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2020 – today
- 2024
[j17]Peiying Cai, Mark D. Robinson
, Simone Tiberi:
DESpace: spatially variable gene detection via differential expression testing of spatial clusters. Bioinform. 40(2) (2024)- [j16]Mark D. Robinson, Peiying Cai, Martin Emons, Reto Gerber, Pierre-Luc Germain, Samuel Gunz, Siyuan Luo, Giulia Moro, Emanuel Sonder, Anthony Sonrel, Jiayi Wang, David Wissel, Izaskun Mallona:
Ten simple rules for computational biologists collaborating with wet lab researchers. PLoS Comput. Biol. 20(6): 1012174 (2024) - [j15]Felix Ezequiel Gerbaldo, Emanuel Sonder, Vincent Fischer, Selina Frei, Jiayi Wang, Katharina Gapp, Mark D. Robinson, Pierre-Luc Germain:
On the identification of differentially-active transcription factors from ATAC-seq data. PLoS Comput. Biol. 20(10): 1011971 (2024) - [i5]Yu-Ning Huang, Michael I. Love, Cynthia Flaire Ronkowski, Dhrithi Deshpande, Lynn M. Schriml, Annie Wong-Beringer, Barend Mons, Russell Corbett-Detig, Christopher I Hunter, Jason H. Moore, Lana X. Garmire, T. B. K. Reddy, Winston A. Hide, Atul J. Butte, Mark D. Robinson, Serghei Mangul:
Perceptual and technical barriers in sharing and formatting metadata accompanying omics studies. CoRR abs/2401.02965 (2024) - 2021
- [j14]Reto Gerber, Mark D. Robinson:
Censcyt: censored covariates in differential abundance analysis in cytometry. BMC Bioinform. 22(1): 235 (2021) - 2020
- [i4]Ruizhu Huang, Charlotte Soneson, Felix G. M. Ernst, Kevin C. Rue-Albrecht, Guangchuang Yu, Stephanie C. Hicks, Mark D. Robinson:
TreeSummarizedExperiment: a S4 class for data with hierarchical structure. F1000Research 9: 1246 (2020) - [i3]Helena L. Crowell, Stéphane Chevrier, Andrea Jacobs, Sujana Sivapatham, Tumor Profiler consortium, Bernd Bodenmiller, Mark D. Robinson:
An R-based reproducible and user-friendly preprocessing pipeline for CyTOF data. F1000Research 9: 1263 (2020)
2010 – 2019
- 2019
- [j13]Jochen T. Bick, Shuqin Zeng, Mark D. Robinson, Susanne E. Ulbrich, Stefan Bauersachs:
Mammalian Annotation Database for improved annotation and functional classification of Omics datasets from less well-annotated organisms. Database J. Biol. Databases Curation 2019: baz086 (2019) - [j12]Mark D. Robinson:
Financializing epistemic norms in contemporary biomedical innovation. Synth. 196(11): 4391-4407 (2019) - [i2]David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth:
12 Grand Challenges in Single-Cell Data Science. PeerJ Prepr. 7: e27885 (2019) - 2018
- [j11]Charlotte Soneson, Mark D. Robinson:
Towards unified quality verification of synthetic count data with countsimQC. Bioinform. 34(4): 691-692 (2018) - [i1]Angelo Duò, Mark D. Robinson, Charlotte Soneson:
A systematic performance evaluation of clustering methods for single-cell RNA-seq data. F1000Research 7: 1141 (2018) - 2013
- [c2]Haoyang Cai, Nitin Kumar, Homayoun C. Bagheri, Christian von Mering, Mark D. Robinson, Michael Baudis:
Chromothripsis-like patterns are recurring, but heterogeneously distributed features in cancer: A survey of 22, 347 genomic copy number profiles. IWBBIO 2013: 49 - 2012
- [j10]Marc Fiume, Eric J. M. Smith, Andrew Brook, Dario Strbenac, Brian Turner, Aziz M. Mezlini, Mark D. Robinson, Shoshana J. Wodak, Michael Brudno:
Savant Genome Browser 2: visualization and analysis for population-scale genomics. Nucleic Acids Res. 40(Web-Server-Issue): 615-621 (2012) - 2010
- [j9]Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth:
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinform. 26(1): 139-140 (2010) - [j8]Aaron L. Statham, Dario Strbenac, Marcel W. Coolen, Clare Stirzaker, Susan J. Clark, Mark D. Robinson:
Repitools: an R package for the analysis of enrichment-based epigenomic data. Bioinform. 26(13): 1662-1663 (2010)
2000 – 2009
- 2009
- [j7]Mark D. Robinson, Terence P. Speed:
Differential splicing using whole-transcript microarrays. BMC Bioinform. 10 (2009) - 2008
- [j6]E. Purdom, Ken M. Simpson, Mark D. Robinson, J. G. Conboy, A. V. Lapuk, Terence P. Speed:
FIRMA: a method for detection of alternative splicing from exon array data. Bioinform. 24(15): 1707-1714 (2008) - 2007
- [j5]Mark D. Robinson, Gordon K. Smyth:
Moderated statistical tests for assessing differences in tag abundance. Bioinform. 23(21): 2881-2887 (2007) - [j4]Mark D. Robinson, Terence P. Speed:
A comparison of Affymetrix gene expression arrays. BMC Bioinform. 8 (2007) - [j3]Mark D. Robinson, David P. De Souza, Woon Wai Keen, Eleanor C. Saunders, Malcolm J. McConville, Terence P. Speed, Vladimir A. Likic:
A dynamic programming approach for the alignment of signal peaks in multiple gas chromatography-mass spectrometry experiments. BMC Bioinform. 8 (2007) - 2005
- [c1]Brendan J. Frey, Quaid Morris, Mark D. Robinson, Timothy R. Hughes:
Finding Novel Transcripts in High-Resolution Genome-Wide Microarray Data Using the GenRate Model. RECOMB 2005: 66-82 - 2004
- [j2]Kimberly N. Lewis, Mark D. Robinson, Timothy R. Hughes, Christopher W. V. Hogue:
MyMed: A database system for biomedical research on MEDLINE data. IBM Syst. J. 43(4): 756- (2004) - 2002
- [j1]Mark D. Robinson, Jörg Grigull, Naveed Mohammad, Timothy R. Hughes:
FunSpec: a web-based cluster interpreter for yeast. BMC Bioinform. 3: 35 (2002)
Coauthor Index
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