default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDDick de Ridder
Person information
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
showing all ?? records
2020 – today
- 2022
[j46]Eef M. Jonkheer
, Dirk-Jan M. van Workum, Siavash Sheikhizadeh Anari, Balázs Brankovics, Jorn R. de Haan, Lidija Berke, Theo A. J. van der Lee, Dick de Ridder, Sandra Smit:
PanTools v3: functional annotation, classification and phylogenomics. Bioinform. 38(18): 4403-4405 (2022)- [j45]Aalt D. J. van Dijk, Shin-Han Shiu, Dick de Ridder:
Editorial: Artificial Intelligence and Machine Learning Applications in Plant Genomics and Genetics. Frontiers Artif. Intell. 5 (2022) - 2021
- [j44]Janani Durairaj, Elena Melillo, Harro J. Bouwmeester, Jules Beekwilder, Dick de Ridder, Aalt D. J. van Dijk:
Integrating structure-based machine learning and co-evolution to investigate specificity in plant sesquiterpene synthases. PLoS Comput. Biol. 17(3) (2021) - 2020
- [j43]Basten L. Snoek, Mark G. Sterken, Margi Hartanto, Albert-Jan van Zuilichem, Jan E. Kammenga, Dick de Ridder, Harm Nijveen:
WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans. Database J. Biol. Databases Curation 2020: baz149 (2020) - [j42]Sina Majidian, Mohammad Hossein Kahaei, Dick de Ridder:
Hap10: reconstructing accurate and long polyploid haplotypes using linked reads. BMC Bioinform. 21(1): 253 (2020)
2010 – 2019
- 2019
- [j41]Miguel Correa Marrero, Richard G. H. Immink, Dick de Ridder, Aalt D. J. van Dijk:
Improved inference of intermolecular contacts through protein-protein interaction prediction using coevolutionary analysis. Bioinform. 35(12): 2036-2042 (2019) - [j40]Carlos de Lannoy, Judith Risse, Dick de Ridder:
poreTally: run and publish de novo nanopore assembler benchmarks. Bioinform. 35(15): 2663-2664 (2019) - [j39]Rens Holmer, Robin van Velzen, René Geurts, Ton Bisseling, Dick de Ridder, Sandra Smit:
GeneNoteBook, a collaborative notebook for comparative genomics. Bioinform. 35(22): 4779-4781 (2019) - 2018
- [j38]Ehsan Motazedi, Richard Finkers, Chris Maliepaard, Dick de Ridder:
Exploiting next-generation sequencing to solve the haplotyping puzzle in polyploids: a simulation study. Briefings Bioinform. 19(3): 387-403 (2018) - [j37]Ehsan Motazedi, Dick de Ridder, Richard Finkers, Samantha J. Baldwin, Susan Thomson, Katrina Monaghan, Chris Maliepaard:
TriPoly: haplotype estimation for polyploids using sequencing data of related individuals. Bioinform. 34(22): 3864-3872 (2018) - [j36]Siavash Sheikhizadeh, Dick de Ridder, M. Eric Schranz, Sandra Smit:
Efficient inference of homologs in large eukaryotic pan-proteomes. BMC Bioinform. 19(1): 340:1-340:11 (2018) - 2017
- [j35]Alexey A. Gritsenko, Shira Weingarten-Gabbay, Shani Elias-Kirma, Ronit Nir, Dick de Ridder, Eran Segal:
Sequence features of viral and human Internal Ribosome Entry Sites predictive of their activity. PLoS Comput. Biol. 13(9) (2017) - 2016
- [j34]Siavash Sheikhizadeh, M. Eric Schranz, Mehmet Akdel, Dick de Ridder, Sandra Smit:
PanTools: representation, storage and exploration of pan-genomic data. Bioinform. 32(17): 487-493 (2016) - [j33]Aalt D. J. van Dijk, Harri Lähdesmäki, Dick de Ridder, Juho Rousu:
Selected proceedings of Machine Learning in Systems Biology: MLSB 2016. BMC Bioinform. 17(S-16): 51-52 (2016) - [i1]Maria Cecília D. Costa, Thijs Slijkhuis, Wilco Ligterink, Henk W. M. Hilhorst, Dick de Ridder, Harm Nijveen:
CyLineUp: A Cytoscape app for visualizing data in network small multiples. F1000Research 5: 635 (2016) - 2015
- [j32]Ke Lin, Sandra Smit, Guusje Bonnema, Gabino Sanchez-Perez, Dick de Ridder:
Making the difference: integrating structural variation detection tools. Briefings Bioinform. 16(5): 852-864 (2015) - [j31]Siavash Sheikhizadeh, Dick de Ridder:
ACE: accurate correction of errors using K-mer tries. Bioinform. 31(19): 3216-3218 (2015) - [j30]Saulo Aflitos, Edouard Severing, Gabino Sanchez-Perez, Sander Peters, Hans de Jong, Dick de Ridder:
Cnidaria: fast, reference-free clustering of raw and assembled genome and transcriptome NGS data. BMC Bioinform. 16: 352:1-352:10 (2015) - [j29]Alexey A. Gritsenko, Marc Hulsman, Marcel J. T. Reinders, Dick de Ridder:
Unbiased Quantitative Models of Protein Translation Derived from Ribosome Profiling Data. PLoS Comput. Biol. 11(8) (2015) - 2014
- [j28]Bastiaan A. van den Berg, Marcel J. T. Reinders, Johannes A. Roubos, Dick de Ridder:
SPiCE: a web-based tool for sequence-based protein classification and exploration. BMC Bioinform. 15: 93 (2014) - 2013
- [j27]Dick de Ridder, Jeroen de Ridder, Marcel J. T. Reinders:
Pattern recognition in bioinformatics. Briefings Bioinform. 14(5): 633-647 (2013) - [j26]Jurgen F. Nijkamp, Mihai Pop, Marcel J. T. Reinders, Dick de Ridder:
Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold. Bioinform. 29(22): 2826-2834 (2013) - [j25]Wynand Winterbach, Piet Van Mieghem, Marcel J. T. Reinders, Huijuan Wang, Dick de Ridder:
Topology of molecular interaction networks. BMC Syst. Biol. 7: 90 (2013) - [j24]Rogier J. P. van Berlo, Wynand Winterbach, Marco J. L. de Groot, Andreas Bender, Peter J. T. Verheijen, Marcel J. T. Reinders, Dick de Ridder:
Efficient calculation of compound similarity based on maximum common subgraphs and its application to prediction of gene transcript levels. Int. J. Bioinform. Res. Appl. 9(4): 407-432 (2013) - [c20]Wynand Winterbach, Piet Van Mieghem, Marcel J. T. Reinders, Huijuan Wang, Dick de Ridder:
Local Topological Signatures for Network-Based Prediction of Biological Function. PRIB 2013: 23-34 - [c19]Alexey A. Gritsenko, Marcel J. T. Reinders, Dick de Ridder:
Using Predictive Models to Engineer Biology: A Case Study in Codon Optimization. PRIB 2013: 159-171 - [c18]Thies Gehrmann, Marco Loog, Marcel J. T. Reinders, Dick de Ridder:
Conditional Random Fields for Protein Function Prediction. PRIB 2013: 184-195 - 2012
- [j23]Alexey A. Gritsenko, Jurgen F. Nijkamp, Marcel J. T. Reinders, Dick de Ridder:
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies. Bioinform. 28(11): 1429-1437 (2012) - [j22]Jurgen F. Nijkamp, Marcel van den Broek, Jan-Maarten A. Geertman, Marcel J. T. Reinders, Jean-Marc Daran, Dick de Ridder:
De novo detection of copy number variation by co-assembly. Bioinform. 28(24): 3195-3202 (2012) - 2011
- [j21]Wynand Winterbach, Huijuan Wang, Marcel J. T. Reinders, Piet Van Mieghem, Dick de Ridder:
Metabolic network destruction: Relating topology to robustness. Nano Commun. Networks 2(2-3): 88-98 (2011) - [j20]Rogier J. P. van Berlo, Dick de Ridder, Jean-Marc Daran, Pascale A. S. Daran-Lapujade, Bas Teusink, Marcel J. T. Reinders:
Predicting Metabolic Fluxes Using Gene Expression Differences As Constraints. IEEE ACM Trans. Comput. Biol. Bioinform. 8(1): 206-216 (2011) - [e4]Marco Loog, Lodewyk F. A. Wessels, Marcel J. T. Reinders, Dick de Ridder:
Pattern Recognition in Bioinformatics - 6th IAPR International Conference, PRIB 2011, Delft, The Netherlands, November 2-4, 2011. Proceedings. Lecture Notes in Computer Science 7036, Springer 2011, ISBN 978-3-642-24854-2 [contents] - 2010
- [j19]Jurgen F. Nijkamp, Wynand Winterbach, Marcel van den Broek, Jean-Marc Daran, Marcel J. T. Reinders, Dick de Ridder:
Integrating genome assemblies with MAIA. Bioinform. 26(18) (2010) - [c17]Bastiaan A. van den Berg, Jurgen F. Nijkamp, Marcel J. T. Reinders, Liang Wu, Herman J. Pel, Johannes A. Roubos, Dick de Ridder:
Sequence-Based Prediction of Protein Secretion Success in Aspergillus niger. PRIB 2010: 3-14
2000 – 2009
- 2009
- [j18]Marco J. L. de Groot, Rogier J. P. van Berlo, Wouter A. van Winden, Peter J. T. Verheijen, Marcel J. T. Reinders, Dick de Ridder:
Metabolite and reaction inference based on enzyme specificities. Bioinform. 25(22): 2975-2982 (2009) - [j17]Peter van Nes, Domenico Bellomo, Marcel J. T. Reinders, Dick de Ridder:
Stability from Structure: Metabolic Networks Are Unlike Other Biological Networks. EURASIP J. Bioinform. Syst. Biol. 2009 (2009) - [j16]Marc Hulsman, Marcel J. T. Reinders, Dick de Ridder:
Evolutionary Optimization of Kernel Weights Improves Protein Complex Comembership Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 6(3): 427-437 (2009) - 2008
- [j15]Yunlei Li, Dick de Ridder, Marco J. L. de Groot, Marcel J. T. Reinders:
Metabolic pathway alignment between species using a comprehensive and flexible similarity measure. BMC Syst. Biol. 2: 111 (2008) - [j14]Yunlei Li, Dick de Ridder, Robert P. W. Duin, Marcel J. T. Reinders:
Integration of prior knowledge of measurement noise in kernel density classification. Pattern Recognit. 41(1): 320-330 (2008) - [j13]Yunlei Li, Lodewyk F. A. Wessels, Dick de Ridder, Marcel J. T. Reinders:
Erratum to "Classification in the presence of class noise using a probabilistic kernel fisher method": [Pattern Recognition 40 (12) 3349-3357]. Pattern Recognit. 41(3): 1214 (2008) - [c16]Yunlei Li, Dick de Ridder, Marco J. L. de Groot, Marcel J. T. Reinders:
Metabolic Pathway Alignment (M-Pal) Reveals Diversity and Alternatives in Conserved Networks. APBC 2008: 273-286 - [c15]Domenico Bellomo, Peter van Nes, Marcel J. T. Reinders, Dick de Ridder:
Stability cannot be derived from local structure in biochemical networks. BIONETICS 2008: 3 - 2007
- [j12]Rogier J. P. van Berlo, Lodewyk F. A. Wessels, Dick de Ridder, Marcel J. T. Reinders:
Protein Complex Prediction Using an Integrative Bioinformatics Approach. J. Bioinform. Comput. Biol. 5(4): 839-864 (2007) - [j11]Yunlei Li, Lodewyk F. A. Wessels, Dick de Ridder, Marcel J. T. Reinders:
Classification in the presence of class noise using a probabilistic Kernel Fisher method. Pattern Recognit. 40(12): 3349-3357 (2007) - 2006
- [j10]Dick de Ridder, Frank J. T. Staal, Jacques J. M. van Dongen, Marcel J. T. Reinders:
Maximum significance clustering of oligonucleotide microarrays. Bioinform. 22(3): 326-331 (2006) - [j9]Roel G. W. Verhaak, Frank J. T. Staal, Peter J. M. Valk, Bob Löwenberg, Marcel J. T. Reinders, Dick de Ridder:
The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies. BMC Bioinform. 7: 105 (2006) - [c14]Marco Loog, Dick de Ridder:
Local Discriminant Analysis. ICPR (3) 2006: 328-331 - [e3]Dit-Yan Yeung, James T. Kwok, Ana L. N. Fred, Fabio Roli, Dick de Ridder:
Structural, Syntactic, and Statistical Pattern Recognition, Joint IAPR International Workshops, SSPR 2006 and SPR 2006, Hong Kong, China, August 17-19, 2006, Proceedings. Lecture Notes in Computer Science 4109, Springer 2006, ISBN 3-540-37236-9 [contents] - 2005
- [c13]Dick de Ridder, Marcel J. T. Reinders, Frank J. T. Staal, Jacques J. M. van Dongen:
Maximum signi.cance clustering of oligonucleotide microarrays. CSB Workshops 2005: 93-94 - 2004
- [j8]Mohamed E. M. Musa, Dick de Ridder, Robert P. W. Duin, Volkan Atalay:
Almost autonomous training of mixtures of principal component analyzers. Pattern Recognit. Lett. 25(9): 1085-1095 (2004) - [c12]Dick de Ridder, Marco Loog, Marcel J. T. Reinders:
Local Fisher Embedding. ICPR (2) 2004: 295-298 - [e2]Ana L. N. Fred, Terry Caelli, Robert P. W. Duin, Aurélio C. Campilho, Dick de Ridder:
Structural, Syntactic, and Statistical Pattern Recognition, Joint IAPR International Workshops, SSPR 2004 and SPR 2004, Lisbon, Portugal, August 18-20, 2004 Proceedings. Lecture Notes in Computer Science 3138, Springer 2004, ISBN 3-540-22570-6 [contents] - 2003
- [c11]Dick de Ridder, Vojtech Franc:
Robust subspace mixture models using t-distributions. BMVC 2003: 1-10 - [c10]Dick de Ridder, Olga Kouropteva, Oleg Okun, Matti Pietikäinen, Robert P. W. Duin:
Supervised Locally Linear Embedding. ICANN 2003: 333-341 - [c9]Mohamed E. M. Musa, Robert P. W. Duin, Dick de Ridder, Volkan Atalay:
Texture Segmentation Using the Mixtures of Principal Component Analyzers. ISCIS 2003: 505-512 - 2002
- [j7]Michael Egmont-Petersen, Dick de Ridder, Heinz Handels:
Image processing with neural networks - a review. Pattern Recognit. 35(10): 2279-2301 (2002) - [j6]Robert P. W. Duin, Fabio Roli, Dick de Ridder:
A note on core research issues for statistical pattern recognition. Pattern Recognit. Lett. 23(4): 493-499 (2002) - [c8]Dick de Ridder, Elzbieta Pekalska, Robert P. W. Duin:
The Economics of Classification: Error vs. Complexity. ICPR (2) 2002: 244-247 - [c7]Dick de Ridder, Robert P. W. Duin, Josef Kittler:
Texture Description by Independent Components. SSPR/SPR 2002: 587-596 - [e1]Terry Caelli, Adnan Amin, Robert P. W. Duin, Mohamed S. Kamel, Dick de Ridder:
Structural, Syntactic, and Statistical Pattern Recognition, Joint IAPR International Workshops SSPR 2002 and SPR 2002, Windsor, Ontario, Canada, August 6-9, 2002, Proceedings. Lecture Notes in Computer Science 2396, Springer 2002, ISBN 3-540-44011-9 [contents] - 2000
- [c6]Dick de Ridder, Josef Kittler, Robert P. W. Duin:
Probabilistic PCA and ICA Subspace Mixture Models for Image Segmentation. BMVC 2000: 1-10 - [c5]Dick de Ridder, Josef Kittler, Olaf Lemmers, Robert P. W. Duin:
The Adaptive Subspace Map for Texture Segmentation. ICPR 2000: 1216-1220 - [c4]Dick de Ridder, Olaf Lemmers, Robert P. W. Duin, Josef Kittler:
The Adaptive Subspace Map for Image Description and Image Database Retrieval. SSPR/SPR 2000: 94-103
1990 – 1999
- 1999
- [j5]Dick de Ridder, Robert P. W. Duin, Piet W. Verbeek:
The Applicability of Neural Networks to Non-linear Image Processing. Pattern Anal. Appl. 2(2): 111-128 (1999) - [j4]Robert P. W. Duin, Elzbieta Pekalska, Dick de Ridder:
Relational discriminant analysis. Pattern Recognit. Lett. 20(11-13): 1175-1181 (1999) - [c3]Kieron Messer, Dick de Ridder, Josef Kittler:
Adaptive Texture Representation Methods for Automatic Target Recognition. BMVC 1999: 1-10 - 1998
- [j3]Robert P. W. Duin, Dick de Ridder, David M. J. Tax:
Featureless pattern classification. Kybernetika 34(4): 399-404 (1998) - [c2]Dick de Ridder, Robert P. W. Duin, Piet W. Verbeek, Lucas J. van Vliet:
On the Application of Neural Networks to Non-Linear Image Processing Tasks. ICONIP 1998: 161-165 - 1997
- [j2]Robert P. W. Duin, Dick de Ridder, David M. J. Tax:
Experiments with a featureless approach to pattern recognition. Pattern Recognit. Lett. 18(11-13): 1159-1166 (1997) - [j1]Dick de Ridder, Robert P. W. Duin:
Sammon's mapping using neural networks: A comparison. Pattern Recognit. Lett. 18(11-13): 1307-1316 (1997) - [c1]Robert P. W. Duin, Dick de Ridder:
Neural network experiences between perceptrons and support vectors. BMVC 1997
Coauthor Index
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from 
to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the 
of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from 
, 
, and 
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from 
.
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-09-22 00:37 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
