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Journal Articles
- 2024
[j19]Tingjun Xu
, Wenxing Gao, Lixin Zhu, Wanning Chen, Chaoqun Niu, Wenjing Yin, Liangxiao Ma, Xinyue Zhu, Yunchao Ling, Sheng Gao, Lei Liu, Na Jiao, Weiming Chen, Guoqing Zhang, Ruixin Zhu, Dingfeng Wu:
NAFLDkb: A Knowledge Base and Platform for Drug Development against Nonalcoholic Fatty Liver Disease. J. Chem. Inf. Model. 64(7): 2817-2828 (2024)- 2021
- [j18]Dingfeng Wu, Wenxing Gao, Xiaoyi Li, Chuan Tian, Na Jiao, Sa Fang, Jing Xiao, Zhifeng Xu, Lixin Zhu, Guoqing Zhang, Ruixin Zhu:
Dr AFC: drug repositioning through anti-fibrosis characteristic. Briefings Bioinform. 22(3) (2021) - 2017
- [j17]Tianyi Qiu, Jingxuan Qiu, Jun Feng, Dingfeng Wu, Yiyan Yang, Kailin Tang, Zhiwei Cao, Ruixin Zhu:
The recent progress in proteochemometric modelling: focusing on target descriptors, cross-term descriptors and application scope. Briefings Bioinform. 18(1): 125-136 (2017) - 2016
- [j16]Jun Gao, Qingchen Zhang, Min Liu, Lixin Zhu, Dingfeng Wu, Zhiwei Cao, Ruixin Zhu:
bSiteFinder, an improved protein-binding sites prediction server based on structural alignment: more accurate and less time-consuming. J. Cheminformatics 8(1): 38:1-38:10 (2016) - [j15]Lei Liu, Maria Tsompana, Yong Wang, Dingfeng Wu, Lixin Zhu, Ruixin Zhu:
Connection Map for Compounds (CMC): A Server for Combinatorial Drug Toxicity and Efficacy Analysis. J. Chem. Inf. Model. 56(9): 1615-1621 (2016) - 2015
- [j14]Wei Zhang, Lijuan Ji, Yanan Chen, Kailin Tang, Haiping Wang, Ruixin Zhu, Wei Jia, Zhiwei Cao, Qi Liu:
When drug discovery meets web search: Learning to Rank for ligand-based virtual screening. J. Cheminformatics 7: 5 (2015) - 2014
- [j13]Qi Liu, Han Zhou, Ruixin Zhu, Ying Xu, Zhiwei Cao:
Reconsideration of in silico siRNA design from a perspective of heterogeneous data integration: problems and solutions. Briefings Bioinform. 15(2): 292-305 (2014) - [j12]Haoqi Sun, Haiping Wang, Ruixin Zhu, Kailin Tang, Qin Gong, Juan Cui, Zhiwei Cao, Qi Liu:
iPEAP: integrating multiple omics and genetic data for pathway enrichment analysis. Bioinform. 30(5): 737-739 (2014) - [j11]Tao Qi, Tianyi Qiu, Qingchen Zhang, Kailin Tang, Yangyang Fan, Jingxuan Qiu, Dingfeng Wu, Wei Zhang, Yanan Chen, Jun Gao, Ruixin Zhu, Zhiwei Cao:
SEPPA 2.0 - more refined server to predict spatial epitope considering species of immune host and subcellular localization of protein antigen. Nucleic Acids Res. 42(Webserver-Issue): 59-63 (2014) - 2013
- [j10]Yi Sun, Ruixin Zhu, Hao Ye, Kailin Tang, Jing Zhao, Yujia Chen, Qi Liu, Zhiwei Cao:
Towards a bioinformatics analysis of anti-Alzheimer's herbal medicines from a target network perspective. Briefings Bioinform. 14(3): 327-343 (2013) - [j9]Hong Kang, Kailin Tang, Qi Liu, Yi Sun, Qi Huang, Ruixin Zhu, Jun Gao, Duanfeng Zhang, Chenggang Huang, Zhiwei Cao:
HIM-herbal ingredients in-vivo metabolism database. J. Cheminformatics 5: 28 (2013) - 2012
- [j8]Tianlei Xu, Ruixin Zhu, Qi Liu, Zhi-Wei Cao:
Quantitatively integrating molecular structure and bioactivity profile evidence into drug-target relationship analysis. BMC Bioinform. 13: 75 (2012) - [j7]Jun Gao, Dongsheng Che, Vincent Wenchen Zheng, Ruixin Zhu, Qi Liu:
Integrated QSAR study for inhibitors of hedgehog signal pathway against multiple cell lines: a collaborative filtering method. BMC Bioinform. 13: 186 (2012) - [j6]Dingfeng Wu, Qi Huang, Yida Zhang, Qingchen Zhang, Qi Liu, Jun Gao, Zhi-Wei Cao, Ruixin Zhu:
Screening of selective histone deacetylase inhibitors by proteochemometric modeling. BMC Bioinform. 13: 212 (2012) - [j5]Hong Kang, Zhen Sheng, Ruixin Zhu, Qi Huang, Qi Liu, Zhiwei Cao:
Virtual Drug Screen Schema Based on Multiview Similarity Integration and Ranking Aggregation. J. Chem. Inf. Model. 52(3): 834-843 (2012) - 2011
- [j4]Kailin Tang, Ruixin Zhu, Yixue Li, Zhi-Wei Cao:
Discrimination of Approved Drugs from Experimental Drugs by Learning Methods. BMC Bioinform. 12: 157 (2011) - [j3]Qi Liu, Han Zhou, Lin Liu, Xi Chen, Ruixin Zhu, Zhi-Wei Cao:
Multi-target QSAR Modelling in the Analysis and Design of HIV-HCV Co-Inhibitors : An In-silico Study. BMC Bioinform. 12: 294 (2011) - [j2]Tianli Dai, Qi Liu, Jun Gao, Zhiwei Cao, Ruixin Zhu:
A new protein-ligand binding sites prediction method based on the integration of protein sequence conservation information. BMC Bioinform. 12(S-14): S9 (2011) - [j1]Hao Ye, Li Ye, Hong Kang, Duanfeng Zhang, Lin Tao, Kailin Tang, Xueping Liu, Ruixin Zhu, Qi Liu, Yuzong Chen, Yixue Li, Zhi-Wei Cao:
HIT: linking herbal active ingredients to targets. Nucleic Acids Res. 39(Database-Issue): 1055-1059 (2011)
Conference and Workshop Papers
- 2010
- [c1]Xiaoxiao Shi, Qi Liu, Wei Fan, Philip S. Yu, Ruixin Zhu:
Transfer Learning on Heterogenous Feature Spaces via Spectral Transformation. ICDM 2010: 1049-1054
Coauthor Index
aka: Zhiwei Cao
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