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ORCIDAlejandro Fernández Villaverde
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2020 – today
- 2024
[j32]Sandra Díaz-Seoane, Antonio Barreiro Blas, Alejandro Fernández Villaverde:
Corrigendum to "Controllability and accessibility analysis of nonlinear biosystems" [Computer Methods and Programs in Biomedicine 242 (2023) 107837]. Comput. Methods Programs Biomed. 245: 108015 (2024)- [i9]Alejandro F. Villaverde:
Observability rank conditions for analysing practical identifiability a priori. CoRR abs/2410.06984 (2024) - 2023
- [j31]Xabier Rey-Barreiro
, Alejandro F. Villaverde:
On the Origins and Rarity of Locally but Not Globally Identifiable Parameters in Biological Modeling. IEEE Access 11: 65457-65467 (2023) - [j30]Sandra Díaz-Seoane, Xabier Rey-Barreiro, Alejandro F. Villaverde:
STRIKE-GOLDD 4.0: user-friendly, efficient analysis of structural identifiability and observability. Bioinform. 39(1) (2023) - [j29]Gemma Massonis, Alejandro F. Villaverde, Julio R. Banga:
Improving dynamic predictions with ensembles of observable models. Bioinform. 39(1) (2023) - [j28]Xabier Rey-Barreiro, Alejandro F. Villaverde:
Benchmarking tools for a priori identifiability analysis. Bioinform. 39(2) (2023) - [j27]Sandra Díaz-Seoane, Antonio Barreiro Blas, Alejandro F. Villaverde:
Controllability and accessibility analysis of nonlinear biosystems. Comput. Methods Programs Biomed. 242: 107837 (2023) - [j26]Gemma Massonis, Alejandro F. Villaverde, Julio R. Banga:
Distilling identifiable and interpretable dynamic models from biological data. PLoS Comput. Biol. 19(10) (2023) - [j25]Alejandro F. Villaverde, Elba Raimúndez-Álvarez, Jan Hasenauer, Julio R. Banga:
Assessment of Prediction Uncertainty Quantification Methods in Systems Biology. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 1725-1736 (2023) - 2022
- [j24]José Antonio González-Prieto, Alejandro Fernández Villaverde:
Smooth Non Linear High Gain Observers for a Class of Dynamical Systems. IEEE Access 10: 3693-3704 (2022) - [j23]Alejandro F. Villaverde, Dilan Pathirana, Fabian Fröhlich, Jan Hasenauer, Julio R. Banga:
A protocol for dynamic model calibration. Briefings Bioinform. 23(1) (2022) - [j22]Alejandro F. Villaverde:
Symmetries in Dynamic Models of Biological Systems: Mathematical Foundations and Implications. Symmetry 14(3): 467 (2022) - [i8]Sandra Díaz-Seoane, Xabier Rey-Barreiro, Alejandro F. Villaverde:
STRIKE-GOLDD 4.0: user-friendly, efficient analysis of structural identifiability and observability. CoRR abs/2207.07346 (2022) - [i7]Xabier Rey-Barreiro, Alejandro F. Villaverde:
Benchmarking tools for a priori identifiability analysis. CoRR abs/2207.09745 (2022) - 2021
- [j21]Gemma Massonis, Julio R. Banga, Alejandro Fernández Villaverde:
Structural identifiability and observability of compartmental models of the COVID-19 pandemic. Annu. Rev. Control. 51: 441-459 (2021) - [j20]Leonard Schmiester, Yannik Schälte, Frank T. Bergmann, Tacio Camba, Erika Dudkin, Janine Egert, Fabian Fröhlich, Lara Fuhrmann, Adrian L. Hauber, Svenja Kemmer, Polina A. Lakrisenko, Carolin Loos, Simon Merkt, Wolfgang Müller, Dilan Pathirana, Elba Raimúndez-Álvarez, Lukas Refisch, Marcus Rosenblatt, Paul Stapor, Philipp Städter, Dantong Wang, Franz-Georg Wieland, Julio R. Banga, Jens Timmer, Alejandro F. Villaverde, Sven Sahle, Clemens Kreutz, Jan Hasenauer, Daniel Weindl:
PEtab - Interoperable specification of parameter estimation problems in systems biology. PLoS Comput. Biol. 17(1) (2021) - [j19]Alejandro Fernández Villaverde, Gemma Massonis:
On testing structural identifiability by a simple scaling method: Relying on scaling symmetries can be misleading. PLoS Comput. Biol. 17(10) (2021) - 2020
- [j18]Gemma Massonis, Alejandro Fernández Villaverde:
Finding and Breaking Lie Symmetries: Implications for Structural Identifiability and Observability in Biological Modelling. Symmetry 12(3): 469 (2020) - [i6]Nerea Martínez, Alejandro Fernández Villaverde:
Nonlinear observability algorithms with known and unknown inputs: analysis and implementation. CoRR abs/2006.00859 (2020) - [i5]Gemma Massonis, Julio R. Banga, Alejandro Fernández Villaverde:
Repairing dynamic models: a method to obtain identifiable and observable reparameterizations with mechanistic insights. CoRR abs/2012.09826 (2020)
2010 – 2019
- 2019
- [j17]Alejandro Fernández Villaverde, Fabian Fröhlich, Daniel Weindl, Jan Hasenauer, Julio R. Banga:
Benchmarking optimization methods for parameter estimation in large kinetic models. Bioinform. 35(5): 830-838 (2019) - [j16]Alejandro Fernández Villaverde, Carlo Cosentino, Attila Gábor, Gábor Szederkényi:
Computational Methods for Identification and Modelling of Complex Biological Systems. Complex. 2019: 4951650:1-4951650:3 (2019) - [j15]Alejandro Fernández Villaverde:
Observability and Structural Identifiability of Nonlinear Biological Systems. Complex. 2019: 8497093:1-8497093:12 (2019) - [j14]Alejandro Fernández Villaverde, Neil D. Evans, Michael J. Chappell, Julio R. Banga:
Input-Dependent Structural Identifiability of Nonlinear Systems. IEEE Control. Syst. Lett. 3(2): 272-277 (2019) - 2018
- [j13]Alejandro Fernández Villaverde, Kolja Becker, Julio R. Banga:
PREMER: A Tool to Infer Biological Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 15(4): 1193-1202 (2018) - 2017
- [j12]Attila Gábor, Alejandro Fernández Villaverde, Julio R. Banga:
Parameter identifiability analysis and visualization in large-scale kinetic models of biosystems. BMC Syst. Biol. 11(1): 54:1-54:16 (2017) - [j11]David Henriques, Alejandro Fernández Villaverde, Miguel Rocha, Julio Saez-Rodriguez, Julio R. Banga:
Data-driven reverse engineering of signaling pathways using ensembles of dynamic models. PLoS Comput. Biol. 13(2) (2017) - [j10]Alejandro Fernández Villaverde, Julio R. Banga:
Dynamical compensation and structural identifiability of biological models: Analysis, implications, and reconciliation. PLoS Comput. Biol. 13(11) (2017) - [i4]Alejandro Fernández Villaverde, Julio R. Banga:
Dynamical compensation in biological systems as a particular case of structural non-identifiability. CoRR abs/1701.02562 (2017) - [i3]Alejandro Fernández Villaverde, Julio R. Banga:
Dynamical compensation and structural identifiability: analysis, implications, and reconciliation. CoRR abs/1703.08415 (2017) - 2016
- [j9]Alejandro Fernández Villaverde, Antonio Barreiro, Antonis Papachristodoulou:
Structural Identifiability of Dynamic Systems Biology Models. PLoS Comput. Biol. 12(10) (2016) - [c3]Alejandro Fernández Villaverde, Kolja Becker, Julio R. Banga:
PREMER: Parallel Reverse Engineering of Biological Networks with Information Theory. CMSB 2016: 323-329 - 2015
- [j8]Abel Folch-Fortuny, Alejandro Fernández Villaverde, Alberto Ferrer, Julio R. Banga:
Enabling network inference methods to handle missing data and outliers. BMC Bioinform. 16: 283:1-283:12 (2015) - [j7]Alejandro Fernández Villaverde, David Henriques, Kieran Smallbone, Sophia Bongard, Joachim Schmid, Damjan Cicin-Sain, Anton Crombach, Julio Saez-Rodriguez, Klaus Mauch, Eva Balsa-Canto, Pedro Mendes, Johannes Jaeger, Julio R. Banga:
BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology. BMC Syst. Biol. 9: 8 (2015) - [j6]Alejandro Fernández Villaverde, Sophia Bongard, Klaus Mauch, Dirk Müller, Eva Balsa-Canto, Joachim Schmid, Julio R. Banga:
A consensus approach for estimating the predictive accuracy of dynamic models in biology. Comput. Methods Programs Biomed. 119(1): 17-28 (2015) - 2014
- [j5]Jose A. Egea, David Henriques, Thomas Cokelaer, Alejandro Fernández Villaverde, Aidan MacNamara, Diana-Patricia Danciu, Julio R. Banga, Julio Saez-Rodriguez:
MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics. BMC Bioinform. 15: 136 (2014) - [c2]Alejandro Fernández Villaverde, Sophia Bongard, Klaus Mauch, Dirk Müller, Eva Balsa-Canto, Joachim Schmid, Julio R. Banga:
High-Confidence Predictions in Systems Biology Dynamic Models. PACBB 2014: 161-171 - [i2]Alejandro Fernández Villaverde, David Henriques, Kieran Smallbone, Sophia Bongard, Joachim Schmid, Damjan Cicin-Sain, Anton Crombach, Julio Saez-Rodriguez, Klaus Mauch, Eva Balsa-Canto, Pedro Mendes, Johannes Jaeger, Julio R. Banga:
BioPreDyn-bench: benchmark problems for kinetic modelling in systems biology. CoRR abs/1407.5856 (2014) - 2013
- [i1]Jose A. Egea, David Henriques, Thomas Cokelaer, Alejandro Fernández Villaverde, Julio R. Banga, Julio Saez-Rodriguez:
MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics. CoRR abs/1311.5735 (2013) - 2012
- [j4]Alejandro Fernández Villaverde, Jose A. Egea, Julio R. Banga:
A cooperative strategy for parameter estimation in large scale systems biology models. BMC Syst. Biol. 6: 75 (2012) - 2011
- [j3]Alejandro Fernández Villaverde, Antonio Barreiro Blas, Joaquín Carrasco, Alfonso Baños Torrico:
Reset Control for Passive Bilateral Teleoperation. IEEE Trans. Ind. Electron. 58(7): 3037-3045 (2011) - 2010
- [j2]Alejandro Fernández Villaverde, Antonio Barreiro, Cesáreo Raimúndez:
Passive position error correction in Internet-based teleoperation. Autom. 46(11): 1884-1890 (2010) - [j1]John Ross, Alejandro Fernández Villaverde:
Thermodynamics and Fluctuations Far From Equilibrium. Entropy 12(10): 2199-2243 (2010)
2000 – 2009
- 2009
- [c1]Cesáreo Raimúndez, Antonio Barreiro, Alejandro Fernández Villaverde:
Reset control for injecting dissipation into port-hamiltonian systems. ECC 2009: 4919-4924
Coauthor Index
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