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Journal Articles
- 2024
[j49]Asif M. Khan
, Esra Büsra Isik, Tin Wee Tan:
A global initiative on addressing bioinformatics' grand challenges. Briefings Bioinform. 25(4) (2024)- 2021
- [j48]Haoran Ma, Tin Wee Tan, Kenneth Ban Hon Kim:
A multi-task CNN learning model for taxonomic assignment of human viruses. BMC Bioinform. 22-S(6): 194 (2021) - 2017
- [j47]Lina Yao, Kenneth Wei Min Tan, Tin Wee Tan, Yuan Kun Lee:
Exploring the transcriptome of non-model oleaginous microalga Dunaliella tertiolecta through high-throughput sequencing and high performance computing. BMC Bioinform. 18(1): 122:1-122:11 (2017) - [j46]Gabriel Noaje, Alan Davis, Jonathan Low, Lim Seng, Tan Geok Lian, Lukasz Orlowski, Dominic Chien, Sing-Wu Liou, Tin Wee Tan, Yves Poppe, Kenneth Ban Hon Kim, Andrew Howard, David Southwell, Jason Gunthorpe, Marek T. Michalewicz:
InfiniCortex - From Proof-of-concept to Production. Supercomput. Front. Innov. 4(2): 87-102 (2017) - 2016
- [j45]Jakub Chrzeszczyk, Andrew Howard, Andrzej Chrzeszczyk, Ben Swift, Peter Davis, Jonathan Low, Tin Wee Tan, Kenneth Ban Hon Kim:
InfiniCloud 2.0: distributing High Performance Computing across continents. Supercomput. Front. Innov. 3(2): 54-71 (2016) - 2015
- [j44]Christian Schönbach, Paul Horton, Siu-Ming Yiu, Tin Wee Tan, Shoba Ranganathan:
GIW and InCoB are advancing bioinformatics in the Asia-Pacific. BMC Bioinform. 16(S18): I1 (2015) - [j43]Kenneth Ban Hon Kim, Jakub Chrzeszczyk, Andrew Howard, Dongyang Li, Tin Wee Tan:
InfiniCloud: Leveraging the Global InfiniCortex Fabric and OpenStack Cloud for Borderless High Performance Computing of Genomic Data. Supercomput. Front. Innov. 2(3): 14-27 (2015) - 2014
- [j42]Shoba Ranganathan, Tin Wee Tan, Christian Schönbach:
InCoB2014: bioinformatics to tackle the data to knowledge challenge. BMC Bioinform. 15(S-16): I1 (2014) - [j41]Shoba Ranganathan, Tin Wee Tan, Christian Schönbach:
InCoB2014: Systems Biology update from the Asia-Pacific. BMC Syst. Biol. 8(S-4): I1 (2014) - 2013
- [j40]Christian Schönbach, Bairong Shen, Tin Wee Tan, Shoba Ranganathan:
InCoB2013 introduces Systems Biology as a major conference theme. BMC Syst. Biol. 7(S-3): S1 (2013) - [j39]Asif M. Khan, Tin Wee Tan, Christian Schönbach, Shoba Ranganathan:
APBioNet - Transforming Bioinformatics in the Asia-Pacific Region. PLoS Comput. Biol. 9(10) (2013) - 2012
- [j38]Christian Schönbach, Sissades Tongsima, Jonathan H. Chan, Vladimir Brusic, Tin Wee Tan, Shoba Ranganathan:
InCoB2012 Conference: from biological data to knowledge to technological breakthroughs. BMC Bioinform. 13(S-17): S1 (2012) - 2011
- [j37]Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki:
Towards BioDBcore: a community-defined information specification for biological databases. Database J. Biol. Databases Curation 2011 (2011) - [j36]Shoba Ranganathan, Christian Schönbach, Janet Kelso, Burkhard Rost, Sheila Nathan, Tin Wee Tan:
Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference. BMC Bioinform. 12(S-13): S1 (2011) - [j35]Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki:
Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res. 39(Database-Issue): 7-10 (2011) - 2010
- [j34]Christian Schönbach, Kenta Nakai, Tin Wee Tan, Shoba Ranganathan:
InCoB2010 - 9th International Conference on Bioinformatics at Tokyo, Japan, September 26-28, 2010. BMC Bioinform. 11(S-7): S1 (2010) - [j33]Daniel Tay, Kunde Ramamoorthy Govindarajan, Asif M. Khan, Terenze Ong, Hanif M. Samad, Wei Soh, Minyan Tong, Fan Zhang, Tin Wee Tan:
T3SEdb: data warehousing of virulence effectors secreted by the bacterial Type III Secretion System. BMC Bioinform. 11(S-7): S4 (2010) - 2009
- [j32]Khar Heng Choo, Tin Wee Tan, Shoba Ranganathan:
A comprehensive assessment of N-terminal signal peptides prediction methods. BMC Bioinform. 10(S-15): 2 (2009) - [j31]Shen Jean Lim, Asif Mohammad Khan, Mark De Silva, Kuan Siong Lim, Yongli Hu, Chay Hoon Tan, Tin Wee Tan:
The implementation of e-learning tools to enhance undergraduate bioinformatics teaching and learning: a case study in the National University of Singapore. BMC Bioinform. 10(S-15): 12 (2009) - [j30]Azura M. H. Zeti, Mohd Shahir Shamsir, Khairina Tajul-Arifin, Amir F. Merican, Rahmah Mohamed, Sheila Nathan, Nor Muhammad Mahadi, Suhaimi Napis, Tin Wee Tan:
Bioinformatics in Malaysia: Hope, Initiative, Effort, Reality, and Challenges. PLoS Comput. Biol. 5(8) (2009) - 2008
- [j29]Unitsa Sangket, Amornrat Phongdara, Wilaiwan Chotigeat, Darran Nathan, Woo-Yeon Kim, Jong Bhak, Chumpol Ngamphiw, Sissades Tongsima, Asif M. Khan, Honghuang Lin, Tin Wee Tan:
Automatic synchronization and distribution of biological databases and software over low-bandwidth networks among developing countries. Bioinform. 24(2): 299-301 (2008) - [j28]Olivo Miotto, A. T. Heiny, Tin Wee Tan, J. Thomas August, Vladimir Brusic:
Identification of human-to-human transmissibility factors in PB2 proteins of influenza A by large-scale mutual information analysis. BMC Bioinform. 9(S-1) (2008) - [j27]Olivo Miotto, Tin Wee Tan, Vladimir Brusic:
Rule-based knowledge aggregation for large-scale protein sequence analysis of influenza A viruses. BMC Bioinform. 9(S-1) (2008) - [j26]Shoba Ranganathan, Michael Gribskov, Tin Wee Tan:
Bioinformatics research in the Asia Pacific: a 2007 update. BMC Bioinform. 9(S-1) (2008) - [j25]Shoba Ranganathan, Wen-Lian Hsu, Ueng-Cheng Yang, Tin Wee Tan:
Emerging strengths in Asia Pacific bioinformatics. BMC Bioinform. 9(S-12) (2008) - 2007
- [j24]Joo Chuan Tong, Tin Wee Tan, Shoba Ranganathan:
Methods and protocols for prediction of immunogenic epitopes. Briefings Bioinform. 8(2): 96-108 (2007) - [j23]Joo Chuan Tong, Tin Wee Tan, Shoba Ranganathan:
In silico grouping of peptide/HLA class I complexes using structural interaction characteristics. Bioinform. 23(2): 177-183 (2007) - [j22]Lawrence J. K. Wee, Tin Wee Tan, Shoba Ranganathan:
CASVM: web server for SVM-based prediction of caspase substrates cleavage sites. Bioinform. 23(23): 3241-3243 (2007) - 2006
- [j21]Joo Chuan Tong, Guanglan Zhang, Tin Wee Tan, J. Thomas August, Vladimir Brusic, Shoba Ranganathan:
Prediction of HLA-DQ3.2ß Ligands: evidence of multiple registers in class II binding peptides. Bioinform. 22(10): 1232-1238 (2006) - [j20]Asif M. Khan, A. T. Heiny, Kenneth X. Lee, Kellathur N. Srinivasan, Tin Wee Tan, J. Thomas August, Vladimir Brusic:
Large-scale analysis of antigenic diversity of T-cell epitopes in dengue virus. BMC Bioinform. 7(S-5) (2006) - [j19]Shoba Ranganathan, Martti Tammi, Michael Gribskov, Tin Wee Tan:
Establishing bioinformatics research in the Asia Pacific. BMC Bioinform. 7(S-5) (2006) - [j18]Joo Chuan Tong, Tin Wee Tan, Animesh A. Sinha, Shoba Ranganathan:
Prediction of desmoglein-3 peptides reveals multiple shared T-cell epitopes in HLA DR4- and DR6- associated Pemphigus vulgaris. BMC Bioinform. 7(S-5) (2006) - [j17]Lawrence J. K. Wee, Tin Wee Tan, Shoba Ranganathan:
SVM-based prediction of caspase substrate cleavage sites. BMC Bioinform. 7(S-5) (2006) - [j16]Durgaprasad Bollina, Bernett T. K. Lee, Tin Wee Tan, Shoba Ranganathan:
ASGS: an alternative splicing graph web service. Nucleic Acids Res. 34(Web-Server-Issue): 444-447 (2006) - 2005
- [j15]Khar Heng Choo, Tin Wee Tan, Shoba Ranganathan:
SPdb - a signal peptide database. BMC Bioinform. 6: 249 (2005) - 2004
- [j14]Don Gilbert, Yoshihiro Ugawa, Markus Buchhorn, Tin Wee Tan, Akira Mizushima, Hyunchul Kim, Kilnam Chon, Seyeon Weon, Juncai Ma, Yoshihiro Ichiyanagi, Der-Ming Liou, Somnuk Keretho, Suhaimi Napis:
Bio-Mirror project for public bio-data distribution. Bioinform. 20(17): 3238-3240 (2004) - [j13]Bernett T. K. Lee, Tin Wee Tan, Shoba Ranganathan:
DEDB: a database of Drosophila melanogaster exons in splicing graph form. BMC Bioinform. 5: 189 (2004) - [j12]Vivek Gopalan, Tin Wee Tan, Bernett T. K. Lee, Shoba Ranganathan:
Xpro: database of eukaryotic protein-encoding genes. Nucleic Acids Res. 32(Database-Issue): 59-63 (2004) - [j11]Manisha Brahmachary, S. P. T. Krishnan, Judice L. Y. Koh, Asif M. Khan, Seng Hong Seah, Tin Wee Tan, Vladimir Brusic, Vladimir B. Bajic:
ANTIMIC: a database of antimicrobial sequences. Nucleic Acids Res. 32(Database-Issue): 586-589 (2004) - [j10]Lesheng Kong, Bernett Teck Kwong Lee, Joo Chuan Tong, Tin Wee Tan, Shoba Ranganathan:
SDPMOD: an automated comparative modeling server for small disulfide-bonded proteins. Nucleic Acids Res. 32(Web-Server-Issue): 356-359 (2004) - 2003
- [j9]Vivek Gopalan, Tin Wee Tan, Shoba Ranganathan:
XdomView: protein domain and exon position visualization. Bioinform. 19(1): 159-160 (2003) - [j8]Kunde Ramamoorthy Govindarajan, Pandjassarame Kangueane, Tin Wee Tan, Shoba Ranganathan:
MPID: MHC-Peptide Interaction Database for sequence-structure-function information on peptides binding to MHC molecules. Bioinform. 19(2): 309-310 (2003) - [j7]Bernett T. K. Lee, Tin Wee Tan, Shoba Ranganathan:
MGAlignIt: a web service for the alignment of mRNA/EST and genomic sequences. Nucleic Acids Res. 31(13): 3533-3536 (2003) - 2001
- [j6]Louxin Zhang, Chew-Kiat Heng, Tin Wee Tan:
Cladogramer: incorporating haplotype frequency into cladogram analysis. Bioinform. 17(5): 481-482 (2001) - [j5]Meena K. Sakharkar, Tin Wee Tan, Sandro J. de Souza:
Generation of a database containing discordant intron positions in eukaryotic genes (MIDB). Bioinform. 17(8): 671-675 (2001) - 2000
- [j4]Meena K. Sakharkar, Pandjassarame Kangueane, Tong W. Woon, Tin Wee Tan, Prasanna R. Kolatkar, Manyuan Long, Sandro J. de Souza:
IE-Kb: intron exon knowledge base. Bioinform. 16(12): 1151-1152 (2000) - [j3]Meena K. Sakharkar, Manyuan Long, Tin Wee Tan, Sandro J. de Souza:
ExInt: an Exon/Intron database. Nucleic Acids Res. 28(1): 191-192 (2000) - 1993
- [j2]B. K. Kiong, Tin Wee Tan:
A hypertext-like approach to navigating through the GCG sequence analysis package. Comput. Appl. Biosci. 9(2): 211-214 (1993) - [j1]B. K. Kiong, Tin Wee Tan:
A general UNIX interface for biocomputing and network information retrieval software. Comput. Appl. Biosci. 9(5): 581-586 (1993)
Conference and Workshop Papers
- 2016
- [c7]Marek T. Michalewicz, Tan Geok Lian, Lim Seng, Jonathan Low, David Southwell, Jason Gunthorpe, Gabriel Noaje, Dominic Chien, Yves Poppe, Jakub Chrzeszczyk, Andrew Howard, Tin Wee Tan, Sing-Wu Liou:
InfiniCortex: present and future invited paper. Conf. Computing Frontiers 2016: 267-273 - 2005
- [c6]Olivo Miotto, Tin Wee Tan, Vladimir Brusic:
Extraction by Example: Induction of Structural Rules for the Analysis of Molecular Sequence Data from Heterogeneous Sources. IDEAL 2005: 398-405 - 1998
- [c5]Jingchu Luo, Christoph W. Sensen, Tin Wee Tan:
Asia Pacific Bioinformatics Network. German Conference on Bioinformatics 1998 - [c4]Prasanna R. Kolatkar, Meena Kishore Sakharkar, T. C. Roderic, B. K. Kiong, L. Wong, Tin Wee Tan, S. Subbiah:
Integration of Bioinformatics tools at the National University of Singapore (NUS). MedInfo 1998: 356-360 - 1997
- [c3]Aaron Aw, Chan Fang Khoon, Jimmy Tan, Louisa Chan, Tin Wee Tan:
Creating Web Presence using NetPresence System. WebNet 1997 - 1996
- [c2]Chan Fang Khoon, James Seng, L.-S. Ooi, J.-K. Tan, Kevin Mok, Tin Wee Tan:
InterMUD Communications (IMC) Protocol with Extensions to VRMLise MultiUser Domains (MUDs). ASIAN 1996: 341-342 - [c1]Tin Wee Tan:
Would Internet Meet Global Expectation? COMPSAC 1996: 224
Reference Works
- 2019
- [r1]Christine L. P. Eng, Tin Wee Tan, Joo Chuan Tong:
Immunoinformatics Databases. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 931-939
Coauthor Index
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