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ORCIDClemens Kreutz
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2020 – today
- 2023
[j20]Christian Tönsing
, Bernhard Steiert, Jens Timmer, Clemens Kreutz:
Likelihood-ratio test statistic for the finite-sample case in nonlinear ordinary differential equation models. PLoS Comput. Biol. 19(9) (2023)- [j19]Janine Egert, Clemens Kreutz:
Rcall: An R interface for MATLAB. SoftwareX 21: 101276 (2023) - [i4]Maren Hackenberg, Astrid Pechmann, Clemens Kreutz, Janbernd Kirschner, Harald Binder:
A statistical approach to latent dynamic modeling with differential equations. CoRR abs/2311.16286 (2023) - 2021
- [j18]Leonard Schmiester, Yannik Schälte, Frank T. Bergmann, Tacio Camba, Erika Dudkin, Janine Egert, Fabian Fröhlich, Lara Fuhrmann, Adrian L. Hauber, Svenja Kemmer, Polina A. Lakrisenko, Carolin Loos, Simon Merkt, Wolfgang Müller, Dilan Pathirana, Elba Raimúndez-Álvarez, Lukas Refisch, Marcus Rosenblatt, Paul Stapor, Philipp Städter, Dantong Wang, Franz-Georg Wieland, Julio R. Banga, Jens Timmer, Alejandro F. Villaverde, Sven Sahle, Clemens Kreutz, Jan Hasenauer, Daniel Weindl:
PEtab - Interoperable specification of parameter estimation problems in systems biology. PLoS Comput. Biol. 17(1) (2021) - [i3]Janine Egert, Clemens Kreutz:
Rcall: Calling R from Matlab. CoRR abs/2106.08143 (2021) - 2020
- [j17]Clemens Kreutz, Nilay S. Can, Ralf Schulze Bruening, Rabea Meyberg, Zsuzsanna Mérai, Noé Fernández-Pozo, Stefan A. Rensing:
A blind and independent benchmark study for detecting differentially methylated regions in plants. Bioinform. 36(11): 3314-3321 (2020) - [j16]Clemens Kreutz, Nilay S. Can, Ralf Schulze Bruening, Rabea Meyberg, Zsuzsanna Mérai, Noé Fernández-Pozo, Stefan A. Rensing:
A Blind and Independent Benchmark Study for Detecting Differentially Methylated Regions in Plants. Bioinform. 36(17): 4673 (2020) - [i2]Maren Hackenberg, Marlon Grodd, Clemens Kreutz, Martina Fischer, Janina Esins, Linus Grabenhenrich, Christian Karagiannidis, Harald Binder:
Using Differentiable Programming for Flexible Statistical Modeling. CoRR abs/2012.05722 (2020)
2010 – 2019
- 2019
- [j15]Helge Hass, Carolin Loos, Elba Raimúndez-Álvarez, Jens Timmer, Jan Hasenauer, Clemens Kreutz:
Benchmark problems for dynamic modeling of intracellular processes. Bioinform. 35(17): 3073-3082 (2019) - [i1]Clemens Kreutz:
Guidelines for benchmarking of optimization approaches for fitting mathematical models. CoRR abs/1907.03427 (2019) - 2018
- [j14]Clemens Kreutz:
An easy and efficient approach for testing identifiability. Bioinform. 34(11): 1913-1921 (2018) - 2016
- [j13]Helge Hass, Clemens Kreutz, Jens Timmer, Daniel Kaschek:
Fast integration-based prediction bands for ordinary differential equation models. Bioinform. 32(8): 1204-1210 (2016) - [j12]Bernhard Steiert, Jens Timmer, Clemens Kreutz:
L1 regularization facilitates detection of cell type-specific parameters in dynamical systems. Bioinform. 32(17): 718-726 (2016) - [j11]Ruth Merkle, Bernhard Steiert, Florian Salopiata, Sofia Depner, Andreas Raue, Nao Iwamoto, Max Schelker, Helge Hass, Marvin Wäsch, Martin E. Böhm, Oliver Mücke, Daniel B. Lipka, Christoph Plass, Wolf D. Lehmann, Clemens Kreutz, Jens Timmer, Marcel Schilling, Ursula Klingmüller:
Identification of Cell Type-Specific Differences in Erythropoietin Receptor Signaling in Primary Erythroid and Lung Cancer Cells. PLoS Comput. Biol. 12(8) (2016) - 2015
- [j10]Andreas Raue, Bernhard Steiert, Max Schelker, Clemens Kreutz, Tim Maiwald, Helge Hass, Joep Vanlier, Christian Tönsing, Lorenz Adlung, Raphael Engesser, Wolfgang Mader, Tim Heinemann, Jan Hasenauer, Marcel Schilling, Thomas Höfer, Edda Klipp, Fabian J. Theis, Ursula Klingmüller, Birgit Schoeberl, Jens Timmer:
Data2Dynamics: a modeling environment tailored to parameter estimation in dynamical systems. Bioinform. 31(21): 3558-3560 (2015) - [j9]Jonathan R. Karr, Alex H. Williams, Jeremy D. Zucker, Andreas Raue, Bernhard Steiert, Jens Timmer, Clemens Kreutz, Simon Wilkinson, Brandon A. Allgood, Brian M. Bot, Bruce R. Hoff, Michael R. Kellen, Markus W. Covert, Gustavo A. Stolovitzky, Pablo Meyer:
Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models. PLoS Comput. Biol. 11(5) (2015) - 2014
- [j8]Pablo Meyer, Thomas Cokelaer, Deepak Chandran, Kyung Hyuk Kim, Po-Ru Loh, George Tucker, Mark Lipson, Bonnie Berger, Clemens Kreutz, Andreas Raue, Bernhard Steiert, Jens Timmer, Erhan Bilal, Herbert M. Sauro, Gustavo Stolovitzky, Julio Saez-Rodriguez:
Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach. BMC Syst. Biol. 8: 13 (2014) - 2012
- [j7]Clemens Kreutz, J. S. Gehring, Daniel Lang, Ralf Reski, Jens Timmer, Stefan A. Rensing:
TSSi - an R package for transcription start site identification from 5′ mRNA tag data. Bioinform. 28(12): 1641-1642 (2012) - [j6]Max Schelker, Andreas Raue, Jens Timmer, Clemens Kreutz:
Comprehensive estimation of input signals and dynamics in biochemical reaction networks. Bioinform. 28(18): 529-534 (2012) - [j5]Clemens Kreutz, Andreas Raue, Jens Timmer:
Likelihood based observability analysis and confidence intervals for predictions of dynamic models. BMC Syst. Biol. 6: 120 (2012)
2000 – 2009
- 2009
- [j4]Andreas Raue, Clemens Kreutz, Thomas Maiwald, Julie Bachmann, Marcel Schilling, Ursula Klingmüller, Jens Timmer:
Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood. Bioinform. 25(15): 1923-1929 (2009) - [j3]Kilian Bartholomé, Clemens Kreutz, Jens Timmer:
Estimation of Gene Induction Enables a Relevance-Based Ranking of Gene Sets. J. Comput. Biol. 16(7): 959-967 (2009) - 2007
- [j2]Stefan Hengl, Clemens Kreutz, Jens Timmer, Thomas Maiwald:
Data-based identifiability analysis of non-linear dynamical models. Bioinform. 23(19): 2612-2618 (2007) - [j1]Clemens Kreutz, M. M. Bartolome Rodriguez, Thomas Maiwald, Maxmilian Seidl, H. E. Blum, L. Mohr, Jens Timmer:
An error model for protein quantification. Bioinform. 23(20): 2747-2753 (2007) - 2003
- [c1]Clemens Kreutz, Josef Honerkamp:
Controlling the Continuos Positive Airway Pressure-Device Using Partial Observable Markov Decision Processes. HPSC 2003: 273-286
Coauthor Index
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