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ORCIDPantelis G. Bagos
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2020 – today
- 2024
[j34]Aikaterini G. Chatziargyri
, Evangelia A. Stasi, Konstantinos D. Tsirigos, Zoi I. Litou, Vassiliki A. Iconomidou, Pantelis G. Bagos:
CW-PRED: Prediction of C-terminal surface anchoring sorting signals in bacteria and Archaea. J. Bioinform. Comput. Biol. 22(4): 2450021:1-2450021:18 (2024)- 2023
- [j33]Evangelos Karatzas, Fotis A. Baltoumas, Eleni Aplakidou, Panagiota I. Kontou, Panos Stathopoulos, Leonidas Stefanis, Pantelis G. Bagos, Georgios A. Pavlopoulos:
Flame (v2.0): advanced integration and interpretation of functional enrichment results from multiple sources. Bioinform. 39(8) (2023) - 2021
- [j32]Evangelos Karatzas, Maria Gkonta, Joana Hotova, Fotis A. Baltoumas, Panagiota I. Kontou, Christopher J. Bobotsis, Pantelis G. Bagos, Georgios A. Pavlopoulos:
VICTOR: A visual analytics web application for comparing cluster sets. Comput. Biol. Medicine 135: 104557 (2021) - [j31]Ahmed F. Roumia, Konstantinos D. Tsirigos, Margarita C. Theodoropoulou, Ioannis A. Tamposis, Stavros J. Hamodrakas, Pantelis G. Bagos:
OMPdb: A Global Hub of Beta-Barrel Outer Membrane Proteins. Frontiers Bioinform. 1 (2021) - [j30]Panagiota I. Kontou, Athanasia Pavlopoulou, Niki L. Dimou, Margarita C. Theodoropoulou, Georgia Braliou, Georgios N. Tsaousis, Georgios A. Pavlopoulos, Stavros J. Hamodrakas, Pantelis G. Bagos:
The human GPCR signal transduction network. Netw. Model. Anal. Health Informatics Bioinform. 10(1): 3 (2021)
2010 – 2019
- 2019
- [j29]Ioannis A. Tamposis, Konstantinos D. Tsirigos, Margarita C. Theodoropoulou, Panagiota I. Kontou, Pantelis G. Bagos:
Semi-supervised learning of Hidden Markov Models for biological sequence analysis. Bioinform. 35(13): 2208-2215 (2019) - [j28]Ioannis A. Tamposis, Konstantinos D. Tsirigos, Margarita C. Theodoropoulou, Panagiota I. Kontou, Georgios N. Tsaousis, Dimitra Sarantopoulou, Zoi I. Litou, Pantelis G. Bagos:
JUCHMME: a Java Utility for Class Hidden Markov Models and Extensions for biological sequence analysis. Bioinform. 35(24): 5309-5312 (2019) - [j27]Diego A. Forero, Sandra Lopez-Leon, Yeimy González-Giraldo, Pantelis G. Bagos:
Ten simple rules for carrying out and writing meta-analyses. PLoS Comput. Biol. 15(5) (2019) - 2018
- [j26]Artemis G. Hatzigeorgiou, Pantelis G. Bagos, Panayiotis V. Benos, Christoforos Nikolaou, Yves Moreau, Ioannis Kavakiotis:
ECCB 2018: The 17th European Conference on Computational Biology. Bioinform. 34(17): i595-i598 (2018) - [j25]Ioannis A. Tamposis, Margarita C. Theodoropoulou, Konstantinos D. Tsirigos, Pantelis G. Bagos:
Extending hidden Markov models to allow conditioning on previous observations. J. Bioinform. Comput. Biol. 16(5): 1850019:1-1850019:21 (2018) - 2017
- [j24]Niki L. Dimou, Konstantinos D. Tsirigos, Arne Elofsson, Pantelis G. Bagos:
GWAR: robust analysis and meta-analysis of genome-wide association studies. Bioinform. 33(10): 1521-1527 (2017) - [j23]Sotirios Bersimis, Athanasios Sachlas, Pantelis G. Bagos:
Discriminating membrane proteins using the joint distribution of length sums of success and failure runs. Stat. Methods Appl. 26(2): 251-272 (2017) - 2016
- [j22]Konstantinos D. Tsirigos, Arne Elofsson, Pantelis G. Bagos:
PRED-TMBB2: improved topology prediction and detection of beta-barrel outer membrane proteins. Bioinform. 32(17): 665-671 (2016) - 2015
- [j21]Patricia C. Babbitt, Pantelis G. Bagos, Amos Bairoch, Alex Bateman, Arnaud Chatonnet, Mark Jinan Chen, David J. Craik, Robert D. Finn, David E. Gloriam, Daniel H. Haft, Bernard Henrissat, Gemma L. Holliday, Vignir Ísberg, Quentin Kaas, David Landsman, Nicolas Lenfant, Gerard Manning, Nozomi Nagano, Narayanaswamy Srinivasan, Claire O'Donovan, Kim D. Pruitt, Ramanathan Sowdhamini, Neil D. Rawlings, Milton H. Saier Jr., Joanna L. Sharman, Michael Spedding, Konstantinos D. Tsirigos, Åke Västermark, Gerrit Vriend:
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. Database J. Biol. Databases Curation 2015 (2015) - 2012
- [c2]Danai K. Fimereli, Konstantinos D. Tsirigos, Zoi I. Litou, Theodore D. Liakopoulos, Pantelis G. Bagos, Stavros J. Hamodrakas:
CW-PRED: A HMM-Based Method for the Classification of Cell Wall-Anchored Proteins of Gram-Positive Bacteria. SETN 2012: 285-290 - 2011
- [j20]Georgios A. Pavlopoulos, Maria Secrier, Charalampos N. Moschopoulos, Theodoros G. Soldatos, Sophia Kossida, Jan Aerts, Reinhard Schneider, Pantelis G. Bagos:
Using graph theory to analyze biological networks. BioData Min. 4: 10 (2011) - [j19]Konstantinos D. Tsirigos, Pantelis G. Bagos, Stavros J. Hamodrakas:
OMPdb: a database of β-barrel outer membrane proteins from Gram-negative bacteria. Nucleic Acids Res. 39(Database-Issue): 324-331 (2011) - 2010
- [j18]Venkata P. Satagopam, Margarita C. Theodoropoulou, Christos K. Stampolakis, Georgios A. Pavlopoulos, Nikolaos Papandreou, Pantelis G. Bagos, Reinhard Schneider, Stavros J. Hamodrakas:
GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques. Database J. Biol. Databases Curation 2010 (2010) - [j17]Georgios N. Tsaousis, Konstantinos D. Tsirigos, Xanthi D. Andrianou, Theodore D. Liakopoulos, Pantelis G. Bagos, Stavros J. Hamodrakas:
ExTopoDB: a database of experimentally derived topological models of transmembrane proteins. Bioinform. 26(19): 2490-2492 (2010) - [j16]Pantelis G. Bagos, Elisanthi P. Nikolaou, Theodore D. Liakopoulos, Konstantinos D. Tsirigos:
Combined prediction of Tat and Sec signal peptides with hidden Markov models. Bioinform. 26(22): 2811-2817 (2010)
2000 – 2009
- 2009
- [j15]Pantelis G. Bagos, Georgios N. Tsaousis, Stavros J. Hamodrakas:
How Many 3D Structures Do We Need to Train a Predictor? Genom. Proteom. Bioinform. 7(3): 128-137 (2009) - 2008
- [j14]Margarita C. Theodoropoulou, Pantelis G. Bagos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas:
gpDB: a database of GPCRs, G-proteins, effectors and their interactions. Bioinform. 24(12): 1471-1472 (2008) - [j13]Zoi I. Litou, Pantelis G. Bagos, Konstantinos D. Tsirigos, Theodore D. Liakopoulos, Stavros J. Hamodrakas:
Prediction of Cell Wall Sorting Signals in Gram-Positive bacteria with a Hidden Markov Model: Application to Complete genomes. J. Bioinform. Comput. Biol. 6(2): 387-401 (2008) - 2006
- [j12]Pantelis G. Bagos, Theodore D. Liakopoulos, Stavros J. Hamodrakas:
Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins. BMC Bioinform. 7: 189 (2006) - [j11]Ioannis K. Valavanis, Pantelis G. Bagos, Ioannis Z. Emiris:
beta-Barrel transmembrane proteins: Geometric modelling, detection of transmembrane region, and structural properties. Comput. Biol. Chem. 30(6): 416-424 (2006) - [j10]Evangelia Petsalaki, Pantelis G. Bagos, Zoi I. Litou, Stavros J. Hamodrakas:
PredSL: A Tool for the N-terminal Sequence-based Prediction of Protein Subcellular Localization. Genom. Proteom. Bioinform. 4(1): 48-55 (2006) - 2005
- [b1]Pantelis G. Bagos:
Πρόγνωση δομής και λειτουργίας μεμβρανικών πρωτεϊνών. National and Kapodistrian University of Athens, Greece, 2005 - [j9]Nikolaos G. Sgourakis, Pantelis G. Bagos, Stavros J. Hamodrakas:
Prediction of the coupling specificity of GPCRs to four families of G-proteins using hidden Markov models and artificial neural networks. Bioinform. 21(22): 4101-4106 (2005) - [j8]Pantelis G. Bagos, Theodore Liakopoulos, Stavros J. Hamodrakas:
Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method. BMC Bioinform. 6: 7 (2005) - [j7]Evangelia Petsalakis, Pantelis G. Bagos, Zoi I. Litou, Stavros J. Hamodrakas:
N-terminal sequence-based prediction of subcellular location. BMC Bioinform. 6(S-3) (2005) - [j6]Nikolaos G. Sgourakis, Pantelis G. Bagos, Panagiotis K. Papasaikas, Stavros J. Hamodrakas:
A method for the prediction of GPCRs coupling specificity to G-proteins using refined profile Hidden Markov Models. BMC Bioinform. 6: 104 (2005) - 2004
- [j5]Ioannis C. Spyropoulos, Theodore Liakopoulos, Pantelis G. Bagos, Stavros J. Hamodrakas:
TMRPres2D: high quality visual representation of transmembrane protein models. Bioinform. 20(17): 3258-3260 (2004) - [j4]Pantelis G. Bagos, Theodore Liakopoulos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas:
A Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteins. BMC Bioinform. 5: 29 (2004) - [j3]Antigoni L. Elefsinioti, Pantelis G. Bagos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas:
A database for G proteins and their interaction with GPCRs. BMC Bioinform. 5: 208 (2004) - [j2]Panagiotis K. Papasaikas, Pantelis G. Bagos, Zoi I. Litou, Vasilis J. Promponas, Stavros J. Hamodrakas:
PRED-GPCR: GPCR recognition and family classification server. Nucleic Acids Res. 32(Web-Server-Issue): 380-382 (2004) - [j1]Pantelis G. Bagos, Theodore Liakopoulos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas:
PRED-TMBB: a web server for predicting the topology of ?barrel outer membrane proteins. Nucleic Acids Res. 32(Web-Server-Issue): 400-404 (2004) - [c1]Pantelis G. Bagos, Theodore Liakopoulos, Stavros J. Hamodrakas:
Faster Gradient Descent Training of Hidden Markov Models, Using Individual Learning Rate Adaptation. ICGI 2004: 40-52
Coauthor Index
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