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Protein-Protein Interaction Networks, 2020
- Stefan Canzar, Francisca Rojas Ringeling:
Protein-Protein Interaction Networks, Methods and Protocols. Methods in Molecular Biology 2074, Springer 2020, ISBN 978-1-4939-9872-2 - Yiwei Li, Lucian Ilie:
Predicting Protein-Protein Interactions Using SPRINT. 1-11 - Kalpana Raja, Jeyakumar Natarajan, Finn Kuusisto, John W. Steill, Ian Ross, James A. Thomson, Ron M. Stewart:
Automated Extraction and Visualization of Protein-Protein Interaction Networks and Beyond: A Text-Mining Protocol. 13-34 - Jung Eun Shim, Insuk Lee:
Construction of Functional Protein Networks Using Domain Profile Associations. 35-44 - Ina Koch, Oliver Philipp, Andrea Hamann, Heinz D. Osiewacz:
Reconstruction of Protein-Protein Interaction Networks Using Homology-Based Search: Application to the Autophagy Pathway of Aging in Podospora anserina. 45-55 - Thomas Gueudré, Carlo Baldassi, Andrea Pagnani, Martin Weigt:
Predicting Interacting Protein Pairs by Coevolutionary Paralog Matching. 57-65 - Xiaoyang Jing, Hong Zeng, Sheng Wang, Jinbo Xu:
A Web-Based Protocol for Interprotein Contact Prediction by Deep Learning. 67-80 - Jan Byska, Adam Jurcík, Katarína Furmanová, Barbora Kozlíková, Jan J. Palecek:
Visual Analysis of Protein-Protein Interaction Docking Models Using COZOID Tool. 81-94 - Genki Terashi, Charles Christoffer, Daisuke Kihara:
Path-LZerD: Predicting Assembly Order of Multimeric Protein Complexes. 95-112 - Farideh Halakou, Attila Gürsoy, Ozlem Keskin:
Embedding Alternative Conformations of Proteins in Protein-Protein Interaction Networks. 113-124 - Chiara Pastrello, Max Kotlyar, Igor Jurisica:
Informed Use of Protein-Protein Interaction Data: A Focus on the Integrated Interactions Database (IID). 125-134 - Gregorio Alanis-Lobato, Martin H. Schaefer:
Generation and Interpretation of Context-Specific Human Protein-Protein Interaction Networks with HIPPIE. 135-144 - Andrey A. Ivanov:
Explore Protein-Protein Interactions for Cancer Target Discovery Using the OncoPPi Portal. 145-164 - Robin Haw, Fred Loney, Edison Ong, Yongqun He, Guanming Wu:
Perform Pathway Enrichment Analysis Using ReactomeFIViz. 165-179 - Nicolas Alcaraz, Anne Hartebrodt, Markus List:
De Novo Pathway Enrichment with KeyPathwayMiner. 181-199 - Markus List, Nicolas Alcaraz, Richa Batra:
De Novo Pathway-Based Classification of Breast Cancer Subtypes. 201-213 - Sonja Biedermann, Monika Henzinger, Christian Schulz, Bernhard Schuster:
Vienna Graph Clustering. 215-231 - Angela Re, Paola Lecca:
On TD-WGcluster: Theoretical Foundations and Guidelines for the User. 233-262 - Wayne B. Hayes:
An Introductory Guide to Aligning Networks Using SANA, the Simulated Annealing Network Aligner. 263-284
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