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ORCIDJournal of Biomedical Semantics, Volume 9
Volume 9, Number 1, December 2018
- Daniela Oliveira
, Catia Pesquita:
Improving the interoperability of biomedical ontologies with compound alignments. 1:1-1:13 - John David Osborne, Matthew B. Neu, Maria I. Danila, Thamar Solorio, Steven J. Bethard:
CUILESS2016: a clinical corpus applying compositional normalization of text mentions. 2:1-2:9 - Yongqun He, Zuoshuang Xiang, Jie Zheng, Yu Lin, James A. Overton, Edison Ong:
The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability. 3:1-3:10 - Daniel Faria, Catia Pesquita, Isabela Mott, Catarina Martins, Francisco M. Couto, Isabel F. Cruz:
Tackling the challenges of matching biomedical ontologies. 4:1-4:19 - Viktor Senderov, Kiril Simov, Nico M. Franz, Pavel Stoev, Terry Catapano, Donat Agosti, Guido Sautter, Robert A. Morris, Lyubomir Penev:
OpenBiodiv-O: ontology of the OpenBiodiv knowledge management system. 5:1-5:15 - Nicolas Matentzoglu, James Malone, Chris Mungall, Robert Stevens:
MIRO: guidelines for minimum information for the reporting of an ontology. 6:1-6:13 - Nagesh Panyam Chandrasekarasastry, Karin Verspoor, Trevor Cohn, Kotagiri Ramamohanarao:
Exploiting graph kernels for high performance biomedical relation extraction. 7:1-7:11 - Shaker H. Ali El-Sappagh, Daehan Kwak, Farman Ali, Kyung Sup Kwak:
DMTO: a realistic ontology for standard diabetes mellitus treatment. 8:1-8:30 - Asan Agibetov, Ernesto Jiménez-Ruiz, Marta Ondresik, Alessandro Solimando, Imon Banerjee, Giovanna Guerrini, Chiara Eva Catalano, Joaquim Miguel Oliveira, Giuseppe Patanè, Rui Luís Reis, Michela Spagnuolo:
Supporting shared hypothesis testing in the biomedical domain. 9:1-9:22 - David Osumi-Sutherland, Enrico Ponta, Mélanie Courtot, Helen E. Parkinson, Laura Badi:
Using OWL reasoning to support the generation of novel gene sets for enrichment analysis. 10:1-10:10 - Mengyi Zhao, Songmao Zhang, Weizhuo Li, Guowei Chen:
Matching biomedical ontologies based on formal concept analysis. 11:1-11:27 - Aurélie Névéol, Hercules Dalianis, Sumithra Velupillai, Guergana Savova, Pierre Zweigenbaum:
Clinical Natural Language Processing in languages other than English: opportunities and challenges. 12:1-12:13 - Mercedes Argüello Casteleiro, George Demetriou, Warren J. Read, Maria Jesus Fernandez Prieto, Nava Maroto, Diego Maseda-Fernandez, Goran Nenadic, Julie Klein, John A. Keane, Robert Stevens:
Deep learning meets ontologies: experiments to anchor the cardiovascular disease ontology in the biomedical literature. 13:1-13:24 - Elena Solovieva, Toshihide Shikanai, Noriaki Fujita, Hisashi Narimatsu:
GGDonto ontology as a knowledge-base for genetic diseases and disorders of glycan metabolism and their causative genes. 14:1-14:14 - John Judkins, Jessica Tay-Sontheimer, Richard D. Boyce, Mathias Brochhausen:
Extending the DIDEO ontology to include entities from the natural product drug interaction domain of discourse. 15:1-15:9 - Stefan Kropf, Alexandr Uciteli, Katrin Schierle, Peter Krücken, Kerstin Denecke, Heinrich Herre:
Querying archetype-based EHRs by search ontology-based XPath engineering. 16:1-16:14 - Junguk Hur, Arzucan Özgür, Yongqun He:
Ontology-based literature mining and class effect analysis of adverse drug reactions associated with neuropathy-inducing drugs. 17:1-17:10 - Joana M. Barros, Jim Duggan, Dietrich Rebholz-Schuhmann:
Disease mentions in airport and hospital geolocations expose dominance of news events for disease concerns. 18:1-18:11 - Junxiang Wang, Liang Zhao, Yanfang Ye, Yuji Zhang:
Adverse event detection by integrating twitter data and VAERS. 19:1-19:10 - Ying Shen, Daoyuan Chen, Buzhou Tang, Min Yang, Kai Lei:
EAPB: entropy-aware path-based metric for ontology quality. 20:1-20:11 - Prodromos Kolyvakis, Alexandros Kalousis, Barry Smith, Dimitris Kiritsis:
Biomedical ontology alignment: an approach based on representation learning. 21:1-21:20 - Muhammad Amith, Cui Tao:
Representing vaccine misinformation using ontologies. 22:1-22:13 - Wytze J. Vlietstra, Rein Vos, Anneke M. Sijbers, Erik M. van Mulligen, Jan A. Kors:
Using predicate and provenance information from a knowledge graph for drug efficacy screening. 23:1-23:10 - Alejandro Metke-Jimenez, Jim Steel, David P. Hansen, Michael Lawley:
Ontoserver: a syndicated terminology server. 24:1-24:10 - Thomas C. Rindflesch, Catherine Blake, Michael J. Cairelli, Marcelo Fiszman, Caroline J. Zeiss, Halil Kilicoglu:
Investigating the role of interleukin-1 beta and glutamate in inflammatory bowel disease and epilepsy using discovery browsing. 25:1-25:14
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