network with Two Cost Functions. Jerusalem Conference on Information Technology 1978: 211-215 - 1977
- [j3]Yehoshua Perl, Edward M. Reingold:
Understanding the Complexity of Interpolation Search. Inf. Process. Lett. 6(6): 219-222 (1977) - 1976
- [j2]Yehoshua Perl, Yuri Breitbart:
Optimal sequential arrangement of evaluation trees for boolean functions. Inf. Sci. 11(1): 1-12 (1976) - 1975
- [j1]Yehoshua Perl, M. R. Garey, Shimon Even:
Efficient Generation of Optimal Prefix Code: Equiprobable Words Using Unequal Cost Letters. J. ACM 22(2): 202-214 (1975)
Coauthor Index
[c80] [j108] [c78] [j105] [j103] [j102] [j101] [c77] [c76] [c75] [c74] [j99] [j98] [c73] [c72] [c71] [c70] [c69] [c67] [j97] [j94] [j93] [c66] [c65] [c64] [c63] [c62] [c60] [j91] [j90] [j89] [c55] [j87] [j86] [j85] [c54] [c52] [j82] [c51] [c49] [c48] [c47] [c46] [j80] [j79] [j78] [c44] [c43] [c42] [j75] [j74] [j73] [j71] [j68] [j67] [j66] [j65] [c40] [c39] [j64] [j62] [j61] [c35] [j59] [c33] [j58] [j57] [j56] [j54] [j53] [j52] [j51] [j50] [j49] [j48] [j47] [j45] [j44] [j43] [j42] [c31] [c30] [c29] [c28] [j41] [c27] [c26] [j40] [j39] [j38] [c25] [j37] [j35] [c24] [c23] [j34] [c22] [c21] [c20] [c18] [j30] [c17] [c16] [c15] [j29] [c13] [c12] [j27] [c10] [c9]
Huanying Gu
aka: Huanying Helen Gu
aka: Huanying Helen Gu
[j109] [j101] [j100] [c73] [c70] [c68] [c62] [j91] [c56] [j88] [j84] [j83] [c51] [c49] [c47] [j81] [j80] [j77] [c42] [c41] [j76] [j75] [j71] [j70] [j69] [j68] [j67] [j65] [c40] [c39] [j63] [c38] [c37] [j62] [j60] [c34] [j59] [c33] [j58] [j57] [j56] [j54] [j53] [j50] [j49] [j47] [j45] [j44] [j43] [j42] [c31] [c30] [c29] [c28] [j41] [c27] [c26] [j40] [j39] [j38] [c25] [j37] [c24] [c23] [c22] [c20] [c18] [c16] [c13] [c12]
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