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ORCIDGordon K. Smyth
Person information
- affiliation: University of Melbourne, Australia
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2020 – today
- 2023
[j25]Mengbo Li
, Gordon K. Smyth:
Neither random nor censored: estimating intensity-dependent probabilities for missing values in label-free proteomics. Bioinform. 39(5) (2023)
2010 – 2019
- 2017
- [i2]Yunshun Chen, Bhupinder Pal, Jane E. Visvader, Gordon K. Smyth:
Differential methylation analysis of reduced representation bisulfite sequencing experiments using edgeR. F1000Research 6: 2055- (2017) - 2016
- [j24]Göknur Giner, Gordon K. Smyth:
statmod: Probability Calculations for the Inverse Gaussian Distribution. R J. 8(1): 339 (2016) - [p1]Aaron T. L. Lun, Yunshun Chen, Gordon K. Smyth:
It's DE-licious: A Recipe for Differential Expression Analyses of RNA-seq Experiments Using Quasi-Likelihood Methods in edgeR. Statistical Genomics 2016: 391-416 - [i1]Yunshun Chen, Aaron T. L. Lun, Gordon K. Smyth:
From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline. F1000Research 5: 1438 (2016) - 2015
- [j23]Aaron T. L. Lun, Gordon K. Smyth:
diffHic: a Bioconductor package to detect differential genomic interactions in Hi-C data. BMC Bioinform. 16: 258:1-258:11 (2015) - 2014
- [j22]Yang Liao, Gordon K. Smyth, Wei Shi:
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinform. 30(7): 923-930 (2014) - 2013
- [j21]Gordon K. Smyth, Naomi S. Altman:
Separate-channel analysis of two-channel microarrays: recovering inter-spot information. BMC Bioinform. 14: 165 (2013) - 2010
- [j20]Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth:
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinform. 26(1): 139-140 (2010) - [j19]Di Wu, Elgene Lim, François Vaillant, Marie-Liesse Asselin-Labat, Jane E. Visvader, Gordon K. Smyth:
ROAST: rotation gene set tests for complex microarray experiments. Bioinform. 26(17): 2176-2182 (2010)
2000 – 2009
- 2009
- [j18]Davis J. McCarthy, Gordon K. Smyth:
Testing significance relative to a fold-change threshold is a TREAT. Bioinform. 25(6): 765-771 (2009) - [j17]Wei Shi, Ashish Banerjee, Matthew E. Ritchie, Steve Gerondakis, Gordon K. Smyth:
Illumina WG-6 BeadChip strips should be normalized separately. BMC Bioinform. 10: 372 (2009) - 2008
- [j16]Peter K. Dunn, Gordon K. Smyth:
Evaluation of Tweedie exponential dispersion model densities by Fourier inversion. Stat. Comput. 18(1): 73-86 (2008) - 2007
- [j15]Alicia Oshlack, Adrien E. Chabot, Gordon K. Smyth, Yoav Gilad:
Using DNA microarrays to study gene expression in closely related species. Bioinform. 23(10): 1235-1242 (2007) - [j14]Matthew E. Ritchie, Jeremy David Silver, Alicia Oshlack, Melissa Holmes, Dileepa S. Diyagama, Andrew J. Holloway, Gordon K. Smyth:
A comparison of background correction methods for two-colour microarrays. Bioinform. 23(20): 2700-2707 (2007) - [j13]Mark D. Robinson, Gordon K. Smyth:
Moderated statistical tests for assessing differences in tag abundance. Bioinform. 23(21): 2881-2887 (2007) - 2006
- [j12]James M. Wettenhall, Ken M. Simpson, Keith Satterley, Gordon K. Smyth:
affylmGUI: a graphical user interface for linear modeling of single channel microarray data. Bioinform. 22(7): 897-899 (2006) - [j11]Matthew E. Ritchie, Dileepa S. Diyagama, Jody Neilson, Ryan van Laar, Alexander Dobrovic, Andrew J. Holloway, Gordon K. Smyth:
Empirical array quality weights in the analysis of microarray data. BMC Bioinform. 7: 261 (2006) - [j10]Andrew J. Holloway, Alicia Oshlack, Dileepa S. Diyagama, David D. L. Bowtell, Gordon K. Smyth:
Statistical analysis of an RNA titration series evaluates microarray precision and sensitivity on a whole-array basis. BMC Bioinform. 7: 511 (2006) - 2005
- [j9]Gordon K. Smyth, Joëlle Michaud, Hamish S. Scott:
Use of within-array replicate spots for assessing differential expression in microarray experiments. Bioinform. 21(9): 2067-2075 (2005) - [j8]Peter K. Dunn, Gordon K. Smyth:
Series evaluation of Tweedie exponential dispersion model densities. Stat. Comput. 15(4): 267-280 (2005) - [c1]Tim Beißbarth, Jason A. Tye-Din, Gordon K. Smyth, Terence P. Speed, Robert P. Anderson:
A systematic approach for comprehensive T-cell epitope discovery using peptide libraries. ISMB (Supplement of Bioinformatics) 2005: 29-37 - 2004
- [j7]James M. Wettenhall, Gordon K. Smyth:
limmaGUI: A graphical user interface for linear modeling of microarray data. Bioinform. 20(18): 3705-3706 (2004) - [j6]Heather M. Podlich, Malcolm J. Faddy, Gordon K. Smyth:
Semi-parametric extended Poisson process models for count data. Stat. Comput. 14(4): 311-321 (2004) - 2002
- [j5]Gordon K. Smyth, Heather M. Podlich:
An Improved Saddlepoint Approximation Based on the Negative Binomial Distribution for the General Birth Process. Comput. Stat. 17(1): 17-28 (2002) - 2000
- [j4]Gordon K. Smyth:
Employing Symmetry Constraints for Improved Frequency Estimation by Eigenanalysis Methods. Technometrics 42(3): 277-289 (2000)
1990 – 1999
- 1996
- [j3]Gordon K. Smyth:
Partitioned algorithms for maximum likelihood and other non-linear estimation. Stat. Comput. 6(3): 201-216 (1996) - 1995
- [j2]Michael R. Osborne, Gordon K. Smyth:
A Modified Prony Algorithm for Exponential Function Fitting. SIAM J. Sci. Comput. 16(1): 119-138 (1995) - 1991
- [j1]Michael R. Osborne, Gordon K. Smyth:
A Modified Prony Algorithm for Fitting Functions Defined by Difference Equations. SIAM J. Sci. Comput. 12(2): 362-382 (1991)
Coauthor Index
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