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Journal Articles
- 2014
[j12]Daniel J. Blankenberg
, James E. Johnson, The Galaxy Team, James Taylor, Anton Nekrutenko:
Wrangling Galaxy's reference data. Bioinform. 30(13): 1917-1919 (2014)- 2013
- [j11]Susan K. Rathe, James E. Johnson, Kevin A. T. Silverstein, Jesse J. Erdmann, Adrienne L. Watson, Flavia E. Popescu, John R. Ohlfest, David A. Largaespada:
MMuFLR: missense mutation and frameshift location reporter. Bioinform. 29(18): 2353-2354 (2013) - 2007
- [j10]James E. Johnson, David E. Langworthy, Leslie Lamport, Friedrich H. Vogt:
Formal specification of a Web services protocol. J. Log. Algebraic Methods Program. 70(1): 34-52 (2007) - 2003
- [j9]James E. Johnson, Martina V. Stromvik, Kevin A. T. Silverstein, John A. Crow, Elizabeth Shoop, Ernest F. Retzel:
TableView: Portable Genomic Data Visualization. Bioinform. 19(10): 1292-1293 (2003) - [j8]Anne-Françoise J. Lamblin, John A. Crow, James E. Johnson, Kevin A. T. Silverstein, Timothy M. Kunau, Alan Kilian, Diane Benz, Martina V. Stromvik, Gabriella Endré, Kathryn A. VandenBosch, Douglas R. Cook, Nevin D. Young, Ernest F. Retzel:
MtDB: a database for personalized data mining of the model legume Medicago truncatula transcriptome. Nucleic Acids Res. 31(1): 196-201 (2003) - 2001
- [j7]Kevin A. T. Silverstein, Elizabeth Shoop, James E. Johnson, Ernest F. Retzel:
MetaFam: a unified classification of protein families. I. Overview and statistics. Bioinform. 17(3): 249-261 (2001) - [j6]Elizabeth Shoop, Kevin A. T. Silverstein, James E. Johnson, Ernest F. Retzel:
MetaFam: a unified classification of protein families. II. Schema and query capabilities. Bioinform. 17(3): 262-271 (2001) - [j5]Kevin A. T. Silverstein, Elizabeth Shoop, James E. Johnson, Alan Kilian, John L. Freeman, Timothy M. Kunau, Ihab A. Awad, Margaret Mayer, Ernest F. Retzel:
The MetaFam Server: a comprehensive protein family resource. Nucleic Acids Res. 29(1): 49-51 (2001) - 2000
- [j4]Kevin A. T. Silverstein, Alan Kilian, John L. Freeman, James E. Johnson, Ihab A. Awad, Ernest F. Retzel:
PANAL: an integrated resource for Protein sequence ANALysis. Bioinform. 16(12): 1157-1158 (2000) - 1996
- [j3]James E. Johnson, William A. Laing:
Overview of the Spiralog File System. Digit. Tech. J. 8(2) (1996) - 1994
- [j2]James E. Johnson:
The Structure of the OpenVMS Management Station. Digit. Tech. J. 6(4) (1994) - 1991
- [j1]William A. Laing, James E. Johnson, Robert V. Landau:
Transaction Management Support in the VMS Operating System Kernel. Digit. Tech. J. 3(1) (1991)
Conference and Workshop Papers
- 2019
- [c3]Hamed Mohammadbagherpoor, Alperen Acemoglu, Leonardo S. Mattos, Darwin G. Caldwell, James E. Johnson, John Muth, Edward Grant:
Closed-Loop Control of a Magnetically Actuated Fiber-Coupled Laser for Computer-Assisted Laser Microsurgery. ICAR 2019: 654-659 - 2004
- [c2]James E. Johnson, Suraiya P. Ahmad:
EOS Aura atmospheric chemistry data products. IGARSS 2004: 4147-4149 - [c1]James E. Johnson, David E. Langworthy, Leslie Lamport, Friedrich H. Vogt:
Formal Specification of a Web Services Protocol. WSFM 2004: 147-158
Parts in Books or Collections
- 2016
- [p1]Candace R. Guerrero, Pratik D. Jagtap, James E. Johnson, Timothy J. Griffin:
Chapter 13. Using Galaxy for Proteomics. Proteome Informatics 2016: 289-320
Informal and Other Publications
- 2021
- [i2]Subina P. Mehta, Marie Crane, Emma Leith, Bérénice Batut, Saskia D. Hiltemann, Magnus Ø. Arntzen, Benoît Josef Kunath, Francesco Delogu, Ray Sajulga, Praveen Kumar, James E. Johnson, Timothy J. Griffin, Pratik D. Jagtap:
ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework. F1000Research 10: 103 (2021) - 2018
- [i1]James E. Johnson, Praveen Kumar, Caleb Easterly, Mark Esler, Subina P. Mehta, Arthur C. Eschenlauer, Adrian D. Hegeman, Pratik D. Jagtap, Timothy J. Griffin:
Improve your Galaxy text life: The Query Tabular Tool. F1000Research 7: 1604 (2018)
Coauthor Index
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