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ORCIDEURASIP Journal on Bioinformatics and Systems Biology, Volume 2012
Volume 2012, 2012
- Chetan Kumar, Alok Choudhary:
A top-down approach to classify enzyme functional classes and sub-classes using random forest. 1 - Florian Nigsch
, Janna Hutz, Ben Cornett, Douglas W. Selinger, Gregory McAllister, Somnath Bandyopadhyay, Joseph Loureiro, Jeremy L. Jenkins:
Determination of minimal transcriptional signatures of compounds for target prediction. 2 - Seyedbehzad Nabavi, Cranos M. Williams:
A novel cost function to estimate parameters of oscillatory biochemical systems. 3 - Jan Hasenauer, Julian Heinrich, Malgorzata Doszczak, Peter Scheurich, Daniel Weiskopf, Frank Allgöwer:
A visual analytics approach for models of heterogeneous cell populations. 4 - David Murrugarra, Alan Veliz-Cuba, Boris Aguilar, Seda Arat, Reinhard C. Laubenbacher:
Modeling stochasticity and variability in gene regulatory networks. 5 - Onder Suvak, Alper Demir:
Phase computations and phase models for discrete molecular oscillators. 6 - Noriko Hiroi, Michael Klann, Keisuke Iba, Pablo de Heras Ciechomski, Shuji Yamashita, Akito Tabira, Takahiro Okuhara, Takeshi Kubojima, Yasunori Okada, Kotaro Oka, Robin Mange, Michael Unger, Akira Funahashi, Heinz Koeppl:
From Microscopy Data to in silico Environments for in vivo Oriented Simulations. 7 - Kirk K. Durston, David K. Y. Chiu, Andrew K. C. Wong, Gary C. L. Li:
Statistical discovery of site inter-dependencies in sub-molecular hierarchical protein structuring. 8 - Aleksandr Andreychenko, Linar Mikeev, David Spieler, Verena Wolf:
Approximate maximum likelihood estimation for stochastic chemical kinetics. 9 - Daniela Besozzi, Paolo Cazzaniga, Dario Pescini, Giancarlo Mauri, Sonia Colombo, Enzo Martegani:
The role of feedback control mechanisms on the establishment of oscillatory regimes in the Ras/cAMP/PKA pathway in S. cerevisiae. 10 - Peteris Zikmanis, Inara Kampenusa:
Relationships between kinetic constants and the amino acid composition of enzymes from the yeast Saccharomyces cerevisiae glycolysis pathway. 11 - Rajasekhar Kakumani, M. Omair Ahmad, Vijay Kumar Devabhaktuni:
Identification of CpG Islands in DNA Sequences using Statistically Optimal Null Filters. 12 - Tomasz M. Ignac, Nikita A. Sakhanenko, David J. Galas:
Relations between the set-complexity and the structure of graphs and their sub-graphs. 13 - Ronny Feuer, Katrin Gottlieb, Gero Viertel, Johannes Georg Klotz, Steffen Schober, Martin Bossert, Oliver Sawodny, Georg A. Sprenger, Michael Ederer:
Model-based analysis of an adaptive evolution experiment with Escherichia coli in a pyruvate limited continuous culture with glycerol. 14 - Ryan Bressler, Jake Lin, Andrea Eakin, Thomas Robinson, Richard Kreisberg, Hector Rovira, Theo A. Knijnenburg, John Boyle, Ilya Shmulevich:
Fastbreak: a tool for analysis and visualization of structural variations in genomic data. 15 - Ahmad A. Rushdi, Jamal Tuqan, Thomas Strohmer:
Map-invariant spectral analysis for the identification of DNA periodicities. 16 - Martin Puchinger, Clemens Zarzer, Philipp Kügler, Erwin Gaubitzer, Gottfried Köhler:
In vitro detection of adrenocorticotropic hormone levels by fluorescence correlation spectroscopy immunoassay for mathematical modeling of glucocorticoid-mediated feedback mechanisms. 17 - Bilal Wajid, Erchin Serpedin, Mohamed N. Nounou, Hazem N. Nounou:
Optimal reference sequence selection for genome assembly using minimum description length principle. 18 - Xiangfang Li, Lijun Qian, Edward R. Dougherty:
Dynamical modeling of drug effect using hybrid systems. 19
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