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ORCIDBarbora Kozlíková
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- affiliation: Masaryk University, Brno, Czechia
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2020 – today
- 2025
[j41]Matej Lang
, Adam J. Stepanek, Róbert Zvara, Vojtech Rehák, Barbora Kozlíková:
Who Let the Guards Out: Visual Support for Patrolling Games. IEEE Trans. Vis. Comput. Graph. 31(1): 34-43 (2025)- [j40]Hana Pokojná, Tobias Isenberg, Stefan Bruckner, Barbora Kozlíková, Laura A. Garrison:
The Language of Infographics: Toward Understanding Conceptual Metaphor Use in Scientific Storytelling. IEEE Trans. Vis. Comput. Graph. 31(1): 371-381 (2025) - [j39]Filip Opálený, Pavol Ulbrich, Joan Planas-Iglesias, Jan Byska, Jan Stourac, David Bednár, Katarína Furmanová, Barbora Kozlíková:
Visual Support for the Loop Grafting Workflow on Proteins. IEEE Trans. Vis. Comput. Graph. 31(1): 580-590 (2025) - 2024
- [j38]Hana Pokojná, Barbora Kozlíková, Katarína Furmanová, Simone Kriglstein:
ProjectAnatomy : a handy tool for learning forearm anatomy with augmented physicalisations. Behav. Inf. Technol. 43(14): 3389-3406 (2024) - [j37]David Kuták, Danielle Langlois, Roman Rozic, Jan Byska, Haichao Miao, Simone Kriglstein, Barbora Kozlíková:
Design and evaluation of alphabetic and numeric input methods for virtual reality. Comput. Graph. 122: 103955 (2024) - [j36]Elena Molina, David Kouril, Tobias Isenberg, Barbora Kozlíková, Pere-Pau Vázquez:
Virtual reality inspection of chromatin 3D and 2D data. Comput. Graph. 124: 104059 (2024) - [j35]Matej Lang, Radoslav Mráz, Marek Trtík, Sergej Stoppel, Jan Byska, Barbora Kozlíková:
Antarstick: Extracting Snow Height From Time-Lapse Photography. Comput. Graph. Forum 43(3) (2024) - [j34]Marco Schäfer, Nicolas Brich, Jan Byska, Sérgio M. Marques, David Bednár, Philipp Thiel, Barbora Kozlíková, Michael Krone:
InVADo: Interactive Visual Analysis of Molecular Docking Data. IEEE Trans. Vis. Comput. Graph. 30(4): 1984-1997 (2024) - [i12]Hana Pokojná, Tobias Isenberg, Stefan Bruckner, Barbora Kozlíková, Laura A. Garrison:
The Language of Infographics: Toward Understanding Conceptual Metaphor Use in Scientific Storytelling. CoRR abs/2407.13416 (2024) - [i11]Matej Lang, Adam J. Stepanek, Róbert Zvara, Vojtech Rehák, Barbora Kozlíková:
Who Let the Guards Out: Visual Support for Patrolling Games. CoRR abs/2407.18705 (2024) - [i10]Filip Opálený, Pavol Ulbrich, Joan Planas-Iglesias, Jan Byska, Jan Stourac, David Bednár, Katarína Furmanová, Barbora Kozlíková:
Visual Support for the Loop Grafting Workflow on Proteins. CoRR abs/2407.20054 (2024) - [i9]Adam J. Stepanek, David Kuták, Barbora Kozlíková, Jan Byska:
Interactive Diagrams for Software Documentation. CoRR abs/2407.21621 (2024) - 2023
- [j33]Matej Lang, Clemens Strobel, Felix Weckesser, Danielle Langlois, Enkelejda Kasneci, Barbora Kozlíková, Michael Krone:
A multimodal smartwatch-based interaction concept for immersive environments. Comput. Graph. 117: 85-95 (2023) - [j32]Jirí Horák, Katarína Furmanová, Barbora Kozlíková, Tomás Brázdil, Petr Holub, M. Kacenga, Matej Gallo, R. Nenutil, Jan Byska, Vít Rusnák:
xOpat: eXplainable Open Pathology Analysis Tool. Comput. Graph. Forum 42(3): 63-73 (2023) - [j31]David Kuták, Pere-Pau Vázquez, Tobias Isenberg, Michael Krone, Marc Baaden, Jan Byska, Barbora Kozlíková, Haichao Miao:
State of the Art of Molecular Visualization in Immersive Virtual Environments. Comput. Graph. Forum 42(6) (2023) - [j30]Pavol Ulbrich, Manuela Waldner, Katarína Furmanová, Sérgio M. Marques, David Bednár, Barbora Kozlíková, Jan Byska:
sMolBoxes: Dataflow Model for Molecular Dynamics Exploration. IEEE Trans. Vis. Comput. Graph. 29(1): 581-590 (2023) - [i8]Katja Bühler, Barbora Kozlíková, Michael Krone, Cagatay Turkay, Ramasamy Pathmanaban:
Visualization of Biomedical Data - Shaping the Future and Building Bridges (Dagstuhl Seminar 23451). Dagstuhl Reports 13(11): 1-19 (2023) - 2022
- [j29]Joan Planas-Iglesias, Filip Opálený, Pavol Ulbrich, Jan Stourac, Zainab K. Sanusi, Gaspar R. P. Pinto, Andrea Schenkmayerova, Jan Byska, Jirí Damborský, Barbora Kozlíková, David Bednar:
LoopGrafter: a web tool for transplanting dynamical loops for protein engineering. Nucleic Acids Res. 50(W1): 465-473 (2022) - [j28]David Kuták, Matias Nicolás Selzer, Jan Byska, Maria Luján Ganuza, Ivan Barisic, Barbora Kozlíková, Haichao Miao:
Vivern-A Virtual Environment for Multiscale Visualization and Modeling of DNA Nanostructures. IEEE Trans. Vis. Comput. Graph. 28(12): 4825-4838 (2022) - [i7]Pavol Ulbrich, Manuela Waldner, Katarína Furmanová, Sérgio M. Marques, David Bednár, Barbora Kozlíková, Jan Byska:
sMolBoxes: Dataflow Model for Molecular Dynamics Exploration. CoRR abs/2209.11771 (2022) - [i6]Matús Talcík, Filip Opálený, Tereza Clarence, Katarína Furmanová, Jan Byska, Barbora Kozlíková, David Kouril:
ChromoSkein: Untangling Three-Dimensional Chromatin Fiber With a Web-Based Visualization Framework. CoRR abs/2211.05125 (2022) - 2021
- [j27]Vojtech Bruza, Jan Byska, Jan Mican, Barbora Kozlíková:
VRdeo: Creating engaging educational material for asynchronous student-teacher exchange using virtual reality. Comput. Graph. 98: 280-292 (2021) - [j26]Barbora Kozlíková, Michael Krone, Kay Nieselt, Renata G. Raidou, Noeska N. Smit:
Foreword: Special section on the Eurographics Workshop on Visual Computing for Biology and Medicine (EG VCBM) 2020. Comput. Graph. 101: 5-6 (2021) - [j25]Kristína Zákopcanová, Marko Rehácek, Jozef Bátrna, Daniel Plakinger, Sergej Stoppel, Barbora Kozlíková:
Visilant: Visual Support for the Exploration and Analytical Process Tracking in Criminal Investigations. IEEE Trans. Vis. Comput. Graph. 27(2): 881-890 (2021) - [j24]María Virginia Sabando, Pavol Ulbrich, Matias Nicolás Selzer, Jan Byska, Jan Mican, Ignacio Ponzoni, Axel J. Soto, Maria Luján Ganuza, Barbora Kozlíková:
ChemVA: Interactive Visual Analysis of Chemical Compound Similarity in Virtual Screening. IEEE Trans. Vis. Comput. Graph. 27(2): 891-901 (2021) - [j23]David Kouril, Tobias Isenberg, Barbora Kozlíková, Miriah Meyer, M. Eduard Gröller, Ivan Viola:
HyperLabels: Browsing of Dense and Hierarchical Molecular 3D Models. IEEE Trans. Vis. Comput. Graph. 27(8): 3493-3504 (2021) - [c21]Pedro Hermosilla, Marco Schäfer, Matej Lang, Gloria Fackelmann, Pere-Pau Vázquez, Barbora Kozlíková, Michael Krone, Tobias Ritschel, Timo Ropinski:
Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures. ICLR 2021 - 2020
- [j22]Guido Reina, Hank Childs, Kresimir Matkovic, Katja Bühler, Manuela Waldner, David Pugmire, Barbora Kozlíková, Timo Ropinski, Patric Ljung, Takayuki Itoh, M. Eduard Gröller, Michael Krone:
The moving target of visualization software for an increasingly complex world. Comput. Graph. 87: 12-29 (2020) - [j21]Barbora Kozlíková, Bernhard Preim, Katja Bühler, Renata G. Raidou:
Foreword: Special Section on the Eurographics Workshop on Visual Computing for Biology and Medicine (EG VCBM) 2019. Comput. Graph. 92: 4- (2020) - [j20]Katarína Furmanová, Ondrej Vávra, Barbora Kozlíková, Jirí Damborský, Vojtech Vonásek, David Bednar, Jan Byska:
DockVis: Visual Analysis of Molecular Docking Trajectories. Comput. Graph. Forum 39(6): 452-464 (2020) - [j19]Vojtech Vonásek, Robert Penicka, Barbora Kozlíková:
Searching Multiple Approximate Solutions in Configuration Space to Guide Sampling-Based Motion Planning. J. Intell. Robotic Syst. 100(3): 1527-1543 (2020) - [j18]Katarína Furmanová, Adam Jurcík, Barbora Kozlíková, Helwig Hauser, Jan Byska:
Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes. IEEE Trans. Vis. Comput. Graph. 26(1): 843-852 (2020) - [c20]Zoltán Orémus, Kahin Akram Hassan, Jirí Chmelík, Michaela Knazková, Jan Byska, Renata Georgia Raidou, Barbora Kozlíková:
PINGU Principles of Interactive Navigation for Geospatial Understanding. PacificVis 2020: 216-225 - [p2]Johanna Beyer, Charles D. Hansen, Mario Hlawitschka, Ingrid Hotz, Barbora Kozlíková, Gerik Scheuermann, Markus Stommel, Marc Streit, Johannes Waschke, Thomas Wischgoll, Yong Wan:
Case Studies for Working with Domain Experts. Foundations of Data Visualization 2020: 255-278 - [p1]Jan Byska, Adam Jurcík, Katarína Furmanová, Barbora Kozlíková, Jan J. Palecek:
Visual Analysis of Protein-Protein Interaction Docking Models Using COZOID Tool. Protein-Protein Interaction Networks 2020: 81-94 - [e4]Barbora Kozlíková, Michael Krone, Noeska N. Smit, Kay Nieselt, Renata Georgia Raidou:
10th Eurographics Workshop on Visual Computing for Biology and Medicine, VCBM 2020, Tübingen, Germany, September 28 - October 1, 2020. Eurographics Association 2020, ISBN 978-3-03868-109-0 [contents] - [i5]Pedro Hermosilla, Marco Schäfer, Matej Lang, Gloria Fackelmann, Pere-Pau Vázquez, Barbora Kozlíková, Michael Krone, Tobias Ritschel, Timo Ropinski:
ProteiNN: Intrinsic-Extrinsic Convolution and Pooling for Scalable Deep Protein Analysis. CoRR abs/2007.06252 (2020) - [i4]María Virginia Sabando, Pavol Ulbrich, Matias Nicolás Selzer, Jan Byska, Jan Mican, Ignacio Ponzoni, Axel J. Soto, Maria Luján Ganuza, Barbora Kozlíková:
ChemVA: Interactive Visual Analysis of Chemical Compound Similarity in Virtual Screening. CoRR abs/2008.13150 (2020) - [i3]Kristína Zákopcanová, Marko Rehácek, Jozef Bátrna, Daniel Plakinger, Sergej Stoppel, Barbora Kozlíková:
Visilant: Visual Support for the Exploration and Analytical Process Tracking in Criminal Investigations. CoRR abs/2009.09082 (2020) - [i2]Renata Georgia Raidou, Barbora Kozlíková, Johanna Beyer, Timo Ropinski, Issei Fujishiro:
Formalizing Biological and Medical Visualization (NII Shonan Meeting 167). NII Shonan Meet. Rep. 2020 (2020)
2010 – 2019
- 2019
- [j17]Jan Byska, Thomas Trautner, Sérgio M. Marques, Jirí Damborský, Barbora Kozlíková, Manuela Waldner:
Analysis of Long Molecular Dynamics Simulations Using Interactive Focus+Context Visualization. Comput. Graph. Forum 38(3): 441-453 (2019) - [j16]Vojtech Vonásek, Adam Jurcík, Katarína Furmanová, Barbora Kozlíková:
Sampling-Based Motion Planning for Tracking Evolution of Dynamic Tunnels in Molecular Dynamics Simulations. J. Intell. Robotic Syst. 93(3-4): 763-785 (2019) - [j15]David Kouril, Ladislav Cmolík, Barbora Kozlíková, Hsiang-Yun Wu, Graham Johnson, David S. Goodsell, Arthur J. Olson, M. Eduard Gröller, Ivan Viola:
Labels on Levels: Labeling of Multi-Scale Multi-Instance and Crowded 3D Biological Environments. IEEE Trans. Vis. Comput. Graph. 25(1): 977-986 (2019) - [j14]David Duran, Pedro Hermosilla, Timo Ropinski, Barbora Kozlíková, Àlvar Vinacua, Pere-Pau Vázquez:
Visualization of Large Molecular Trajectories. IEEE Trans. Vis. Comput. Graph. 25(1): 987-996 (2019) - [c19]Adam Jurcík, Katarína Furmanová, Jan Byska, Vojtech Vonásek, Ondrej Vávra, Pavol Ulbrich, Helwig Hauser, Barbora Kozlíková:
Visual Analysis of Ligand Trajectories in Molecular Dynamics. PacificVis 2019: 212-221 - [c18]Vojtech Vonásek, Robert Penicka, Barbora Kozlíková:
Computing multiple guiding paths for sampling-based motion planning. ICAR 2019: 374-381 - [c17]Katarína Furmanová, Barbora Kozlíková, Vojtech Vonásek, Jan Byska:
DockVis: Visual Analysis of Molecular Docking Data. VCBM 2019: 113-122 - [c16]Pavol Ulbrich, Michal Hornák, Barbora Kozlíková:
LOOPS: Visual Analysis Tool for Non-Periodic Protein Structures. EuroVis (Posters) 2019: 93-95 - [e3]Barbora Kozlíková, Renata Georgia Raidou:
Eurographics Workshop on Visual Computing for Biology and Medicine, VCBM 2019, Brno, Czech Republic, September 4-6, 2019. Eurographics Association 2019, ISBN 978-3-03868-081-9 [contents] - [i1]Katarína Furmanová, Adam Jurcík, Barbora Kozlíková, Helwig Hauser, Jan Byska:
Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes. CoRR abs/1907.04112 (2019) - 2018
- [j13]Adam Jurcík, David Bednar, Jan Byska, Sérgio M. Marques, Katarína Furmanová, Lukas Daniel, Piia Kokkonen, Jan Brezovsky, Ondrej Strnad, Jan Stourac, Antonín Pavelka, Martin Manak, Jirí Damborský, Barbora Kozlíková:
CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories. Bioinform. 34(20): 3586-3588 (2018) - [j12]Katarína Furmanová, Jan Byska, M. Eduard Gröller, Ivan Viola, Jan J. Palecek, Barbora Kozlíková:
COZOID: contact zone identifier for visual analysis of protein-protein interactions. BMC Bioinform. 19(1): 125:1-125:17 (2018) - [j11]Tobias Klein, Ludovic Autin, Barbora Kozlíková, David S. Goodsell, Arthur J. Olson, M. Eduard Gröller, Ivan Viola:
Instant Construction and Visualization of Crowded Biological Environments. IEEE Trans. Vis. Comput. Graph. 24(1): 862-872 (2018) - [e2]Anna Puig, Thomas Schultz, Anna Vilanova, Ingrid Hotz, Barbora Kozlíková, Pere-Pau Vázquez:
8th Eurographics Workshop on Visual Computing for Biology and Medicine, VCBM@MICCAI 2018, Granada, Spain, September 20-21, 2018. Eurographics Association 2018, ISBN 978-3-03868-056-7 [contents] - 2017
- [j10]Katarína Furmanová, Miroslava Jaresová, Jan Byska, Adam Jurcík, Július Parulek, Helwig Hauser, Barbora Kozlíková:
Interactive exploration of ligand transportation through protein tunnels. BMC Bioinform. 18(S-2): 22:1-22:16 (2017) - [j9]Lucia Kocincová, Miroslava Jaresová, Jan Byska, Július Parulek, Helwig Hauser, Barbora Kozlíková:
Comparative visualization of protein secondary structures. BMC Bioinform. 18(S-2): 23:1-23:12 (2017) - [j8]Barbora Kozlíková, Michael Krone, Martin Falk, Norbert Lindow, Marc Baaden, Daniel Baum, Ivan Viola, Július Parulek, Hans-Christian Hege:
Visualization of Biomolecular Structures: State of the Art Revisited. Comput. Graph. Forum 36(8): 178-204 (2017) - [j7]Igor Chalas, Petra Urbanova, Vojtech Jurík, Zuzana Ferkova, Marie Jandová, Jirí Sochor, Barbora Kozlíková:
Generating various composite human faces from real 3D facial images. Vis. Comput. 33(4): 443-458 (2017) - [c15]Vojtech Vonásek, Barbora Kozlíková:
Tunnel detection in protein structures using sampling-based motion planning. RoMoCo 2017: 185-192 - [c14]Katarína Furmanová, Petra Urbanová, Barbora Kozlíková:
AnthroVis: visual analysis of 3D mesh ensembles for forensic anthropology. SCCG 2017: 17:1-17:9 - [c13]Jan Malzahn, Barbora Kozlíková, Timo Ropinski:
Protein Tunnel Reprojection for Physico-Chemical Property Analysis. VCBM 2017: 1-10 - [c12]Viktor Vad, Jan Byska, Adam Jurcík, Ivan Viola, M. Eduard Gröller, Helwig Hauser, Sérgio M. Marques, Jirí Damborský, Barbora Kozlíková:
Watergate: Visual Exploration of Water Trajectories in Protein Dynamics. VCBM 2017: 33-42 - [e1]Barbora Kozlíková, Tobias Schreck, Thomas Wischgoll:
19th Eurographics Conference on Visualization, EuroVis 2017 - Short Papers, Barcelona, Spain, June 12-16, 2017. Eurographics Association 2017, ISBN 978-3-03868-043-7 [contents] - 2016
- [j6]Michael Krone, Barbora Kozlíková, Norbert Lindow, Marc Baaden, Daniel Baum, Július Parulek, Hans-Christian Hege, Ivan Viola:
Visual Analysis of Biomolecular Cavities: State of the Art. Comput. Graph. Forum 35(3): 527-551 (2016) - [j5]Antonín Pavelka, Eva Sebestova, Barbora Kozlíková, Jan Brezovsky, Jirí Sochor, Jirí Damborský:
CAVER: Algorithms for Analyzing Dynamics of Tunnels in Macromolecules. IEEE ACM Trans. Comput. Biol. Bioinform. 13(3): 505-517 (2016) - [j4]Jan Byska, Mathieu Le Muzic, M. Eduard Gröller, Ivan Viola, Barbora Kozlíková:
AnimoAminoMiner: Exploration of Protein Tunnels and their Properties in Molecular Dynamics. IEEE Trans. Vis. Comput. Graph. 22(1): 747-756 (2016) - [c11]Adam Jurcík, Július Parulek, Jirí Sochor, Barbora Kozlíková:
Accelerated visualization of transparent molecular surfaces in molecular dynamics. PacificVis 2016: 112-119 - [c10]Vojtech Vonásek, Barbora Kozlíková:
Application of sampling-based path planning for tunnel detection in dynamic protein structures. MMAR 2016: 1010-1015 - [c9]Ivan Kolesár, Jan Byska, Július Parulek, Helwig Hauser, Barbora Kozlíková:
Unfolding and Interactive Exploration of Protein Tunnels and their Dynamics. VCBM/MedViz 2016: 1-10 - 2015
- [j3]Jan Byska, Adam Jurcík, M. Eduard Gröller, Ivan Viola, Barbora Kozlíková:
MoleCollar and Tunnel Heat Map Visualizations for Conveying Spatio-Temporo-Chemical Properties Across and Along Protein Voids. Comput. Graph. Forum 34(3): 1-10 (2015) - [c8]Adam Jurcík, Jan Byska, Jirí Sochor, Barbora Kozlíková:
Visibility-based approach to surface detection of tunnels in proteins. SCCG 2015: 65-72 - [c7]Jan Byska, Ivana Kolingerová, Barbora Kozlíková, Jirí Sochor:
Path-planning algorithm for transportation of molecules through protein tunnel bottlenecks. SCCG 2015: 81-88 - [c6]Barbora Kozlíková, Michael Krone, Norbert Lindow, Martin Falk, Marc Baaden, Daniel Baum, Ivan Viola, Július Parulek, Hans-Christian Hege:
Visualization of Biomolecular Structures: State of the Art. EuroVis (STARs) 2015: 61-81 - [c5]Igor Chalas, Zuzana Ferkova, Katarína Furmanová, Jiri Sochor, Barbora Kozlíková:
Generation of Variable Human Faces from 3D Scan Dataset. VS-GAMES 2015: 1-8 - 2014
- [j2]Barbora Kozlíková, Eva Sebestova, Vilém Sustr, Jan Brezovsky, Ondrej Strnad, Lukas Daniel, David Bednar, Antonín Pavelka, Martin Manak, Martin Bezdeka, Petr Benes, Matus Kotry, Artur Góra, Jirí Damborský, Jiri Sochor:
CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures. Bioinform. 30(18): 2684-2685 (2014) - [c4]Ondrej Strnad, Barbora Kozlíková, Jiri Sochor:
Detection of Intramolecular Tunnels Connecting Sequence of Sites in Protein Structures. PACBB 2014: 73-80 - [c3]Barbora Kozlíková, Adam Jurcík, Jan Byska, Ondrej Strnad, Jiri Sochor:
Visualizing Movements of Protein Tunnels in Molecular Dynamics Simulations. VCBM 2014: 97-106 - 2012
- [j1]Eva Chovancová, Antonín Pavelka, Petr Benes, Ondrej Strnad, Jan Brezovsky, Barbora Kozlíková, Artur Góra, Vilém Sustr, Martin Klvana, Petr Medek, Lada Biedermannová, Jiri Sochor, Jirí Damborský:
CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures. PLoS Comput. Biol. 8(10) (2012) - 2010
- [c2]Barbora Kozlíková, Jirí Sochor:
CAVER Viewer - the explorer of behaviour of tunnels in proteins. Eurographics (Posters) 2010
2000 – 2009
- 2007
- [c1]Barbora Kozlíková, Filip Andres, Jiri Sochor:
Visualization of tunnels in protein molecules. Afrigraph 2007: 111-118
Coauthor Index
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