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ORCIDJunguk Hur
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- affiliation: University of North Dakota, Grand Forks, ND, USA
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Journal Articles
- 2022
[j17]Anthony Huffman, Edison Ong, Junguk Hur
, Adonis D'mello, Hervé Tettelin, Yongqun He:
COVID-19 vaccine design using reverse and structural vaccinology, ontology-based literature mining and machine learning. Briefings Bioinform. 23(4) (2022)- [j16]Yongqun He, Hong Yu, Anthony Huffman, Asiyah Yu Lin, Darren A. Natale, John Beverley, Ling Zheng, Yehoshua Perl, Zhigang Wang, Yingtong Liu, Edison Ong, Yang Wang, Philip Huang, Long Tran, Jinyang Du, Zalan Shah, Easheta Shah, Roshan Desai, Hsin-Hui Huang, Yujia Tian, Eric Merrell, William D. Duncan, Sivaram Arabandi, Lynn M. Schriml, Jie Zheng, Anna Maria Masci, Liwei Wang, Hongfang Liu, Fatima Zohra Smaili, Robert Hoehndorf, Zoë May Pendlington, Paola Roncaglia, Xianwei Ye, Jiangan Xie, Yi-Wei Tang, Xiaolin Yang, Suyuan Peng, Luxia Zhang, Luonan Chen, Junguk Hur, Gilbert S. Omenn, Brian D. Athey, Barry Smith:
A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology. J. Biomed. Semant. 13(1): 25 (2022) - 2019
- [j15]Junguk Hur, Cui Tao, Yongqun He:
A 2018 workshop: vaccine and drug ontology studies (VDOS 2018). BMC Bioinform. 20-S(21): 705 (2019) - [j14]Mert Tiftikci, Arzucan Özgür, Yongqun He, Junguk Hur:
Machine learning-based identification and rule-based normalization of adverse drug reactions in drug labels. BMC Bioinform. 20-S(21): 707 (2019) - [j13]Guillermo de Anda-Jáuregui, Kai Guo, Brett A. McGregor, Eva L. Feldman, Junguk Hur:
Pathway crosstalk perturbation network modeling for identification of connectivity changes induced by diabetic neuropathy and pioglitazone. BMC Syst. Biol. 13(1): 1:1-1:11 (2019) - [j12]Guillermo de Anda-Jáuregui, Kai Guo, Brett A. McGregor, Eva L. Feldman, Junguk Hur:
Correction to: Pathway crosstalk perturbation network modeling for identification of connectivity changes induced by diabetic neuropathy and pioglitazone. BMC Syst. Biol. 13(1): 31:1 (2019) - [j11]Guillermo de Anda-Jáuregui, Jesús Espinal-Enríquez, Junguk Hur, Sergio Antonio Alcalá-Corona, Lena Ruiz-Azuara, Enrique Hernández-Lemus:
Identification of Casiopeina II-gly secondary targets through a systems pharmacology approach. Comput. Biol. Chem. 78: 127-132 (2019) - 2018
- [j10]Junguk Hur, Arzucan Özgür, Yongqun He:
Ontology-based literature mining and class effect analysis of adverse drug reactions associated with neuropathy-inducing drugs. J. Biomed. Semant. 9(1): 17:1-17:10 (2018) - 2017
- [j9]Junguk Hur, Arzucan Özgür, Yongqun He:
Ontology-based literature mining of E. coli vaccine-associated gene interaction networks. J. Biomed. Semant. 8(1): 12:1-12:10 (2017) - 2016
- [j8]Arzucan Özgür, Junguk Hur, Yongqun He:
The Interaction Network Ontology-supported modeling and mining of complex interactions represented with multiple keywords in biomedical literature. BioData Min. 9: 41:1-41:17 (2016) - [j7]Abra Guo, Rebecca Racz, Junguk Hur, Yu Lin, Zuoshuang Xiang, Lili Zhao, Jordan Rinder, Guoqian Jiang, Qian Zhu, Yongqun He:
Ontology-based collection, representation and analysis of drug-associated neuropathy adverse events. J. Biomed. Semant. 7: 29 (2016) - 2015
- [j6]Wallace K. B. Chan, Hongjiu Zhang, Jianyi Yang, Jeffrey R. Brender, Junguk Hur, Arzucan Özgür, Yang Zhang:
GLASS: a comprehensive database for experimentally validated GPCR-ligand associations. Bioinform. 31(18): 3035-3042 (2015) - [j5]Junguk Hur, Arzucan Özgür, Zuoshuang Xiang, Yongqun He:
Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions. J. Biomed. Semant. 6: 2 (2015) - 2014
- [j4]Yongqun He, Rebecca Racz, Samantha Sayers, Yu Lin, Thomas E. Todd, Junguk Hur, Xinna Li, Mukti Patel, Boyang Zhao, Monica Chung, Joseph Ostrow, Andrew Sylora, Priya Dungarani, Guerlain Ulysse, Kanika Kochhar, Boris Vidri, Kelsey Strait, George W. Jourdian, Zuoshuang Xiang:
Updates on the web-based VIOLIN vaccine database and analysis system. Nucleic Acids Res. 42(Database-Issue): 1124-1132 (2014) - 2012
- [j3]Junguk Hur, Arzucan Özgür, Zuoshuang Xiang, Yongqun He:
Identification of fever and vaccine-associated gene interaction networks using ontology-based literature mining. J. Biomed. Semant. 3: 18 (2012) - 2009
- [j2]Junguk Hur, Adam D. Schuyler, David J. States, Eva L. Feldman:
SciMiner: web-based literature mining tool for target identification and functional enrichment analysis. Bioinform. 25(6): 838-840 (2009) - 2004
- [j1]Sung Geun Lee, Junguk Hur, Yang Seok Kim:
A graph-theoretic modeling on GO space for biological interpretation of gene clusters. Bioinform. 20(3): 381-388 (2004)
Conference and Workshop Papers
- 2024
- [c5]Hasin Rehana, Benu Bansal, Nur Bengisu Çam, Jie Zheng, Yongqun He, Arzucan Özgür, Junguk Hur:
Nested Named Entity Recognition using Multilayer BERT-based Model. CLEF (Working Notes) 2024: 197-206 - 2021
- [c4]Temidayo Adeluwa, Eunjin Kim, Junguk Hur:
GBMPSO: Hybrid Gradient Boosting Machines with Particle Swarm Optimization in Cell Segmentation Data. SSCI 2021: 1-8 - 2020
- [c3]Yongqun He, Hong Yu, Edison Ong, Yang Wang, Yingtong Liu, Anthony Huffman, Hsin-Hui Huang, John Beverley, Asiyah Yu Lin, William D. Duncan, Sivaram Arabandi, Jiangan Xie, Junguk Hur, Xiaolin Yang, Luonan Chen, Gilbert S. Omenn, Brian D. Athey, Barry Smith:
CIDO: The Community-Based Coronavirus Infectious Disease Ontology. ICBO/ODLS 2020: 1-10 - 2016
- [c2]Arzucan Özgür, Junguk Hur, Zuoshuang Xiang, Edison Ong, Dragomir R. Radev, Yongqun He:
Ignet: A Centrality and INO-based Web System for Analyzing and Visualizing Literature-mined Networks. ICBO/BioCreative 2016 - 2015
- [c1]Arzucan Özgür, Junguk Hur, Yongqun He:
Extension of the Interaction Network Ontology for Literature Mining of Gene-gene Interaction Networks from Sentences with Multiple Interaction Keywords. BDM2I@ISWC 2015
Informal and Other Publications
- 2023
- [i2]Hasin Rehana, Nur Bengisu Çam, Mert Basmaci, Yongqun He, Arzucan Özgür, Junguk Hur:
Evaluation of GPT and BERT-based models on identifying protein-protein interactions in biomedical text. CoRR abs/2303.17728 (2023) - 2017
- [i1]Mert Tiftikci, Arzucan Özgür, Yongqun He, Junguk Hur:
Extracting Adverse Drug Reactions using Deep Learning and Dictionary Based Approaches. TAC 2017
Coauthor Index
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