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Books and Theses
- 2016
[b1]David Henriques:
Network inference for logic-based ordinary differential equations. University of Minho, Portugal, 2016
Journal Articles
- 2023
- [j10]Filipe Monteiro, Vasco Bexiga, Paulo Chaves Ferreira
, Joaquim Godinho, David Henriques, Pedro Melo-Pinto, Tiago Nunes, Fernando Piedade, Nelson Pimenta, Luis Sustelo, Armando M. Fernandes:
Classification of Fish Species Using Multispectral Data from a Low-Cost Camera and Machine Learning. Remote. Sens. 15(16): 3952 (2023) - 2017
- [j9]David Henriques, Alejandro Fernández Villaverde, Miguel Rocha, Julio Saez-Rodriguez, Julio R. Banga:
Data-driven reverse engineering of signaling pathways using ensembles of dynamic models. PLoS Comput. Biol. 13(2) (2017) - 2016
- [j8]Eva Balsa-Canto, David Henriques, Attila Gábor, Julio R. Banga:
AMIGO2, a toolbox for dynamic modeling, optimization and control in systems biology. Bioinform. 32(21): 3357-3359 (2016) - [j7]Irene Otero-Muras, David Henriques, Julio R. Banga:
SYNBADm: a tool for optimization-based automated design of synthetic gene circuits. Bioinform. 32(21): 3360-3362 (2016) - 2015
- [j6]David Henriques, Miguel Rocha, Julio Saez-Rodriguez, Julio R. Banga:
Reverse engineering of logic-based differential equation models using a mixed-integer dynamic optimization approach. Bioinform. 31(18): 2999-3007 (2015) - [j5]Alejandro Fernández Villaverde, David Henriques, Kieran Smallbone, Sophia Bongard, Joachim Schmid, Damjan Cicin-Sain, Anton Crombach, Julio Saez-Rodriguez, Klaus Mauch, Eva Balsa-Canto, Pedro Mendes, Johannes Jaeger, Julio R. Banga:
BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology. BMC Syst. Biol. 9: 8 (2015) - 2014
- [j4]Jose A. Egea, David Henriques, Thomas Cokelaer, Alejandro Fernández Villaverde, Aidan MacNamara, Diana-Patricia Danciu, Julio R. Banga, Julio Saez-Rodriguez:
MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics. BMC Bioinform. 15: 136 (2014) - [j3]Manuel Biscaia, David Henriques, Paulo Mateus:
Decidability of Approximate Skolem Problem and Applications to Logical Verification of Dynamical Properties of Markov Chains. ACM Trans. Comput. Log. 16(1): 4:1-4:17 (2014) - 2012
- [j2]Camille Terfve, Thomas Cokelaer, David Henriques, Aidan MacNamara, Emanuel J. V. Gonçalves, Melody K. Morris, Martijn P. van Iersel, Douglas A. Lauffenburger, Julio Saez-Rodriguez:
CellNOptR: a flexible toolkit to train protein signaling networks to data using multiple logic formalisms. BMC Syst. Biol. 6: 133 (2012) - [j1]David Henriques, Manuel Biscaia, Pedro Baltazar, Paulo Mateus:
Decidability and complexity for ω-regular properties of stochastic systems. Log. J. IGPL 20(6): 1175-1201 (2012)
Conference and Workshop Papers
- 2023
- [c4]Diego Troitiño-Jordedo, Lucas Carvalho, David Henriques, Vítor Pereira, Miguel Rocha, Eva Balsa-Canto:
A New GIMME-Based Heuristic for Compartmentalised Transcriptomics Data Integration. PACBB 2023: 44-52 - 2021
- [c3]Rosaria Rossini, Gianluca Prato, Davide Conzon, Claudio Pastrone, Eliseu Moura Pereira, João Reis, Gil Gonçalves, David Henriques, Ana Rita Santiago, Antonio J. M. Ferreira:
AI environment for predictive maintenance in a manufacturing scenario. ETFA 2021: 1-8 - 2012
- [c2]David Henriques, João G. Martins, Paolo Zuliani, André Platzer, Edmund M. Clarke:
Statistical Model Checking for Markov Decision Processes. QEST 2012: 84-93 - 2011
- [c1]H. Dominic Covvey, Donald D. Cowan, Paulo S. C. Alencar, William Malyk, Joel So, David Henriques, Shirley L. Fenton:
Model Human Behavior: Don't Constrain It! ITCH 2011: 188-195
Informal and Other Publications
- 2014
- [i2]Alejandro Fernández Villaverde, David Henriques, Kieran Smallbone, Sophia Bongard, Joachim Schmid, Damjan Cicin-Sain, Anton Crombach, Julio Saez-Rodriguez, Klaus Mauch, Eva Balsa-Canto, Pedro Mendes, Johannes Jaeger, Julio R. Banga:
BioPreDyn-bench: benchmark problems for kinetic modelling in systems biology. CoRR abs/1407.5856 (2014) - 2013
- [i1]Jose A. Egea, David Henriques, Thomas Cokelaer, Alejandro Fernández Villaverde, Julio R. Banga, Julio Saez-Rodriguez:
MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics. CoRR abs/1311.5735 (2013)
Coauthor Index
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