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ORCIDLiming Cai
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- affiliation: University of Georgia, Athens, USA
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Journal Articles
- 2024
[j42]Xixia Ma, Liming Cai:
Modeling the impact of directional movement on mosquito population suppress. Appl. Math. Lett. 151: 108973 (2024)- [j41]Qian Wei, Liming Cai:
Bifurcation analysis of an algal blooms dynamical model in trophic interaction. J. Appl. Math. Comput. 70(4): 3291-3330 (2024) - 2023
- [j40]Chuanyun Ouyang, Liming Cai
, Bin Liu, Tianxiang Zhang:
An improved wavelet threshold denoising approach for surface electromyography signal. EURASIP J. Adv. Signal Process. 2023(1): 108 (2023) - [j39]Xiaoguang Li, Xuan Zou, Liming Cai, Yuming Chen:
Global dynamics of a vector-borne disease model with direct transmission and differential susceptibility. J. Appl. Math. Comput. 69(1): 381-402 (2023) - [j38]Xiankai Cheng, Benkun Bao, Weidong Cui, Shuai Liu, Jun Zhong, Liming Cai, Hongbo Yang:
Classification and Analysis of Human Body Movement Characteristics Associated with Acrophobia Induced by Virtual Reality Scenes of Heights. Sensors 23(12): 5482 (2023) - 2022
- [j37]Jun Zhong, Yongfeng Liu, Xiankai Cheng, Liming Cai, Weidong Cui, Dong Hai:
Gated Recurrent Unit Network for Psychological Stress Classification Using Electrocardiograms from Wearable Devices. Sensors 22(22): 8664 (2022) - [j36]Gong Cheng, Liming Cai, Chunbo Lang, Xiwen Yao, Jinyong Chen, Lei Guo, Junwei Han:
SPNet: Siamese-Prototype Network for Few-Shot Remote Sensing Image Scene Classification. IEEE Trans. Geosci. Remote. Sens. 60: 1-11 (2022) - [j35]Fei He, Qianshan Yu, Liming Cai:
Efficient Summary Reuse for Software Regression Verification. IEEE Trans. Software Eng. 48(4): 1417-1431 (2022) - 2021
- [j34]Mohammad Mohebbi, Liang Ding, Russell L. Malmberg, Liming Cai:
Human MicroRNA Target Prediction via Multi-Hypotheses Learning. J. Comput. Biol. 28(2): 117-132 (2021) - 2020
- [j33]Liming Cai, Gaoxu Fan, Chayu Yang, Jin Wang:
Modeling and analyzing cholera transmission dynamics with vaccination age. J. Frankl. Inst. 357(12): 8008-8034 (2020) - 2018
- [j32]Mohammad Mohebbi, Liang Ding, Russell L. Malmberg, Cory Momany, Khaled Rasheed, Liming Cai:
Accurate prediction of human miRNA targets via graph modeling of the miRNA-target duplex. J. Bioinform. Comput. Biol. 16(4): 1850013:1-1850013:18 (2018) - 2016
- [j31]Yinglei Song, Junfeng Qu, Ying Xu, Liming Cai:
A New Graph Theoretic Approach for Protein Threading. Fundam. Informaticae 145(2): 151-170 (2016) - 2015
- [j30]Xiuzhen Huang, Steven F. Jennings, Barry Bruce, Alison Buchan, Liming Cai, Pengyin Chen, Carole L. Cramer, Weihua Guan, Uwe Hilgert, Hongmei Jiang, Zenglu Li, Gail McClure, Donald F. McMullen, Bindu Nanduri, Andy D. Perkins, Bhanu Rekepalli, Saeed Salem, Jennifer Specker, Karl Walker, Donald C. Wunsch, Donghai Xiong, Shuzhong Zhang, Yu Zhang, Zhongming Zhao, Jason H. Moore:
Big data - a 21st century science Maginot Line? No-boundary thinking: shifting from the big data paradigm. BioData Min. 8: 7 (2015) - [j29]Liang Ding, Xingran Xue, Sal LaMarca, Mohammad Mohebbi, Abdul Samad, Russell L. Malmberg, Liming Cai:
Accurate prediction of RNA nucleotide interactions with backbone k-tree model. Bioinform. 31(16): 2660-2667 (2015) - 2014
- [j28]Liming Cai, Shuli Guo, Shuping Wang:
Analysis of an extended HIV/AIDS epidemic model with treatment. Appl. Math. Comput. 236: 621-627 (2014) - [j27]Liming Cai, Shangbing Ai, Jia Li:
Dynamics of Mosquitoes Populations with Different Strategies for Releasing Sterile Mosquitoes. SIAM J. Appl. Math. 74(6): 1786-1809 (2014) - 2012
- [j26]Dong Zhang, Xingran Xue, Russell L. Malmberg, Liming Cai:
TRFolder-W: a web server for telomerase RNA structure prediction in yeast genomes. Bioinform. 28(20): 2696-2697 (2012) - [j25]Yingfeng Wang, Amir Manzour, Pooya Shareghi, Timothy I. Shaw, Ying-Wai Li, Russell L. Malmberg, Liming Cai:
Stable stem enabled Shannon entropies distinguish non-coding RNAs from random backgrounds. BMC Bioinform. 13(S-5): S1 (2012) - 2011
- [j24]Leilei Guo, Dong Zhang, Yingfeng Wang, Russell L. Malmberg, Michael J. McEachern, Liming Cai:
TRFolder: computational prediction of novel telomerase RNA structures in yeast genomes. Int. J. Bioinform. Res. Appl. 7(1): 63-81 (2011) - [j23]Timothy I. Shaw, Amir Manzour, Yingfeng Wang, Russell L. Malmberg, Liming Cai:
Analyzing Modular RNA Structure reveals Low Global Structural Entropy in microRNA Sequence. J. Bioinform. Comput. Biol. 9(2): 283-298 (2011) - 2010
- [j22]Liming Cai, Xiuzhen Huang:
Fixed-Parameter Approximation: Conceptual Framework and Approximability Results. Algorithmica 57(2): 398-412 (2010) - [j21]Russell L. Malmberg, Timothy I. Shaw, Liming Cai:
RNApasta: a tool for analysis of RNA structural alignments. Int. J. Bioinform. Res. Appl. 6(6): 571-583 (2010) - 2009
- [j20]Yingfeng Wang, Zhibin Huang, Yong Wu, Russell L. Malmberg, Liming Cai:
RNATOPS-W: a web server for RNA structure searches of genomes. Bioinform. 25(8): 1080-1081 (2009) - 2008
- [j19]Zhibin Huang, Yong Wu, Joseph Robertson, Liang Feng, Russell L. Malmberg, Liming Cai:
Fast and accurate search for non-coding RNA pseudoknot structures in genomes. Bioinform. 24(20): 2281-2287 (2008) - [j18]Liming Cai, Xiuzhen Huang, Chunmei Liu, Frances A. Rosamond, Yinglei Song:
Parameterized Complexity and Biopolymer Sequence Comparison. Comput. J. 51(3): 270-291 (2008) - 2007
- [j17]Liming Cai, Michael R. Fellows, David W. Juedes, Frances A. Rosamond:
The Complexity of Polynomial-Time Approximation. Theory Comput. Syst. 41(3): 459-477 (2007) - 2006
- [j16]Yinglei Song, Chunmei Liu, Russell L. Malmberg, Congzhou He, Liming Cai:
Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots. Int. J. Bioinform. Res. Appl. 2(3): 289-304 (2006) - [j15]Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai:
Efficient Parameterized Algorithms for Biopolymer Structure-Sequence Alignment. IEEE ACM Trans. Comput. Biol. Bioinform. 3(4): 423-432 (2006) - 2005
- [j14]Dongsheng Che, Shane T. Jensen, Liming Cai, Jun S. Liu:
BEST: Binding-site Estimation Suite of Tools. Bioinform. 21(12): 2909-2911 (2005) - [j13]Ying Xu, Liming Cai, Zhiping Weng:
Preface. J. Comput. Sci. Technol. 20(4): 433 (2005) - [j12]Yinglei Song, Jizhen Zhao, Chunmei Liu, Kan Liu, Russell L. Malmberg, Liming Cai:
RNA Structural Homology Search with a Succinct Stochastic Grammar Model. J. Comput. Sci. Technol. 20(4): 454-464 (2005) - [j11]Chunmei Liu, Yinglei Song, Russell L. Malmberg, Liming Cai:
Profiling and Searching for RNA Pseudoknot Structures in Genomes. Trans. Comp. Sys. Biology 2: 37-47 (2005) - 2003
- [j10]Liming Cai, David W. Juedes:
On the existence of subexponential parameterized algorithms. J. Comput. Syst. Sci. 67(4): 789-807 (2003) - 2002
- [j9]Liming Cai, David W. Juedes, Iyad A. Kanj:
The inapproximability of non-NP-hard optimization problems. Theor. Comput. Sci. 289(1): 553-571 (2002) - 1998
- [j8]Liming Cai, Jianer Chen, Johan Håstad:
Circuit Bottom Fan-In and Computational Power. SIAM J. Comput. 27(2): 341-355 (1998) - 1997
- [j7]Liming Cai, Jianer Chen, Rodney G. Downey, Michael R. Fellows:
On the parameterized complexity of short computation and factorization. Arch. Math. Log. 36(4-5): 321-337 (1997) - [j6]Liming Cai, Jianer Chen, Rodney G. Downey, Michael R. Fellows:
Advice Classes of Parameterized Tractability. Ann. Pure Appl. Log. 84(1): 119-138 (1997) - [j5]Liming Cai, Jianer Chen:
On Fixed-Parameter Tractability and Approximability of NP Optimization Problems. J. Comput. Syst. Sci. 54(3): 465-474 (1997) - [j4]Liming Cai, Jianer Chen:
On the Amount of Nondeterminism and the Power of Verifying. SIAM J. Comput. 26(3): 733-750 (1997) - 1996
- [j3]Liming Cai:
The Computational Complexity of Linear PCGSs. Comput. Artif. Intell. 15(2-3): 199-210 (1996) - 1995
- [j2]Liming Cai, Jianer Chen, Rodney G. Downey, Michael R. Fellows:
On the Structure of Parameterized Problems in NP. Inf. Comput. 123(1): 38-49 (1995) - [j1]Liming Cai, Jianer Chen:
On Input Read-Modes of Alternating Turing Machines. Theor. Comput. Sci. 148(1): 33-55 (1995)
Conference and Workshop Papers
- 2024
- [c36]Liming Cai, Shuhao Yan, Chuanyun Ouyang, Tianxiang Zhang, Jun Zhu, Li Chen, Hui Liu:
Associating Endpoint Accuracy and Similarity of Muscle Synergies. BIOSTEC (1) 2024: 683-694 - 2021
- [c35]Zhisen Wang, Juzhong Zhang, Yuyi Chu, Qing Zha, Liming Cai, Tingfeng Ye, Yuanyuan Qin, Hongli Dong, Hongbo Yang:
Development of A Low-Inertia 5-DOF Hybrid Manipulator for Moxibustion. ICAR 2021: 378-383 - 2020
- [c34]Zahra Jandaghi, Liming Cai:
On Graph Learning with Neural Networks. LOD (2) 2020: 516-528 - 2019
- [c33]Mohammad Mohebbi, Liang Ding, Russell L. Malmberg, Liming Cai:
A Multi-hypothesis Learning Algorithm for Human and Mouse miRNA Target Prediction. ICCABS 2019: 102-120 - [c32]Yunlu Wang, Duo Li, Menghan Hu, Liming Cai:
Non-local Recoloring Algorithm for Color Vision Deficiencies with Naturalness and Detail Preserving. IFTC 2019: 23-34 - 2016
- [c31]Mohammad Mohebbi, Liang Ding, Russell L. Malmberg, Cory Momany, Khaled Rasheed, Liming Cai:
Accurate prediction of human miRNA targets via graph modeling of miRNA-target duplex. ICCABS 2016: 1 - [c30]Ying Sun, Willie L. Rogers, Katrien M. Devos, Liming Cai, Russell L. Malmberg:
Genome-wide identification and evolutionary analysis of long non-coding RNAs in cereals. ICCABS 2016: 1 - 2014
- [c29]Liang Ding, Xingran Xue, Sal LaMarca, Mohammad Mohebbi, Abdul Samad, Russell L. Malmberg, Liming Cai:
Ab initio Prediction of RNA Nucleotide Interactions with Backbone k-Tree Model. CMSR@ECCB 2014: 25-42 - [c28]Liang Ding, Abdul Samad, Xingran Xue, Xiuzhen Huang, Russell L. Malmberg, Liming Cai:
Stochastic k-Tree Grammar and Its Application in Biomolecular Structure Modeling. LATA 2014: 308-322 - 2013
- [c27]Anuj Srivastava, Xiaoyu Zhang, Sal LaMarca, Liming Cai, Russell L. Malmberg:
Patterns of Chromatin-Modifications Discriminate Different Genomic Features in Arabidopsis. ISBRA 2013: 52-63 - [c26]Liang Ding, Joseph Robertson, Russell L. Malmberg, Liming Cai:
Protein Closed Loop Prediction from Contact Probabilities. ISBRA 2013: 199-210 - 2011
- [c25]Pooya Shareghi, Yingfeng Wang, Russell L. Malmberg, Liming Cai:
Simultaneous Prediction of RNA Secondary Structure and Helix Coaxial Stacking. BIBM 2011: 89-95 - [c24]Yingfeng Wang, Amir Manzour, Pooya Shareghi, Timothy I. Shaw, Ying-Wai Li, Russell L. Malmberg, Liming Cai:
Stable stem enabled shannon entropies distinguish non-coding RNAs from random backgrounds. ICCABS 2011: 184-189 - 2007
- [c23]Dongsheng Che, Jizhen Zhao, Liming Cai, Ying Xu:
Operon Prediction in Microbial Genomes Using Decision Tree Approach. CIBCB 2007: 135-142 - [c22]Jizhen Zhao, Dongsheng Che, Liming Cai:
Comparative Pathway Prediction Via Unified Graph Modeling of Genomic Structure Information. ISBRA 2007: 627-637 - [c21]Jizhen Zhao, Dongsheng Che, Liming Cai:
Comparative Pathway Annotation with Protein-DNA Interaction and Operon Information via Graph Tree Decomposition. Pacific Symposium on Biocomputing 2007: 496-507 - 2006
- [c20]Jizhen Zhao, Liming Cai, Russell L. Malmberg:
Learning the Parameters of Stochastic Grammar Models for RNA Structures with Pseudoknots. GrC 2006: 170-175 - [c19]Chunmei Liu, Bo Yan, Yinglei Song, Ying Xu, Liming Cai:
Peptide sequence tag-based blind identification of post-translational modifications with point process model. ISMB (Supplement of Bioinformatics) 2006: 307-313 - [c18]Liming Cai, Xiuzhen Huang:
Fixed-Parameter Approximation: Conceptual Framework and Approximability Results. IWPEC 2006: 96-108 - [c17]Chunmei Liu, Yinglei Song, Bo Yan, Ying Xu, Liming Cai:
Fast De novo Peptide Sequencing and Spectral Alignment via Tree Decomposition. Pacific Symposium on Biocomputing 2006: 255-266 - [c16]Yinglei Song, Chunmei Liu, Russell L. Malmberg, Liming Cai:
Phylogenetic Network Inferences Through Efficient Haplotyping. WABI 2006: 68-79 - [c15]Jizhen Zhao, Russell L. Malmberg, Liming Cai:
Rapid ab initio RNA Folding Including Pseudoknots Via Graph Tree Decomposition. WABI 2006: 262-273 - 2005
- [c14]Yinglei Song, Chunmei Liu, Russell L. Malmberg, Fangfang Pan, Liming Cai:
Tree Decomposition Based Fast Search of RNA Structures Including Pseudoknots in Genomes. CSB 2005: 223-234 - [c13]Chunmei Liu, Yinglei Song, Russell L. Malmberg, Liming Cai:
Profiling and Searching for RNA Pseudoknot Structures in Genomes. International Conference on Computational Science (2) 2005: 968-975 - [c12]Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai:
Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment. WABI 2005: 376-388 - 2003
- [c11]Liming Cai, Russell L. Malmberg, Yunzhou Wu:
Stochastic modeling of RNA pseudoknotted structures: a grammatical approach. ISMB (Supplement of Bioinformatics) 2003: 66-73 - 2001
- [c10]Liming Cai, David W. Juedes:
Subexponential Parameterized Algorithms Collapse the W-Hierarchy. ICALP 2001: 273-284 - 2000
- [c9]Liming Cai, David Juedes, Evgueni Liakhovitch:
Evolutionary computation techniques for multiple sequence alignment. CEC 2000: 829-835 - 1998
- [c8]Liming Cai, David W. Juedes, Iyad A. Kanj:
The Inapproximability of Non NP-hard Optimization Problems. ISAAC 1998: 437-446 - 1997
- [c7]Karl R. Abrahamson, Liming Cai, Steve Gordon:
A Grammar Characterization of Logarithmic-Space Computation. New Trends in Formal Languages 1997: 247-255 - [c6]Liming Cai, Jianer Chen, Johan Håstad:
Circuit Bottom Fan-in and Computational Power. CCC 1997: 158-164 - 1995
- [c5]Liming Cai, Jianer Chen:
On log-Time Alternating Turing Machines of Alternation Depth k (Extended Abstract). COCOON 1995: 282-291 - [c4]Liming Cai:
The Computational Complexity of PCGS with Regular Components. Developments in Language Theory 1995: 209-219 - 1994
- [c3]Liming Cai, Jianer Chen, Rodney G. Downey, Michael R. Fellows:
On the Structure of Parameterized Problems in NP (Extended Abstract). STACS 1994: 509-520 - 1993
- [c2]Liming Cai, Jianer Chen:
On Fixed-Parameter Tractability and Approximability of NP-Hard Optimization Problems. ISTCS 1993: 118-126 - [c1]Liming Cai, Jianer Chen:
On the Amount of Nondeterminism and the Power of Verifying (Extended Abstract). MFCS 1993: 311-320
Informal and Other Publications
- 2024
- [i5]Sixiang Zhang, Aaron J. Yang, Liming Cai:
α-HMM: A Graphical Model for RNA Folding. CoRR abs/2401.03571 (2024) - [i4]Fereshteh R. Dastjerdi, Liming Cai:
Polynomial-time derivation of optimal k-tree topology from Markov networks. CoRR abs/2404.05991 (2024) - 2018
- [i3]Liang Ding, Di Chang, Russell L. Malmberg, Aaron Martínez, David Robinson, Matthew Wicker, Hongfei Yan, Liming Cai:
Efficient Learning of Optimal Markov Network Topology with k-Tree Modeling. CoRR abs/1801.06900 (2018) - [i2]Fei He, Qianshan Yu, Liming Cai:
When Regression Verification Meets CEGAR. CoRR abs/1806.04829 (2018) - 2013
- [i1]Liang Ding, Abdul Samad, Xingran Xue, Xiuzhen Huang, Liming Cai:
Polynomial kernels collapse the W-hierarchy. CoRR abs/1308.3613 (2013)
Coauthor Index
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