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ORCIDSteven M. Gallo
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- affiliation: State University of New York, University at Buffalo, NY, USA
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Journal Articles
- 2021
[j14]Alan Chalker
, Eric Franz, Morgan E. Rodgers, Trey Dockendorf, Doug Johnson, Doris Sajdak, Joseph P. White, Benjamin D. Plessinger, Mohammad Zia, Steven M. Gallo, Robert E. Settlage, David E. Hudak:
Open OnDemand: State of the platform, project, and the future. Concurr. Comput. Pract. Exp. 33(19) (2021)- 2019
- [j13]Jeanette M. Sperhac, Steven M. Gallo:
VIDIA: A HUBzero gateway for data analytics education. Future Gener. Comput. Syst. 94: 833-840 (2019) - [j12]Jeanette M. Sperhac, Robert L. DeLeon, Thomas R. Furlani, Steven M. Gallo, Martins Innus, Matthew D. Jones, Jeffrey T. Palmer, Abani K. Patra, Benjamin D. Plessinger, Ryan Rathsam, Nikolay Simakov, Joseph P. White, Rudra Chakraborty, Gregary Dean:
Managing computational gateway resources with XDMoD. Future Gener. Comput. Syst. 98: 154-166 (2019) - [j11]John Rivera, Soile V. E. Keränen, Steven M. Gallo, Marc S. Halfon:
REDfly: the transcriptional regulatory element database for Drosophila. Nucleic Acids Res. 47(Database-Issue): D828-D834 (2019) - 2016
- [j10]Biao Liu, Jessica L. Childs-Disney, Brent M. Znosko, Dan Wang, Mohammad Fallahi, Steven M. Gallo, Matthew D. Disney:
Analysis of secondary structural elements in human microRNA hairpin precursors. BMC Bioinform. 17: 112 (2016) - 2015
- [j9]Nikolay A. Simakov, Joseph P. White, Robert L. DeLeon, Amin Ghadersohi, Thomas R. Furlani, Matthew D. Jones, Steven M. Gallo, Abani K. Patra:
Application kernels: HPC resources performance monitoring and variance analysis. Concurr. Comput. Pract. Exp. 27(17): 5238-5260 (2015) - [j8]Jeffrey T. Palmer, Steven M. Gallo, Thomas R. Furlani, Matthew D. Jones, Robert L. DeLeon, Joseph P. White, Nikolay Simakov, Abani K. Patra, Jeanette M. Sperhac, Thomas Yearke, Ryan Rathsam, Martins Innus, Cynthia D. Cornelius, James C. Browne, William L. Barth, Richard Todd Evans:
Open XDMoD: A Tool for the Comprehensive Management of High-Performance Computing Resources. Comput. Sci. Eng. 17(4): 52-62 (2015) - 2014
- [j7]James C. Browne, Robert L. DeLeon, Abani K. Patra, William L. Barth, John L. Hammond, Matthew D. Jones, Thomas R. Furlani, Barry I. Schneider, Steven M. Gallo, Amin Ghadersohi, Ryan J. Gentner, Jeffrey T. Palmer, Nikolay Simakov, Martins Innus, Andrew E. Bruno, Joseph P. White, Cynthia D. Cornelius, Thomas Yearke, Kyle Marcus, Gregor von Laszewski, Fugang Wang:
Comprehensive, open-source resource usage measurement and analysis for HPC systems. Concurr. Comput. Pract. Exp. 26(13): 2191-2209 (2014) - 2013
- [j6]Thomas R. Furlani, Matthew D. Jones, Steven M. Gallo, Andrew E. Bruno, Charng-Da Lu, Amin Ghadersohi, Ryan J. Gentner, Abani K. Patra, Robert L. DeLeon, Gregor von Laszewski, Fugang Wang, Ann Zimmerman:
Performance metrics and auditing framework using application kernels for high-performance computer systems. Concurr. Comput. Pract. Exp. 25(7): 918-931 (2013) - 2011
- [j5]Richard M. Gronostajski, Joseph Guaneri, Dong Lee, Steven M. Gallo:
The NFI-Regulome Database: A tool for annotation and analysis of control regions of genes regulated by Nuclear Factor I transcription factors. J. Clin. Bioinform. 1: 4 (2011) - [j4]Steven M. Gallo, Dave T. Gerrard, David Miner, Michael Simich, Benjamin Des Soye, Casey M. Bergman, Marc S. Halfon:
REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila. Nucleic Acids Res. 39(Database-Issue): 118-123 (2011) - 2008
- [j3]Obi L. Griffith, Stephen B. Montgomery, Bridget Bernier, Bryan Chu, Katayoon Kasaian, Stein Aerts, Shaun Mahony, Monica C. Sleumer, Mikhail Bilenky, Maximilian Haeussler, Malachi Griffith, Steven M. Gallo, Belinda Giardine, Bart Hooghe, Peter Van Loo, Enrique Blanco, Amy Ticoll, Stuart Lithwick, Elodie Portales-Casamar, Ian J. Donaldson, Gordon Robertson, Claes Wadelius, Pieter J. De Bleser, Dominique Vlieghe, Marc S. Halfon, Wyeth W. Wasserman, Ross C. Hardison, Casey M. Bergman, Steven J. M. Jones:
ORegAnno: an open-access community-driven resource for regulatory annotation. Nucleic Acids Res. 36(Database-Issue): 107-113 (2008) - [j2]Marc S. Halfon, Steven M. Gallo, Casey M. Bergman:
REDfly 2.0: an integrated database of cis-regulatory modules and transcription factor binding sites in Drosophila. Nucleic Acids Res. 36(Database-Issue): 594-598 (2008) - 2006
- [j1]Steven M. Gallo, Long Li, Zihua Hu, Marc S. Halfon:
REDfly: a Regulatory Element Database for Drosophila. Bioinform. 22(3): 381-383 (2006)
Conference and Workshop Papers
- 2019
- [c26]Robert E. Settlage, Srijith Rajamohan, Kevin Lahmers, Alan Chalker, Eric Franz, Steven M. Gallo, David E. Hudak:
Portals for Interactive Steering of HPC Workflows. HUST/SE-HER/WIHPC@SC 2019: 179-189 - [c25]Robert E. Settlage, Alan Chalker, Eric Franz, Douglas Johnson, Steven M. Gallo, Edgar Moore, David E. Hudak:
Open OnDemand: HPC for Everyone. ISC Workshops 2019: 504-513 - [c24]Amit Chourasia, Scott Sakai, Michael Shapiro, Steven M. Gallo:
Improving Science Gateways usage reporting for XSEDE. PEARC 2019: 109:1-109:4 - 2018
- [c23]Jeanette M. Sperhac, Benjamin D. Plessinger, Jeffrey T. Palmer, Rudra Chakraborty, Gregary Dean, Martins Innus, Ryan Rathsam, Nikolay Simakov, Joseph P. White, Thomas R. Furlani, Steven M. Gallo, Robert L. DeLeon, Matthew D. Jones, Cynthia D. Cornelius, Abani K. Patra:
Federating XDMoD to Monitor Affiliated Computing Resources. CLUSTER 2018: 580-589 - [c22]Fugang Wang, Gregor von Laszewski, Timothy Whitson, Geoffrey C. Fox, Thomas R. Furlani, Robert L. DeLeon, Steven M. Gallo:
Evaluating the Scientific Impact of XSEDE. PEARC 2018: 10:1-10:8 - [c21]Nikolay A. Simakov, Robert L. DeLeon, Martins D. Innus, Matthew D. Jones, Joseph P. White, Steven M. Gallo, Abani K. Patra, Thomas R. Furlani:
Slurm Simulator: Improving Slurm Scheduler Performance on Large HPC systems by Utilization of Multiple Controllers and Node Sharing. PEARC 2018: 25:1-25:8 - 2017
- [c20]Nikolay A. Simakov, Martins D. Innus, Matthew D. Jones, Robert L. DeLeon, Joseph P. White, Steven M. Gallo, Abani K. Patra, Thomas R. Furlani:
A Slurm Simulator: Implementation and Parametric Analysis. PMBS@SC 2017: 197-217 - [c19]Joseph P. White, Martins Innus, Matthew D. Jones, Robert L. DeLeon, Nikolay Simakov, Jeffrey T. Palmer, Steven M. Gallo, Thomas R. Furlani, Michael T. Showerman, Robert Brunner, Andry Kot, Gregory H. Bauer, Brett M. Bode, Jeremy Enos, William T. Kramer:
Challenges of Workload Analysis on Large HPC Systems: A Case Study on NCSA Blue Waters. PEARC 2017: 6:1-6:8 - [c18]Ben Fulton, Steven M. Gallo, Robert Henschel, Thomas Yearke, Katy Börner, Robert L. DeLeon, Thomas R. Furlani, Craig A. Stewart, Matthew R. Link:
XDMoD Value Analytics: A Tool for Measuring the Financial and Intellectual ROI of Your Campus Cyberinfrastructure Facilities. PEARC 2017: 49:1-49:7 - 2016
- [c17]Nikolay A. Simakov, Robert L. DeLeon, Joseph P. White, Thomas R. Furlani, Martins Innus, Steven M. Gallo, Matthew D. Jones, Abani K. Patra, Benjamin D. Plessinger, Jeanette M. Sperhac, Thomas Yearke, Ryan Rathsam, Jeffrey T. Palmer:
A Quantitative Analysis of Node Sharing on HPC Clusters Using XDMoD Application Kernels. XSEDE 2016: 32:1-32:8 - 2015
- [c16]Gregor von Laszewski, Fugang Wang, Geoffrey Charles Fox, David L. Hart, Thomas R. Furlani, Robert L. DeLeon, Steven M. Gallo:
Peer Comparison of XSEDE and NCAR Publication Data. CLUSTER 2015: 531-532 - [c15]Steven M. Gallo, Joseph P. White, Robert L. DeLeon, Thomas R. Furlani, Helen Ngo, Abani K. Patra, Matthew D. Jones, Jeffrey T. Palmer, Nikolay Simakov, Jeanette M. Sperhac, Martins Innus, Thomas Yearke, Ryan Rathsam:
Analysis of XDMoD/SUPReMM Data Using Machine Learning Techniques. CLUSTER 2015: 642-649 - [c14]Robert L. DeLeon, Thomas R. Furlani, Steven M. Gallo, Joseph P. White, Matthew D. Jones, Abani K. Patra, Martins Innus, Thomas Yearke, Jeffrey T. Palmer, Jeanette M. Sperhac, Ryan Rathsam, Nikolay Simakov, Gregor von Laszewski, Fugang Wang:
TAS view of XSEDE users and usage. XSEDE 2015: 21:1-21:8 - 2014
- [c13]R. Todd Evans, William L. Barth, James C. Browne, Robert L. DeLeon, Thomas R. Furlani, Steven M. Gallo, Matthew D. Jones, Abani K. Patra:
Comprehensive resource use monitoring for HPC systems with TACC stats. HUST@SC 2014: 13-21 - [c12]Fugang Wang, Gregor von Laszewski, Geoffrey Charles Fox, Thomas R. Furlani, Robert L. DeLeon, Steven M. Gallo:
Towards a Scientific Impact Measuring Framework for Large Computing Facilities - a Case Study on XSEDE. XSEDE 2014: 25:1-25:8 - [c11]Joseph P. White, Robert L. DeLeon, Thomas R. Furlani, Steven M. Gallo, Matthew D. Jones, Amin Ghadersohi, Cynthia D. Cornelius, Abani K. Patra, James C. Browne, William L. Barth, John L. Hammond:
An Analysis of Node Sharing on HPC Clusters using XDMoD/TACC_Stats. XSEDE 2014: 31:1-31:8 - 2013
- [c10]James C. Browne, Robert L. DeLeon, Charng-Da Lu, Matthew D. Jones, Steven M. Gallo, Amin Ghadersohi, Abani K. Patra, William L. Barth, John L. Hammond, Thomas R. Furlani, Robert T. McLay:
Enabling comprehensive data-driven system management for large computational facilities. SC 2013: 86:1-86:11 - [c9]Thomas R. Furlani, Barry I. Schneider, Matthew D. Jones, John Towns, David L. Hart, Steven M. Gallo, Robert L. DeLeon, Charng-Da Lu, Amin Ghadersohi, Ryan J. Gentner, Abani K. Patra, Gregor von Laszewski, Fugang Wang, Jeffrey T. Palmer, Nikolay Simakov:
Using XDMoD to facilitate XSEDE operations, planning and analysis. XSEDE 2013: 46:1-46:8 - [c8]Charng-Da Lu, James C. Browne, Robert L. DeLeon, John L. Hammond, William L. Barth, Thomas R. Furlani, Steven M. Gallo, Matthew D. Jones, Abani K. Patra:
Comprehensive job level resource usage measurement and analysis for XSEDE HPC systems. XSEDE 2013: 50:1-50:8 - 2011
- [c7]Thomas R. Furlani, Matthew D. Jones, Steven M. Gallo, Andrew E. Bruno, Charng-Da Lu, Amin Ghadersohi, Ryan J. Gentner, Abani K. Patra, Robert L. DeLeon, Gregor von Laszewski, Lizhe Wang, Ann Zimmerman:
Performance metrics and auditing framework for high performance computer systems. TG 2011: 16:1 - 2009
- [c6]Jeffrey A. Delmerico, Nathanial A. Byrnes, Andrew E. Bruno, Matthew D. Jones, Steven M. Gallo, Vipin Chaudhary:
Comparing the performance of clusters, Hadoop, and Active Disks on microarray correlation computations. HiPC 2009: 378-387 - 2008
- [c5]John Paul Walters, Vipin Chaudhary, Minsuk Cha, Salvatore Guercio Jr., Steven M. Gallo:
A Comparison of Virtualization Technologies for HPC. AINA 2008: 861-868 - [c4]Russ Miller, Jonathan J. Bednasz, Kenneth Chiu, Steven M. Gallo, Madhusudhan Govindaraju:
Grid-based research, development, and deployment in New York State. IPDPS 2008: 1-8 - 2007
- [c3]Jonathan J. Bednasz, Steven M. Gallo, Russ Miller, Catherine L. Ruby, Charles M. Weeks:
Grid Computing in New York State, USA. ISPA Workshops 2007: 273-284 - 2004
- [c2]Mark L. Green, Steven M. Gallo, Russ Miller:
Grid-Enabled Virtual Organization Based Dynamic Firewall. GRID 2004: 208-216 - 1996
- [c1]Steven M. Gallo, Russ Miller, Charles M. Weeks:
The Design of a Portable Scientific Tool: A Case Study Using SnB. SC 1996: 3
Informal and Other Publications
- 2018
- [i3]Nikolay A. Simakov, Joseph P. White, Robert L. DeLeon, Steven M. Gallo, Matthew D. Jones, Jeffrey T. Palmer, Benjamin D. Plessinger, Thomas R. Furlani:
A Workload Analysis of NSF's Innovative HPC Resources Using XDMoD. CoRR abs/1801.04306 (2018) - [i2]Nikolay A. Simakov, Martins D. Innus, Matthew D. Jones, Joseph P. White, Steven M. Gallo, Robert L. DeLeon, Thomas R. Furlani:
Effect of Meltdown and Spectre Patches on the Performance of HPC Applications. CoRR abs/1801.04329 (2018) - 2017
- [i1]Matthew D. Jones, Joseph P. White, Martins Innus, Robert L. DeLeon, Nikolay Simakov, Jeffrey T. Palmer, Steven M. Gallo, Thomas R. Furlani, Michael T. Showerman, Robert Brunner, Andry Kot, Gregory H. Bauer, Brett M. Bode, Jeremy Enos, William T. Kramer:
Workload Analysis of Blue Waters. CoRR abs/1703.00924 (2017)
Coauthor Index
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