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ORCIDStatistical Genomics, 2016
- Ewy A. Mathé, Sean R. Davis:
Statistical Genomics - Methods and Protocols. Methods in Molecular Biology 1418, Springer 2016, ISBN 978-1-4939-3576-5 - Hongen Zhang:
Overview of Sequence Data Formats. 3-17 - Chen Meng
, Aedín C. Culhane:
Integrative Exploratory Analysis of Two or More Genomic Datasets. 19-38 - Loren A. Honaas, Naomi S. Altman, Martin Krzywinski:
Study Design for Sequencing Studies. 39-66 - Marc Carlson, Hervé Pagès, Sonali Arora, Valerie Obenchain, Martin Morgan:
Genomic Annotation Resources in R/Bioconductor. 67-90 - Emily Clough, Tanya Barrett:
The Gene Expression Omnibus Database. 93-110 - Zhining Wang, Mark A. Jensen, Jean-Claude Zenklusen:
A Practical Guide to The Cancer Genome Atlas (TCGA). 111-141 - Benilton S. Carvalho:
Working with Oligonucleotide Arrays. 145-159 - Levi Waldron, Markus Riester:
Meta-Analysis in Gene Expression Studies. 161-176 - Mark A. Carty, Olivier Elemento:
Practical Analysis of Genome Contact Interaction Experiments. 177-189 - Matthias Lienhard, Lukas Chavez:
Quantitative Comparison of Large-Scale DNA Enrichment Sequencing Data. 191-208 - Nancy F. Hansen:
Variant Calling From Next Generation Sequence Data. 209-224 - Songjoon Baek, Myong-Hee Sung:
Genome-Scale Analysis of Cell-Specific Regulatory Codes Using Nuclear Enzymes. 225-240 - Marco-Antonio Mendoza-Parra, Mohamed-Ashick M. Saleem, Matthias Blum, Pierre-Etienne Cholley, Hinrich Gronemeyer:
NGS-QC Generator: A Quality Control System for ChIP-Seq and Related Deep Sequencing-Generated Datasets. 243-265 - Shane J. Neph, Alex P. Reynolds, Scott Kuehn, John A. Stamatoyannopoulos:
Operating on Genomic Ranges Using BEDOPS. 267-281 - Thomas D. Wu, Jens Reeder, Michael Lawrence, Gabe Becker, Matthew J. Brauer:
GMAP and GSNAP for Genomic Sequence Alignment: Enhancements to Speed, Accuracy, and Functionality. 283-334 - Florian Hahne, Robert Ivanek:
Visualizing Genomic Data Using Gviz and Bioconductor. 335-351 - Tony C. Smith, Eibe Frank:
Introducing Machine Learning Concepts with WEKA. 353-378 - Zhijin Wu, Hao Wu:
Experimental Design and Power Calculation for RNA-seq Experiments. 379-390 - Aaron T. L. Lun, Yunshun Chen, Gordon K. Smyth:
It's DE-licious: A Recipe for Differential Expression Analyses of RNA-seq Experiments Using Quasi-Likelihood Methods in edgeR. 391-416
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