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ORCIDNoriko Hiroi
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2010 – 2019
- 2013
[j4]Hiromu Takizawa, Kazushige Nakamura, Akito Tabira, Yoichi Chikahara
, Tatsuhiro Matsui, Noriko Hiroi, Akira Funahashi:
LibSBMLSim: a reference implementation of fully functional SBML simulator. Bioinform. 29(11): 1474-1476 (2013)- [j3]Roland Keller, Alexander Dörr, Akito Tabira, Akira Funahashi, Michael J. Ziller, Richard R. Adams, Nicolas Rodriguez, Nicolas Le Novère, Noriko Hiroi, Hannes Planatscher, Andreas Zell, Andreas Dräger:
The systems biology simulation core algorithm. BMC Syst. Biol. 7: 55 (2013) - [c15]Noriko Hiroi, Keisuke Iba, Akito Tabira, Takahiro Okuhara, Takeshi Kubojima, Takumi Hiraiwa, Tetsuya J. Kobayashi, Kotaro Oka, Akira Funahashi:
In vivo oriented modeling with consideration of intracellular crowding. EMBC 2013: 2716-2719 - 2012
- [j2]Noriko Hiroi, Michael Klann, Keisuke Iba, Pablo de Heras Ciechomski, Shuji Yamashita, Akito Tabira, Takahiro Okuhara, Takeshi Kubojima, Yasunori Okada, Kotaro Oka, Robin Mange, Michael Unger, Akira Funahashi, Heinz Koeppl:
From Microscopy Data to in silico Environments for in vivo Oriented Simulations. EURASIP J. Bioinform. Syst. Biol. 2012: 7 (2012) - 2010
- [j1]Hideki Yamada, Yui Ogawa, Tomonori Ooya, Tomoya Ishimori, Yasunori Osana, Masato Yoshimi, Yuri Nishikawa, Akira Funahashi, Noriko Hiroi, Hideharu Amano, Yuichiro Shibata, Kiyoshi Oguri:
Automatic Pipeline Construction Focused on Similarity of Rate Law Functions for an FPGA-based Biochemical Simulator. IPSJ Trans. Syst. LSI Des. Methodol. 3: 244-256 (2010) - [c14]Yui Ogawa, Tomonori Ooya, Yasunori Osana, Masato Yoshimi, Yuri Nishikawa, Akira Funahashi, Noriko Hiroi, Hideharu Amano, Yuichiro Shibata, Kiyoshi Oguri:
A datapath classification method for FPGA-based scientific application accelerator systems. FPT 2010: 441-444
2000 – 2009
- 2009
- [c13]Tomoya Ishimori, Hideki Yamada, Yuichiro Shibata, Yasunori Osana, Masato Yoshimi, Yuri Nishikawa, Hideharu Amano, Akira Funahashi, Noriko Hiroi, Kiyoshi Oguri:
Pipeline Scheduling with Input Port Constraints for an FPGA-Based Biochemical Simulator. ARC 2009: 368-373 - [c12]Tomonori Ooya, Hideki Yamada, Tomoya Ishimori, Yuichiro Shibata, Yasunori Osana, Kiyoshi Oguri, Masato Yoshimi, Yuri Nishikawa, Akira Funahashi, Noriko Hiroi, Hideharu Amano:
Configuring area and performance: Empirical evaluation on an FPGA-based biochemical simulator. FPL 2009: 679-682 - [c11]Hideki Yamada, Yasunori Osana, Tomoya Ishimori, Tomonori Ooya, Masato Yoshimi, Yuri Nishikawa, Akira Funahashi, Noriko Hiroi, Hideharu Amano, Yuichiro Shibata, Kiyoshi Oguri:
A Modular Approach to Heterogeneous Biochemical Model Simulation on an FPGA. ReConFig 2009: 125-130 - 2008
- [c10]Masato Yoshimi, Yuri Nishikawa, Yasunori Osana, Akira Funahashi, Yuichiro Shibata, Hideki Yamada, Noriko Hiroi, Hiroaki Kitano, Hideharu Amano:
Practical implementation of a network-based stochastic biochemical simulation system on an FPGA. FPL 2008: 663-666 - 2007
- [c9]Masato Yoshimi, Yow Iwaoka, Yuri Nishikawa, Toshinori Kojima, Yasunori Osana, Akira Funahashi, Noriko Hiroi, Yuichiro Shibata, Naoki Iwanaga, Hideki Yamada, Hiroaki Kitano, Hideharu Amano:
FPGA Implementation of a Data-Driven Stochastic Biochemical Simulator with the Next Reaction Method. FPL 2007: 254-259 - [c8]Hideki Yamada, Naoki Iwanaga, Yuichiro Shibata, Yasunori Osana, Masato Yoshimi, Yow Iwaoka, Yuri Nishikawa, Toshinori Kojima, Hideharu Amano, Akira Funahashi, Noriko Hiroi, Hiroaki Kitano, Kiyoshi Oguri:
A Combining technique of rate law functions for a cost-effective reconfigurable biological simulator. FPL 2007: 808-811 - [c7]Masato Yoshimi, Yuri Nishikawa, Toshinori Kojima, Yasunori Osana, Akira Funahashi, Noriko Hiroi, Yuichiro Shibata, Hideki Yamada, Hiroaki Kitano, Hideharu Amano:
A Framework for Implementing a Network-Based Stochastic Biochemical Simulator on an FPGA. FPT 2007: 193-200 - 2006
- [c6]Yasunori Osana, Masato Yoshimi, Akira Funahashi, Noriko Hiroi, Yuichiro Shibata, Naoki Iwanaga, Hiroaki Kitano, Hideharu Amano:
Performance Evaluation of an Fpga-Based Biochemical Simulator ReCSip. FPL 2006: 1-6 - [c5]Masato Yoshimi, Yasunori Osana, Yow Iwaoka, Yuri Nishikawa, Toshinori Kojima, Akira Funahashi, Noriko Hiroi, Yuichiro Shibata, Naoki Iwanaga, Hiroaki Kitano, Hideharu Amano:
An FPGA Implementation of High Throughput Stochastic Simulator for Large-Scale Biochemical Systems. FPL 2006: 1-6 - 2005
- [c4]Yasunori Osana, Yow Iwaoka, Tomonori Fukushima, Masato Yoshimi, Akira Funahashi, Noriko Hiroi, Yuichiro Shibata, Naoki Iwanaga, Hiroaki Kitano, Hideharu Amano:
A Framework for ODE-Based Multimodel Biochemical Simulations on an FPGA. FPL 2005: 574-577 - [c3]Naoki Iwanaga, Yuichiro Shibata, Masato Yoshimi, Yasunori Osana, Yow Iwaoka, Tomonori Fukushima, Hideharu Amano, Akira Funahashi, Noriko Hiroi, Hiroaki Kitano, Kiyoshi Oguri:
Efficient Scheduling of Rate Law Functions for ODE-Based Multimodel Biochemical Simulation on an FPGA. FPL 2005: 666-669 - [c2]Masato Yoshimi, Yasunori Osana, Yow Iwaoka, Akira Funahashi, Noriko Hiroi, Yuichiro Shibata, Naoki Iwanaga, Hiroaki Kitano, Hideharu Amano:
The Design of Scalable Stochastic Biochemical Simulator on FPGA. FPT 2005: 339-340 - [c1]Yasunori Osana, Tomonori Fukushima, Masato Yoshimi, Yow Iwaoka, Yuichiro Shibata, Hiroaki Kitano, Akira Funahashi, Noriko Hiroi, Hideharu Amano:
An FPGA-Based, Multi-model Simulation Method for Biochemical Systems. IPDPS 2005
Coauthor Index
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