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ORCIDGeorgios A. Pavlopoulos
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2020 – today
- 2023
[j27]Evangelos Karatzas
, Fotis A. Baltoumas, Eleni Aplakidou, Panagiota I. Kontou, Panos Stathopoulos, Leonidas Stefanis, Pantelis G. Bagos, Georgios A. Pavlopoulos:
Flame (v2.0): advanced integration and interpretation of functional enrichment results from multiple sources. Bioinform. 39(8) (2023)- [j26]Fotis A. Baltoumas, Evangelos Karatzas, David Páez-Espino, Nefeli K. Venetsianou, Eleni Aplakidou, Anastasis Oulas, Robert D. Finn, Sergey Ovchinnikov, Evangelos Pafilis, Nikos Kyrpides, Georgios A. Pavlopoulos:
Exploring microbial functional biodiversity at the protein family level - From metagenomic sequence reads to annotated protein clusters. Frontiers Bioinform. 3 (2023) - [i2]Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Muaaz G. Awan, Georgios A. Pavlopoulos, Ariful Azad, Nikos Kyrpides, Leonid Oliker, Katherine A. Yelick, Aydin Buluç:
Extreme-scale many-against-many protein similarity search. CoRR abs/2303.01845 (2023) - 2022
- [j25]Mikaela Koutrouli, Evangelos Karatzas, Katerina Papanikolopoulou, Georgios A. Pavlopoulos:
NORMA: The Network Makeup Artist - A Web Tool for Network Annotation Visualization. Genom. Proteom. Bioinform. 20(3): 578-586 (2022) - [c8]Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Muaaz G. Awan, Georgios A. Pavlopoulos, Ariful Azad, Nikos Kyrpides, Leonid Oliker, Katherine A. Yelick, Aydin Buluç:
Extreme-Scale Many-against-Many Protein Similarity Search. SC 2022: 1:1-1:12 - 2021
- [j24]Evangelos Karatzas, Maria Gkonta, Joana Hotova, Fotis A. Baltoumas, Panagiota I. Kontou, Christopher J. Bobotsis, Pantelis G. Bagos, Georgios A. Pavlopoulos:
VICTOR: A visual analytics web application for comparing cluster sets. Comput. Biol. Medicine 135: 104557 (2021) - [j23]Evangelos Karatzas, Fotis A. Baltoumas, Nikolaos A. Panayiotou, Reinhard Schneider, Georgios A. Pavlopoulos:
Arena3Dweb: interactive 3D visualization of multilayered networks. Nucleic Acids Res. 49(Webserver-Issue): 36-45 (2021) - [j22]Evangelos Theodorakis, Andreas N. Antonakis, Ismini Baltsavia, Georgios A. Pavlopoulos, Martina Samiotaki, Grigoris D. Amoutzias, Theodosios Theodosiou, Oreste Acuto, Georgios Efstathiou, Ioannis Iliopoulos:
ProteoSign v2: a faster and evolved user-friendly online tool for statistical analyses of differential proteomics. Nucleic Acids Res. 49(Webserver-Issue): 573-577 (2021) - [j21]Panagiota I. Kontou, Athanasia Pavlopoulou, Niki L. Dimou, Margarita C. Theodoropoulou, Georgia Braliou, Georgios N. Tsaousis, Georgios A. Pavlopoulos, Stavros J. Hamodrakas, Pantelis G. Bagos:
The human GPCR signal transduction network. Netw. Model. Anal. Health Informatics Bioinform. 10(1): 3 (2021) - 2020
- [c7]Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Georgios A. Pavlopoulos, Ariful Azad, Aydin Buluç:
Distributed many-to-many protein sequence alignment using sparse matrices. SC 2020: 75 - [i1]Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Georgios A. Pavlopoulos, Ariful Azad, Aydin Buluç:
Distributed Many-to-Many Protein Sequence Alignment using Sparse Matrices. CoRR abs/2009.14467 (2020)
2010 – 2019
- 2017
- [j20]Georgios A. Pavlopoulos, David Páez-Espino, Nikos Kyrpides, Ioannis Iliopoulos:
Empirical Comparison of Visualization Tools for Larger-Scale Network Analysis. Adv. Bioinformatics 2017: 1278932:1-1278932:8 (2017) - [j19]David Páez-Espino, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, Ernest Szeto, Manoj Pillay, Jinghua Huang, Victor M. Markowitz, Torben Nielsen, Marcel Huntemann, T. B. K. Reddy, Georgios A. Pavlopoulos, Matthew B. Sullivan, Barbara J. Campbell, Feng Chen, Katherine D. McMahon, Steven J. Hallam, Vincent J. Denef, Ricardo Cavicchioli, Sean M. Caffrey, Wolfgang R. Streit, John Webster, Kim M. Handley, Ghasem H. Salekdeh, Nicolas Tsesmetzis, João C. Setubal, Phillip B. Pope, Wen-Tso Liu, Adam R. Rivers, Natalia Ivanova, Nikos Kyrpides:
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses. Nucleic Acids Res. 45(Database-Issue): D457-D465 (2017) - [j18]Georgios Efstathiou, Andreas N. Antonakis, Georgios A. Pavlopoulos, Theodosios Theodosiou, Peter Divanach, David C. Trudgian, Benjamin Thomas, Nikolas Papanikolaou, Michalis Aivaliotis, Oreste Acuto, Ioannis Iliopoulos:
ProteoSign: an end-user online differential proteomics statistical analysis platform. Nucleic Acids Res. 45(Webserver-Issue): W300-W306 (2017) - 2016
- [j17]Nikolas Papanikolaou, Georgios A. Pavlopoulos, Theodosios Theodosiou, Ioannis S. Vizirianakis, Ioannis Iliopoulos:
DrugQuest - a text mining workflow for drug association discovery. BMC Bioinform. 17(S-5): 182 (2016) - 2015
- [j16]Nikolas Papanikolaou, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, Vasilis J. Promponas, Ioannis Iliopoulos:
BioTextQuest+: a knowledge integration platform for literature mining and concept discovery. Bioinform. 31(6): 979 (2015) - 2014
- [j15]Nikolas Papanikolaou, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, Vasilis J. Promponas, Ioannis Iliopoulos:
BioTextQuest+: a knowledge integration platform for literature mining and concept discovery. Bioinform. 30(22): 3249-3256 (2014) - 2013
- [j14]Georgios A. Pavlopoulos, Anastasis Oulas, Ernesto Iacucci, Alejandro Sifrim, Yves Moreau, Reinhard Schneider, Jan Aerts, Ioannis Iliopoulos:
Unraveling genomic variation from next generation sequencing data. BioData Min. 6: 13 (2013) - [c6]Evangelos Pafilis, Georgios A. Pavlopoulos, Venkata P. Satagopam, Nikolas Papanikolaou, Heiko Horn, Christos Arvanitidis, Lars Juhl Jensen, Reinhard Schneider, Ioannis Iliopoulos:
OnTheFly 2.0: A tool for automatic annotation of files and biological information extraction. BIBE 2013: 1-4 - 2012
- [j13]Theodoros G. Soldatos, Seán I. O'Donoghue, Venkata P. Satagopam, Adriano Barbosa-Silva, Georgios A. Pavlopoulos, Ana Carolina Wanderley-Nogueira, Nina da Mota Soares-Cavalcanti, Reinhard Schneider:
Caipirini: using gene sets to rank literature. BioData Min. 5: 1 (2012) - [j12]Ernesto Iacucci, Léon-Charles Tranchevent, Dusan Popovic, Georgios A. Pavlopoulos, Bart De Moor, Reinhard Schneider, Yves Moreau:
ReLiance: a machine learning and literature-based prioritization of receptor - ligand pairings. Bioinform. 28(18): 569-574 (2012) - [j11]Maria Secrier, Georgios A. Pavlopoulos, Jan Aerts, Reinhard Schneider:
Arena3D: visualizing time-driven phenotypic differences in biological systems. BMC Bioinform. 13: 45 (2012) - [j10]Ernesto Iacucci, Léon-Charles Tranchevent, Dusan Popovic, Georgios A. Pavlopoulos, Bart De Moor, Reinhard Schneider, Yves Moreau:
A bioinformatics e-dating story: computational prediction and prioritization of receptor-ligand pairs. BMC Bioinform. 13(S-18): A7 (2012) - [c5]Thomas Boogaerts, Léon-Charles Tranchevent, Georgios A. Pavlopoulos, Jan Aerts, Joos Vandewalle:
Visualizing high dimensional datasets using parallel coordinates: Application to gene prioritization. BIBE 2012: 52-57 - [c4]Dusan Popovic, Alejandro Sifrim, Georgios A. Pavlopoulos, Yves Moreau, Bart De Moor:
A Simple Genetic Algorithm for Biomarker Mining. PRIB 2012: 222-232 - [c3]Ernesto Iacucci, Dusan Popovic, Georgios A. Pavlopoulos, Léon-Charles Tranchevent, Marijke Bauters, Bart De Moor, Yves Moreau:
Towards Better Prioritization of Epigenetically Modified DNA Regions. SETN 2012: 270-277 - [c2]Theodoros G. Soldatos, Georgios A. Pavlopoulos:
Mining Cell Cycle Literature Using Support Vector Machines. SETN 2012: 278-284 - 2011
- [j9]Georgios A. Pavlopoulos, Maria Secrier, Charalampos N. Moschopoulos, Theodoros G. Soldatos, Sophia Kossida, Jan Aerts, Reinhard Schneider, Pantelis G. Bagos:
Using graph theory to analyze biological networks. BioData Min. 4: 10 (2011) - 2010
- [j8]Georgios A. Pavlopoulos, Theodoros G. Soldatos, Adriano Barbosa-Silva, Reinhard Schneider:
A reference guide for tree analysis and visualization. BioData Min. 3: 1 (2010) - [j7]Venkata P. Satagopam, Margarita C. Theodoropoulou, Christos K. Stampolakis, Georgios A. Pavlopoulos, Nikolaos Papandreou, Pantelis G. Bagos, Reinhard Schneider, Stavros J. Hamodrakas:
GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques. Database J. Biol. Databases Curation 2010 (2010) - [j6]Adriano Barbosa-Silva, Theodoros G. Soldatos, Ivan L. F. Magalhães, Georgios A. Pavlopoulos, Jean-Fred Fontaine, Miguel A. Andrade-Navarro, Reinhard Schneider, José Miguel Ortega:
LAITOR - Literature Assistant for Identification of Terms co-Occurrences and Relationships. BMC Bioinform. 11: 70 (2010)
2000 – 2009
- 2009
- [b1]Georgios A. Pavlopoulos:
Data integration and visualization techniques in systems biology. Heidelberg University, 2009, pp. 1-124 - [j5]Georgios A. Pavlopoulos, Evangelos Pafilis, Michael Kuhn, Sean D. Hooper, Reinhard Schneider:
OnTheFly: a tool for automated document-based text annotation, data linking and network generation. Bioinform. 25(7): 977-978 (2009) - [j4]Georgios A. Pavlopoulos, Charalampos N. Moschopoulos, Sean D. Hooper, Reinhard Schneider, Sophia Kossida:
jClust: a clustering and visualization toolbox. Bioinform. 25(15): 1994-1996 (2009) - [j3]Charalampos N. Moschopoulos, Georgios A. Pavlopoulos, Reinhard Schneider, Spiridon D. Likothanassis, Sophia Kossida:
GIBA: a clustering tool for detecting protein complexes. BMC Bioinform. 10(S-6) (2009) - 2008
- [j2]Georgios A. Pavlopoulos, Anna-Lynn Wegener, Reinhard Schneider:
A survey of visualization tools for biological network analysis. BioData Min. 1 (2008) - [j1]Georgios A. Pavlopoulos, Seán I. O'Donoghue, Venkata P. Satagopam, Theodoros G. Soldatos, Evangelos Pafilis, Reinhard Schneider:
Arena3D: visualization of biological networks in 3D. BMC Syst. Biol. 2: 104 (2008) - [c1]Charalampos N. Moschopoulos, Georgios A. Pavlopoulos, Spiridon D. Likothanassis, Sofia Kossida:
An enhanced Markov clustering method for detecting protein complexes. BIBE 2008: 1-6
Coauthor Index
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