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ORCIDShoshana J. Wodak
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2020 – today
- 2021
[j22]Vaishali P. Waman, Neeladri Sen
, Mihaly Varadi, Antoine Daina, Shoshana J. Wodak, Vincent Zoete, Sameer Velankar, Christine A. Orengo:
The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies. Briefings Bioinform. 22(2): 742-768 (2021)
2010 – 2019
- 2018
- [j21]Daniel Mietchen, Shoshana J. Wodak, Szymon Wasik, Natalia Szostak, Christophe Dessimoz:
Submit a Topic Page to PLOS Computational Biology and Wikipedia. PLoS Comput. Biol. 14(5) (2018) - 2012
- [j20]Marc Fiume, Eric J. M. Smith, Andrew Brook, Dario Strbenac, Brian Turner, Aziz M. Mezlini, Mark D. Robinson, Shoshana J. Wodak, Michael Brudno:
Savant Genome Browser 2: visualization and analysis for population-scale genomics. Nucleic Acids Res. 40(Web-Server-Issue): 615-621 (2012) - [j19]Shoshana J. Wodak, Daniel Mietchen, Andrew M. Collings, Robert B. Russell, Philip E. Bourne:
Topic Pages: PLoS Computational Biology Meets Wikipedia. PLoS Comput. Biol. 8(3) (2012) - 2011
- [j18]Yanqi Hao, Anna Merkoulovitch, James Vlasblom, Shuye Pu, Andrei L. Turinsky, Denitza Roudeva, Brian Turner, Jack Greenblatt, Shoshana J. Wodak:
OrthoNets: simultaneous visual analysis of orthologs and their interaction neighborhoods across different organisms. Bioinform. 27(6): 883-884 (2011) - [j17]Andrei L. Turinsky, Brian Turner, Rosanne C. Borja, James A. Gleeson, Michael Heath, Shuye Pu, Thomas Switzer, Dong Dong, Yunchen Gong, Tuan On, Xuejian Xiong, Andrew Emili, Jack Greenblatt, John Parkinson, Zhaolei Zhang, Shoshana J. Wodak:
DAnCER: Disease-Annotated Chromatin Epigenetics Resource. Nucleic Acids Res. 39(Database-Issue): 889-894 (2011) - 2010
- [j16]Andrei L. Turinsky, Sabry Razick, Brian Turner, Ian M. Donaldson, Shoshana J. Wodak:
Literature curation of protein interactions: measuring agreement across major public databases. Database J. Biol. Databases Curation 2010 (2010) - [j15]Brian Turner, Sabry Razick, Andrei L. Turinsky, James Vlasblom, Edgard K. Crowdy, Emerson Cho, Kyle Morrison, Ian M. Donaldson, Shoshana J. Wodak:
iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence. Database J. Biol. Databases Curation 2010 (2010)
2000 – 2009
- 2009
- [j14]James Vlasblom, Shoshana J. Wodak:
Markov clustering versus affinity propagation for the partitioning of protein interaction graphs. BMC Bioinform. 10 (2009) - 2008
- [j13]Shuye Pu, Karen Ronen, James Vlasblom, Jack Greenblatt, Shoshana J. Wodak:
Local coherence in genetic interaction patterns reveals prevalent functional versatility. Bioinform. 24(20): 2376-2383 (2008) - [j12]Benoit H. Dessailly, Marc F. Lensink, Christine A. Orengo, Shoshana J. Wodak:
LigASite - a database of biologically relevant binding sites in proteins with known apo-structures. Nucleic Acids Res. 36(Database-Issue): 667-673 (2008) - 2007
- [j11]Benoit H. Dessailly, Marc F. Lensink, Shoshana J. Wodak:
Relating destabilizing regions to known functional sites in proteins. BMC Bioinform. 8 (2007) - [j10]Guillaume Launay, Raul Mendez, Shoshana J. Wodak, Thomas Simonson:
Recognizing protein-protein interfaces with empirical potentials and reduced amino acid alphabets. BMC Bioinform. 8 (2007) - 2006
- [j9]James Vlasblom, Samuel Wu, Shuye Pu, Mark Superina, Gina Liu, Chris Orsi, Shoshana J. Wodak:
GenePro: a cytoscape plug-in for advanced visualization and analysis of interaction networks. Bioinform. 22(17): 2178-2179 (2006) - 2005
- [j8]Ulrich Güldener, Martin Münsterkötter, Gabi Kastenmüller, Normann Strack, Jacques van Helden, Christian Lemer, J. Richelles, Shoshana J. Wodak, J. García-Martínez, José E. Pérez-Ortín, Holger Michael, Andreas Kaps, E. Talla, Bernard Dujon, Bruno André, J. L. Souciet, J. De Montigny, E. Bon, C. Gaillardin, Hans-Werner Mewes:
CYGD: the Comprehensive Yeast Genome Database. Nucleic Acids Res. 33(Database-Issue): 364-368 (2005) - [j7]Didier Croes, Fabian Couche, Shoshana J. Wodak, Jacques van Helden:
Metabolic PathFinding: inferring relevant pathways in biochemical networks. Nucleic Acids Res. 33(Web-Server-Issue): 326-330 (2005) - 2004
- [j6]Nicolas Simonis, Shoshana J. Wodak, G. N. Cohen, Jacques van Helden:
Combining pattern discovery and discriminant analysis to predict gene co-regulation. Bioinform. 20(15): 2370-2379 (2004) - [j5]Raphaël Leplae, Aline Hebrant, Shoshana J. Wodak, Ariane Toussaint:
ACLAME: A CLAssification of Mobile genetic Elements. Nucleic Acids Res. 32(Database-Issue): 45-49 (2004) - [j4]Christian Lemer, Erick Antezana, Fabian Couche, Frédéric Fays, Xavier Santolaria, Rekin's Janky, Yves Deville, Jean Richelle, Shoshana J. Wodak:
The aMAZE LightBench: a web interface to a relational database of cellular processes. Nucleic Acids Res. 32(Database-Issue): 443-448 (2004) - 2003
- [j3]Yves Deville, David R. Gilbert, Jacques van Helden, Shoshana J. Wodak:
An overview of data models for the analysis of biochemical pathways. Briefings Bioinform. 4(3): 246-259 (2003) - [c4]Yves Deville, David R. Gilbert, Jacques van Helden, Shoshana J. Wodak:
An Overview of Data Models for the Analysis of Biochemical Pathways. CMSB 2003: 174 - 2002
- [j2]Maria Elena Ochagavía, Jean Richelle, Shoshana J. Wodak:
Advanced pairwise structure alignments of proteins and analysis of conformational changes. Bioinform. 18(4): 637-640 (2002) - 2001
- [j1]Jacques van Helden, Avi Naim, Christian Lemer, Renato Mancuso, Matthew D. Eldridge, Shoshana J. Wodak:
From Molecular Activities and Processes to Biological Function. Briefings Bioinform. 2(1): 81-107 (2001) - 2000
- [c3]Jacques van Helden, David R. Gilbert, Lorenz Wernisch, Michael Schroeder, Shoshana J. Wodak:
Application of Regulatory Sequence Analysis and Metabolic Network Analysis to the Interpretation of Gene Expression Data. JOBIM 2000: 147-164
1990 – 1999
- 1999
- [c2]Jacques van Helden, David R. Gilbert, Lorenz Wernisch, Renato Mancuso, Matthew D. Eldridge, Kirill Degtyarenko, Shoshana J. Wodak:
Logical Tools for Quering and Assisting Annotation of a Biochemical Pathway Database. German Conference on Bioinformatics 1999: 227-229 - 1997
- [c1]Shoshana J. Wodak:
Molecular Systematics in Three Dimensions. German Conference on Bioinformatics 1997: 21 - 1995
- [e1]Christopher J. Rawlings, Dominic A. Clark, Russ B. Altman, Lawrence Hunter, Thomas Lengauer, Shoshana J. Wodak:
Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, Cambridge, United Kingdom, July 16-19, 1995. AAAI 1995, ISBN 0-929280-83-0 [contents]
Coauthor Index
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