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Journal Articles
- 2024
[j16]Dandan Li
, Zhen Xiao, Han Sun, Xingpeng Jiang, Weizhong Zhao, Xianjun Shen:
Prediction of Drug-Disease Associations Based on Multi-Kernel Deep Learning Method in Heterogeneous Graph Embedding. IEEE ACM Trans. Comput. Biol. Bioinform. 21(1): 120-128 (2024)- 2023
- [j15]Weizhong Zhao, Xueling Yuan, Xianjun Shen, Xingpeng Jiang, Chuan Shi, Tingting He, Xiaohua Hu:
Improving drug-drug interactions prediction with interpretability via meta-path-based information fusion. Briefings Bioinform. 24(2) (2023) - [j14]Yue Wang, Han Sun, Haodong Wang, Dandan Li, Weizhong Zhao, Xingpeng Jiang, Xianjun Shen:
An Effective Model for Predicting Phage-Host Interactions Via Graph Embedding Representation Learning With Multi-Head Attention Mechanism. IEEE J. Biomed. Health Informatics 27(6): 3061-3071 (2023) - 2019
- [j13]Jincai Yang, Lulu Yang, Yanyan Wang, Xianjun Shen:
基于神经网络的关系词非充盈态复句层次的自动识别 (Hierarchy Division of Compound Sentence with Non-saturated Relation Word via Neural Network). 计算机科学 46(11A): 103-107 (2019) - 2018
- [j12]Xianchao Zhu, Xianjun Shen, Xingpeng Jiang, Kaiping Wei, Tingting He, Yuanyuan Ma, Jiaqi Liu, Xiaohua Hu:
Nonlinear expression and visualization of nonmetric relationships in genetic diseases and microbiome data. BMC Bioinform. 19-S(20): 37-48 (2018) - 2017
- [j11]Jincai Yang, Huichao Gu, Xingpeng Jiang, Qingyang Huang, Xiaohua Hu, Xianjun Shen:
Identifying the Risky SNP of Osteoporosis with ID3-PEP Decision Tree Algorithm. Complex. 2017: 9194801:1-9194801:8 (2017) - [j10]Jincai Yang, Zhongzhong Chen, Xianjun Shen, Jinzhu Hu:
基于汉语复句的语义相关度计算及类别的标识 (Word Semantic Relevancy Computation and Categories Identification Based on Chinese Compound Sentences). 计算机科学 44(5): 280-284 (2017) - 2016
- [j9]Tingting He, Peng Li, Xiaohua Hu, Xianjun Shen, Yan Wang, Junmin Zhao:
A novel proteins complex identification based on connected affinity and multi-level seed extension. Int. J. Data Min. Bioinform. 14(1): 51-70 (2016) - [j8]Wenjie Hu, Yao Chen, Jincai Yang, Xianjun Shen:
Mobile nodes localisation based on hill climbing optimisation. Int. J. Wirel. Mob. Comput. 11(1): 18-23 (2016) - 2015
- [j7]Xianjun Shen, Li Yi, Yang Yi, Jincai Yang, Tingting He, Xiaohua Hu:
Dynamic identifying protein functional modules based on adaptive density modularity in protein-protein interaction networks. BMC Bioinform. 16(S12): S5 (2015) - [j6]Xianjun Shen, Yang Yi, Wenyong Dong, Shuaiyu Guo, Junyan Li, Fan Chen:
Face detection based on particle swarm optimisation-free entropy minimisation. Int. J. Comput. Sci. Math. 6(2): 129-138 (2015) - [j5]Xianjun Shen, Yanli Zhao, Yanan Li, Yang Yi, Tingting He, Jincai Yang:
An integrated approach to identify protein complex based on best neighbour and modularity increment. Int. J. Data Min. Bioinform. 11(4): 458-473 (2015) - [j4]Yan Wang, Tingting He, Xingpeng Jiang, Jie Yuan, Xianjun Shen:
Weighted fusion regularisation and predicting microbial interactions with vector autoregressive model. Int. J. Data Min. Bioinform. 13(4): 378-394 (2015) - [j3]Jincai Yang, Kaikai Guo, Xianjun Shen, Jinzhu Hu:
基于贝叶斯模型的复句关系词自动识别与规则挖掘 (Automatic Identification and Rule Mining for Relation Words of Chinese Compound Sentences Based on Bayesian Model). 计算机科学 42(7): 291-294 (2015) - 2014
- [j2]Xianjun Shen, Yanli Zhao, Yanan Li, Tingting He, Jincai Yang, Xiaohua Hu:
An efficient protein complex mining algorithm based on Multistage Kernel Extension. BMC Bioinform. 15(S-12): S7 (2014) - 2012
- [j1]Xianjun Shen, Yanan Li, Caixia Chen, Jincai Yang, Dabin Zhang:
Greedy continuous particle swarm optimisation algorithm for the knapsack problems. Int. J. Comput. Appl. Technol. 44(2): 137-144 (2012)
Conference and Workshop Papers
- 2024
- [c44]Xinzi Chen, Pei Li, Weizhong Zhao, Xingpeng Jiang, Xianjun Shen:
A Novel Combined Embedding Model Based on Heterogeneous Network for Inferring Microbe-Metabolite Interactions. ISBRA (1) 2024: 196-211 - 2023
- [c43]Shengwei Ye, Weizhong Zhao, Xiaowei Xu, Xianjun Shen, Xingpeng Jiang, Tingting He:
Effective Drug Repositioning with a Novel Negative Sample Selection Algorithm. BIBM 2023: 739-744 - [c42]Ruizhe Zhang, Dandan Li, Ying Xiao, Weizhong Zhao, Xingpeng Jiang, Xianjun Shen:
An Effective Microbial-drug Relation Extraction Model Based on Dual Graph Convolutional Networks. BIBM 2023: 984-987 - [c41]Wenjie Yao, Weizhong Zhao, Xiaowei Xu, Xingpeng Jiang, Xianjun Shen, Tingting He:
Counterfactual Inference-based Data Augmentation for Drug-side effect Associations Prediction. BIBM 2023: 1643-1648 - 2022
- [c40]Pei Li, Ying Xiao, Weizhong Zhao, Xingpeng Jiang, Xianjun Shen:
Inferring microbe-metabolite interactions by heterogeneous network fusion based on graph convolution network. BIBM 2022: 154-157 - [c39]Wenjie Yao, Weizhong Zhao, Xingpeng Jiang, Xianjun Shen, Tingting He:
MPGNN-DSA: A Meta-path-based Graph Neural Network for drug-side effect association prediction. BIBM 2022: 627-632 - [c38]Shengwei Ye, Weizhong Zhao, Xianjun Shen, Xingpeng Jiang, Tingting He:
A Novel Drug Repositioning Model Based on Heterogeneous Graph Convolutional Network via Multi-task Learning. BIBM 2022: 633-638 - [c37]Xueling Yuan, Weizhong Zhao, Xianjun Shen, Xingpeng Jiang, Tingting He:
Prediction of Drug-Drug Interactions Based on Meta-path-based Fusion Mechanism in Heterogeneous Information Network. BIBM 2022: 647-652 - [c36]Haodong Wang, Han Sun, Yue Wang, Weizhong Zhao, Xingpeng Jiang, Xianjun Shen:
Predicting human microbe-disease associations based on multi-source heterogeneous graph representation learning model. BIBM 2022: 840-843 - 2021
- [c35]Ruilong Xiang, Lingling Fu, Yue Wang, Han Sun, Xianjun Shen:
A Simplex Hypergraph Clustering Method for Detecting Higher-order Modules in Microbial Network. BIBM 2021: 761-764 - 2020
- [c34]Xiangru Tang, Xianjun Shen, Yujie Wang, Yujuan Yang:
Categorizing Offensive Language in Social Networks: A Chinese Corpus, Systems and an Explanation Tool. CNCL 2020: 300-315 - 2019
- [c33]Limin Yu, Xianjun Shen, Xingpeng Jiang, Jincai Yang, Yujuan Yang, Duo Zhong:
Hypergraph Clustering Based on Intra-class Scatter Matrix for Mining Higher-order Microbial Module. BIBM 2019: 240-243 - [c32]Yujuan Yang, Xianjun Shen, Yujie Wang:
BERT-BiLSTM-CRF for Chinese Sensitive Vocabulary Recognition. ISICA 2019: 257-268 - [c31]Yujie Wang, Xianjun Shen, Yujuan Yang:
The Classification of Chinese Sensitive Information Based on BERT-CNN. ISICA 2019: 269-280 - 2018
- [c30]Xianjun Shen, Xue Gong, Xingpeng Jiang, Jincai Yang, Tingting He, Xiaohua Hu:
High-order Organization of Weighted Microbial Interaction Network. BIBM 2018: 206-209 - [c29]Xianjun Shen, Huan Zhu, Xingpeng Jiang, Xiaohua Hu, Jincai Yang:
A Novel Approach Based on Bi-Random Walk to Predict Microbe-Disease Associations. ICIC (3) 2018: 746-752 - 2017
- [c28]Xianjun Shen, Xianchao Zhu, Xingpeng Jiang, Tingting He, Xiaohua Hu:
Visualization of disease relationships by multiple maps t-SNE regularization based on Nesterov accelerated gradient. BIBM 2017: 604-607 - [c27]Jincai Yang, Fuli Zhang, Xingpeng Jiang, Xianjun Shen, Xiaohua Hu:
Classify and identify the risky loci of type 2 diabetes with computational method. BIBM 2017: 1331-1337 - [c26]Jincai Yang, Chunjie Guo, Xingpeng Jiang, Xiaohua Hu, Xianjun Shen:
Systematic characterization and prediction of tumor-associated genes in mouse using microrna. BIBM 2017: 1338-1344 - [c25]Xianjun Shen, Xianchao Zhu, Xingpeng Jiang, Li Gao, Tingting He, Xiaohua Hu:
Visualization of non-metric relationships by adaptive learning multiple maps t-SNE regularization. IEEE BigData 2017: 3882-3887 - 2016
- [c24]Xianjun Shen, Yao Chen, Xingpeng Jiang, Xiaohua Hu, Tingting He, Jincai Yang:
Predicting disease-microbe association by random walking on the heterogeneous network. BIBM 2016: 771-774 - [c23]Xianjun Shen, Jin Zhou, Xingpeng Jiang, Xiaohua Hu, Tingting He, Jincai Yang, Dan Xie:
A novel identified temporal protein complexes strategy inspired by density-distance and brainstorming process. BIBM 2016: 1269-1274 - [c22]Jincai Yang, Huichao Gu, Xingpeng Jiang, Qingyang Huang, Xiaohua Hu, Xianjun Shen:
Walking in the PPI network to identify the risky SNP of osteoporosis with decision tree algorithm. BIBM 2016: 1283-1287 - 2015
- [c21]Xianjun Shen, Yi Li, Xingpeng Jiang, Yanli Zhao, Tingting He, Jincai Yang:
Detecting temporal protein complexes based on Neighbor Closeness and time course protein interaction networks. BIBM 2015: 109-112 - [c20]Wenjie Hu, Xianjun Shen, Rui Xu:
Essential protein discovery based on network node correlation and invalidating protein node. BIBM 2015: 1141-1147 - 2014
- [c19]Tingting He, Peng Li, Xiaohua Hu, Xianjun Shen, Yan Wang, Junmin Zhao:
A novel proteins complex identification based on connected affinity and multi-level seed extension. BIBM 2014: 8-13 - [c18]Yan Wang, Xingpeng Jiang, Xiaohua Hu, Tingting He, Xianjun Shen, Jie Yuan:
Microbiome dynamics analysis using a novel multivariate vector autoregression model with weighted fusion regularization. BIBM 2014: 11-16 - [c17]Xianjun Shen, Yang Yi, Yan Wang, Xiaohui Chen, Jincai Yang, Tingting He:
A novel approach to breast cancer-related disease genes discovered through variation of density modularity. BIBM 2014: 22-27 - [c16]Minghong Fang, Xiaohua Hu, Tingting He, Yan Wang, Junmin Zhao, Xianjun Shen, Jie Yuan:
Prioritizing disease-causing genes based on network diffusion and rank concordance. BIBM 2014: 242-247 - [c15]Junmin Zhao, Tingting He, Xiaohua Hu, Yan Wang, Xianjun Shen, Minghong Fang, Jie Yuan:
A novel disease gene prediction method based on PPI network. BIBM 2014: 311-314 - 2013
- [c14]Peng Li, Xiaohua Hu, Tingting He, Junmin Zhao, Ming Zhang, Xianjun Shen:
Mining protein complexes based on connected affinity clique extension. BIBM 2013: 53-56 - [c13]Xianjun Shen, Yanli Zhao, Yanan Li, Jincai Yang, Tingting He, Xiaohua Hu:
An integrated approach to identify protein complex based on best neighbor and modularity increment. BIBM 2013: 57-60 - [c12]Xianjun Shen, Xiaohui Chen, Rui Xu, Tingting He, Jincai Yang, Xiaohua Hu:
Protein functional module detection based on closely associated degree. BIBM 2013: 61-64 - [c11]Junmin Zhao, Xiaohua Hu, Tingting He, Peng Li, Ming Zhang, Xianjun Shen:
A novel protein complex identification algorithm based on gene co-expression (PCIA-GeCo). BIBM 2013: 386-391 - [c10]Xianjun Shen, Rui Xu, Xiaohui Chen, Jincai Yang, Tingting He:
Identification of essential proteins based on network capital assessment and invalidating protein node. BIBM 2013: 615 - [c9]Xianjun Shen, Yanli Zhao, Yanan Li, Tingting He, Jincai Yang:
An efficient protein complex mining algorithm based on multistage kernel extension. BIBM 2013: 616 - 2009
- [c8]Xianjun Shen, Fan Chen, Tingting He, Zhifeng Chi, Caixia Chen:
A New Dynamical Particle Swarm Optimization Based on Principle Free Entropy Minimization. ICNC (5) 2009: 322-326 - 2007
- [c7]Zhifeng Dai, Yuanxiang Li, Bojin Zheng, Xianjun Shen:
A Distributed Coordination Framework for Adaptive Sensor Uncertainty Handling. International Conference on Computational Science (4) 2007: 1171-1174 - [c6]Xianjun Shen, Yuanxiang Li, Jincai Yang, Li Yu:
A Heuristic Particle Swarm Optimization for Cutting Stock Problem Based on Cutting Pattern. International Conference on Computational Science (4) 2007: 1175-1178 - [c5]Yuanxiang Li, Weiwu Wang, Xianjun Shen, Weiqin Ying, Bojin Zheng:
Theory of Evolutionary Algorithm: A View from Thermodynamics. International Conference on Computational Science (4) 2007: 1179-1182 - [c4]Kaiping Wei, Tao Zhang, Xianjun Shen, Jingnan Liu:
An Improved Threshold Selection Algorithm Based on Particle Swarm Optimization for Image Segmentation. ICNC (5) 2007: 591-594 - 2006
- [c3]Xianjun Shen, Yuanxiang Li, Bojin Zheng, Zhifeng Dai:
General Particle Swarm Optimization Based on Simulated Annealing for Multi-specification One-Dimensional Cutting Stock Problem. CIS 2006: 67-76 - [c2]Binbin Zheng, Yuanxiang Li, Xianjun Shen, Bojin Zheng:
A New Dynamic Particle Swarm Optimizer. SEAL 2006: 481-488 - 2002
- [c1]Xianjun Shen, Ronaldo Menezes, Hector Gutierrez:
A Coordination Architecture for Distributed Autonomous Control Systems. PDPTA 2002: 1393-1399
Informal and Other Publications
- 2011
- [i1]Bojin Zheng, Jianmin Wang, Guisheng Chen, Jian Jiang, Xianjun Shen:
Hidden Tree Structure is a Key to the Emergence of Scaling in the World Wide Web. CoRR abs/1101.5972 (2011)
Coauthor Index
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