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ORCIDVladimir B. Bajic
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2020 – today
- 2021
[j80]Artem S. Kasianov, Elena Gafarova
, Vladimir B. Bajic, Maxim Gafarov, Darya Gordeeva:
Machine Learning Methods and Qualimetric Approach to Determine the Conditions for Train Students in the Field of Environmental and Economic Activities. Int. J. Emerg. Technol. Learn. 16(3) (2021)- [j79]Maha A. Thafar, Rawan S. Olayan, Somayah Albaradei, Vladimir B. Bajic, Takashi Gojobori, Magbubah Essack, Xin Gao:
DTi2Vec: Drug-target interaction prediction using network embedding and ensemble learning. J. Cheminformatics 13(1): 71 (2021) - 2020
- [j78]Somayah Albaradei, Francesco Napolitano, Mahmut Uludag, Maha A. Thafar, Sara Napolitano, Magbubah Essack, Vladimir B. Bajic, Xin Gao:
Automated Counting of Colony Forming Units Using Deep Transfer Learning From a Model for Congested Scenes Analysis. IEEE Access 8: 164340-164346 (2020) - [j77]Tanvir Alam, Meshari Alazmi, Rayan Naser, Franceline Huser, Afaque A. Momin, Veronica Astro, SeungBeom Hong, Katarzyna W. Walkiewicz, Christian G. Canlas, Raphaël Huser, Amal J. Ali, Jasmeen Merzaban, Antonio Adamo, Mariusz Jaremko, Lukasz Jaremko, Vladimir B. Bajic, Xin Gao, Stefan T. Arold:
Proteome-level assessment of origin, prevalence and function of leucine-aspartic acid (LD) motifs. Bioinform. 36(4): 1121-1128 (2020) - [j76]Maha A. Thafar, Rawan S. Olayan, Haitham Ashoor, Somayah Albaradei, Vladimir B. Bajic, Xin Gao, Takashi Gojobori, Magbubah Essack:
DTiGEMS+: drug-target interaction prediction using graph embedding, graph mining, and similarity-based techniques. J. Cheminformatics 12(1): 44 (2020) - [c9]Maha A. Thafar, Somayah Albaradei, Rawan S. Olayan, Haitham Ashoor, Magbubah Essack, Vladimir B. Bajic:
Computational Drug-target Interaction Prediction based on Graph Embedding and Graph Mining. ICBBB 2020: 14-21
2010 – 2019
- 2019
- [j75]Manal Kalkatawi, Arturo Magana-Mora, Boris R. Jankovic, Vladimir B. Bajic:
DeepGSR: an optimized deep-learning structure for the recognition of genomic signals and regions. Bioinform. 35(7): 1125-1132 (2019) - [j74]Guangyu Wang, Hongyan Yin, Boyang Li, Chunlei Yu, Fan Wang, Xingjian Xu, Jiabao Cao, Yiming Bao, Liguo Wang, Amir Ali Abbasi, Vladimir B. Bajic, Lina Ma, Zhang Zhang:
Characterization and identification of long non-coding RNAs based on feature relationship. Bioinform. 35(17): 2949-2956 (2019) - [j73]Lina Ma, Jiabao Cao, Lin Liu, Qiang Du, Zhao Li, Dong Zou, Vladimir B. Bajic, Zhang Zhang:
LncBook: a curated knowledgebase of human long non-coding RNAs. Nucleic Acids Res. 47(Database-Issue): D128-D134 (2019) - [c8]Somayah Albaradei, Maha A. Thafar, Christophe Van Neste, Magbubah Essack, Vladimir B. Bajic:
Metastatic State of Colorectal Cancer can be Accurately Predicted with Methylome. ICBRA 2019: 125-130 - 2018
- [j72]Rawan S. Olayan, Haitham Ashoor, Vladimir B. Bajic:
DDR: efficient computational method to predict drug-target interactions using graph mining and machine learning approaches. Bioinform. 34(7): 1164-1173 (2018) - [j71]Rawan S. Olayan, Haitham Ashoor, Vladimir B. Bajic:
DDR: efficient computational method to predict drug-target interactions using graph mining and machine learning approaches. Bioinform. 34(21): 3779 (2018) - [j70]Dimitrios Kleftogiannis, Haitham Ashoor, Vladimir B. Bajic:
TELS: A Novel Computational Framework for Identifying Motif Signatures of Transcribed Enhancers. Genom. Proteom. Bioinform. 16(5): 332-341 (2018) - [j69]Ivan V. Kulakovskiy, Ilya E. Vorontsov, Ivan S. Yevshin, Ruslan N. Sharipov, Alla D. Fedorova, Eugene I. Rumynskiy, Yulia A. Medvedeva, Arturo Magana-Mora, Vladimir B. Bajic, Dmitri A. Papatsenko, Fedor A. Kolpakov, Vsevolod J. Makeev:
HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis. Nucleic Acids Res. 46(Database-Issue): D252-D259 (2018) - [j68]J. Kenneth Baillie, Andrew Bretherick, Christopher S. Haley, Sara Clohisey, Alan Gray, Lucile P. A. Neyton, Jeffrey Barrett, Eli A. Stahl, Albert Tenesa, Robin Andersson, J. Ben Brown, Geoffrey J. Faulkner, Marina Lizio, Ulf Schaefer, Carsten O. Daub, Masayoshi Itoh, Naoto Kondo, Timo Lassmann, Jun Kawai, IIBDGC Consortium, Damian Mole, Vladimir B. Bajic, Peter Heutink, Michael Rehli, Hideya Kawaji, Albin Sandelin, Harukazu Suzuki, Jack Satsangi, Christine A. Wells, Nir Hacohen, Tom C. Freeman, Yoshihide Hayashizaki, Piero Carninci, Alistair R. R. Forrest, David A. Hume:
Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease. PLoS Comput. Biol. 14(3) (2018) - 2017
- [j67]Ilham A. Shahmuradov, Rozaimi Mohamad Razali, Salim Bougouffa, Aleksandar Radovanovic, Vladimir B. Bajic:
bTSSfinder: a novel tool for the prediction of promoters in cyanobacteria and Escherichia coli. Bioinform. 33(3): 334-340 (2017) - [j66]Sebastian Schmeier, Tanvir Alam, Magbubah Essack, Vladimir B. Bajic:
TcoF-DB v2: update of the database of human and mouse transcription co-factors and transcription factor interactions. Nucleic Acids Res. 45(Database-Issue): D145-D150 (2017) - [j65]Mona Alshahrani, Othman Soufan, Arturo Magana-Mora, Vladimir B. Bajic:
DANNP: an efficient artificial neural network pruning tool. PeerJ Comput. Sci. 3: e137 (2017) - [j64]Imane Boudellioua, Rozaimi B. Mahamad Razali, Maxat Kulmanov, Yasmeen Hashish, Vladimir B. Bajic, Eva Goncalves-Serra, Nadia Schoenmakers, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf:
Semantic prioritization of novel causative genomic variants. PLoS Comput. Biol. 13(4) (2017) - 2016
- [j63]Dimitrios Kleftogiannis, Panos Kalnis, Vladimir B. Bajic:
Progress and challenges in bioinformatics approaches for enhancer identification. Briefings Bioinform. 17(6): 967-979 (2016) - [j62]Wail Ba-alawi, Othman Soufan, Magbubah Essack, Panos Kalnis, Vladimir B. Bajic:
DASPfind: new efficient method to predict drug-target interactions. J. Cheminformatics 8(1): 15:1-15:9 (2016) - [j61]Othman Soufan, Wail Ba-alawi, Moataz Afeef, Magbubah Essack, Panos Kalnis, Vladimir B. Bajic:
DRABAL: novel method to mine large high-throughput screening assays using Bayesian active learning. J. Cheminformatics 8(1): 64:1-64:14 (2016) - [j60]Ivan V. Kulakovskiy, Ilya E. Vorontsov, Ivan S. Yevshin, Anastasiia V. Soboleva, Artem S. Kasianov, Haitham Ashoor, Wail Ba-alawi, Vladimir B. Bajic, Yulia A. Medvedeva, Fedor A. Kolpakov, Vsevolod J. Makeev:
HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res. 44(Database-Issue): 116-125 (2016) - [j59]Adil Salhi, Magbubah Essack, Aleksandar Radovanovic, Benoit Marchand, Salim Bougouffa, André Antunes, Marta Filipa Simões, Feras F. Lafi, Olaa A. Motwalli, Ameerah Bokhari, Tariq Malas, Soha Al Amoudi, Ghofran Othum, Intikhab Alam, Katsuhiko Mineta, Xin Gao, Robert Hoehndorf, John A. C. Archer, Takashi Gojobori, Vladimir B. Bajic:
DESM: portal for microbial knowledge exploration systems. Nucleic Acids Res. 44(Database-Issue): 624-633 (2016) - 2015
- [j58]Haitham Ashoor, Dimitrios Kleftogiannis, Aleksandar Radovanovic, Vladimir B. Bajic:
DENdb: database of integrated human enhancers. Database J. Biol. Databases Curation 2015 (2015) - [j57]Abdullah M. Khamis, Magbubah Essack, Xin Gao, Vladimir B. Bajic:
Distinct profiling of antimicrobial peptide families. Bioinform. 31(6): 849-856 (2015) - [j56]Fangqing Zhao, Vladimir B. Bajic:
The Value and Significance of Metagenomics of Marine Environments. Genom. Proteom. Bioinform. 13(5): 271-274 (2015) - [j55]André Antunes, Intikhab Alam, Marta Filipa Simões, Camille Daniels, Ari J. S. Ferreira, Rania Siam, Hamza El-Dorry, Vladimir B. Bajic:
First Insights into the Viral Communities of the Deep-sea Anoxic Brines of the Red Sea. Genom. Proteom. Bioinform. 13(5): 304-309 (2015) - [j54]Marta Filipa Simões, André Antunes, Cristiane A. Ottoni, Mohammad Shoaib Amini, Intikhab Alam, Hanin Alzubaidy, Noor-Azlin Mokhtar, John A. C. Archer, Vladimir B. Bajic:
Soil and Rhizosphere Associated Fungi in Gray Mangroves (Avicennia marina) from the Red Sea - A Metagenomic Approach. Genom. Proteom. Bioinform. 13(5): 310-320 (2015) - [j53]Lina Ma, Ang Li, Dong Zou, Xingjian Xu, Lin Xia, Jun Yu, Vladimir B. Bajic, Zhang Zhang:
LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs. Nucleic Acids Res. 43(Database-Issue): 187-192 (2015) - [j52]Arwa Bin Raies, Hicham Mansour, Roberto Incitti, Vladimir B. Bajic:
DDMGD: the database of text-mined associations between genes methylated in diseases from different species. Nucleic Acids Res. 43(Database-Issue): 879-886 (2015) - 2014
- [j51]Salim Bougouffa, Aleksandar Radovanovic, Magbubah Essack, Vladimir B. Bajic:
DEOP: a database on osmoprotectants and associated pathways. Database J. Biol. Databases Curation 2014 (2014) - [j50]The Fantom Consortium, RIKEN PMII, RIKEN CLST (DGT), Alistair R. R. Forrest, Hideya Kawaji, Michael Rehli, J. Kenneth Baillie, Michiel J. L. de Hoon, Vanja Haberle, Timo Lassmann, Ivan V. Kulakovskiy, Marina Lizio, Masayoshi Itoh, Robin Andersson, Christopher J. Mungall, Terrence F. Meehan, Sebastian Schmeier, Nicolas Bertin, Mette Jørgensen, Emmanuel Dimont, Erik Arner, Christian Schmidl, Ulf Schaefer, Yulia A. Medvedeva, Charles Plessy, Morana Vitezic, Jessica Severin, Colin A. M. Semple, Yuri Ishizu, Robert S. Young, Margherita Francescatto, Intikhab Alam, Davide Albanese, Gabriel M. Altschuler, Takahiro Arakawa, John A. C. Archer, Peter Arner, Magda Babina, Sarah Rennie, Piotr J. Balwierz, Anthony G. Beckhouse, Swati Pradhan-Bhatt, Judith A. Blake, Antje Blumenthal, Beatrice Bodega, Alessandro Bonetti, James Briggs, Frank Brombacher, A. Maxwell Burroughs, Andrea Califano, Carlo V. Cannistraci, Daniel Carbajo, Yun Chen, Marco Chierici, Yari Ciani, Hans Clevers, Emiliano Dalla, Carrie A. Davis, Michael Detmar, Alexander D. Diehl, Taeko Dohi, Finn Drabløs, Albert S. B. Edge, Matthias Edinger, Karl Ekwall, Mitsuhiro Endoh, Hideki Enomoto, Michela Fagiolini, Lynsey Fairbairn, Hai Fang, Mary C. Farach-Carson, Geoffrey J. Faulkner, Alexander V. Favorov, Malcolm E. Fisher, Martin C. Frith, Rie Fujita, Shiro Fukuda, Cesare Furlanello, Masaaki Furuno, Jun-ichi Furusawa, Teunis B. Geijtenbeek, Andrew P. Gibson, Thomas R. Gingeras, Daniel Goldowitz, Julian Gough, Sven Guhl, Reto Guler, Stefano Gustincich, Thomas J. Ha, Masahide Hamaguchi, Mitsuko Hara, Matthias Harbers, Jayson Harshbarger, Akira Hasegawa, Yuki Hasegawa, Takehiro Hashimoto, Meenhard Herlyn, Kelly J. Hitchens, Shannan J. Ho Sui, Oliver M. Hofmann, Ilka Hoof, Fumi Hori, Lukasz Huminiecki, Kei Iida, Tomokatsu Ikawa, Boris R. Jankovic, Hui Jia, Anagha Joshi, Giuseppe Jurman, Bogumil Kaczkowski, Chieko Kai, Kaoru Kaida, Ai Kaiho, Kazuhiro Kajiyama, Mutsumi Kanamori-Katayama, Artem S. Kasianov, Takeya Kasukawa, Shintaro Katayama, Sachi Kato, Shuji Kawaguchi, Hiroshi Kawamoto, Yuki I. Kawamura, Tsugumi Kawashima, Judith S. Kempfle, Tony J. Kenna, Juha Kere, Levon M. Khachigian, Toshio Kitamura, S. Peter Klinken, Alan J. Knox, Miki Kojima, Soichi Kojima, Naoto Kondo, Haruhiko Koseki, Shigeo Koyasu, Sarah Krampitz, Atsutaka Kubosaki, Andrew T. Kwon, Jeroen F. J. Laros, Weonju Lee, Andreas Lennartsson, Kang Li, Berit Lilje, Leonard Lipovich, Alan Mackay-Sim, Ri-ichiroh Manabe, Jessica Cara Mar, Benoit Marchand, Anthony Mathelier, Niklas Mejhert, Alison M. Meynert, Yosuke Mizuno, David A. de Lima Morais, Hiromasa Morikawa, Mitsuru Morimoto, Kazuyo Moro, Efthymios Motakis, Hozumi Motohashi, Christine Mummery, Mitsuyoshi Murata, Sayaka Nagao-Sato, Yutaka Nakachi, Fumio Nakahara, Toshiyuki Nakamura, Yukio Nakamura, Kenichi Nakazato, Erik van Nimwegen, Noriko Ninomiya, Hiromi Nishiyori, Shohei Noma, Tadasuke Nozaki, Soichi Ogishima, Naganari Ohkura, Hiroko Ohmiya, Hiroshi Ohno, Mitsuhiro Ohshima, Mariko Okada-Hatakeyama, Yasushi Okazaki, Valerio Orlando, Dmitry A. Ovchinnikov, Arnab Pain, Robert Passier, Margaret Patrikakis, Helena Persson, Silvano Piazza, James G. D. Prendergast, Owen J. L. Rackham, Jordan A. Ramilowski, Mamoon Rashid, Timothy Ravasi, Patrizia Rizzu, Marco Roncador, Sugata Roy, Morten B. Rye, Eri Saijyo, Antti Sajantila, Akiko Saka, Shimon Sakaguchi, Mizuho Sakai, Hiroki Sato, Hironori Sato, Suzana Savvi, Alka Saxena, Claudio Schneider, Erik A. Schultes, Gundula G. Schulze-Tanzil, Anita Schwegmann, Thierry Sengstag, Guojun Sheng, Hisashi Shimoji, Yishai Shimoni, Jay W. Shin, Christophe Simon, Daisuke Sugiyama, Takaaki Sugiyama, Masanori Suzuki, Naoko Suzuki, Rolf K. Swoboda, Peter A. C. 't Hoen, Michihira Tagami, Naoko Takahashi, Jun Takai, Hiroshi Tanaka, Hideki Tatsukawa, Zuotian Tatum, Mark Thompson, Hiroo Toyoda, Tetsuro Toyoda, Eivind Valen, Marc van de Wetering, Linda M. van den Berg, Roberto Verardo, Dipti Vijayan, Ilya E. Vorontsov, Wyeth W. Wasserman, Shoko Watanabe, Christine A. Wells, Louise N. Winteringham, Ernst Wolvetang, Emily J. Wood, Yoko Yamaguchi, Masayuki Yamamoto, Misako Yoneda, Yohei Yonekura, Shigehiro Yoshida, Susan E. Zabierowski, Peter G. Zhang, Xiaobei Zhao, Silvia Zucchelli, Kim M. Summers, Harukazu Suzuki, Carsten O. Daub, Jun Kawai, Peter Heutink, Winston Hide, Tom C. Freeman, Boris Lenhard, Vladimir B. Bajic, Martin S. Taylor, Vsevolod J. Makeev, Albin Sandelin, David A. Hume, Piero Carninci, Yoshihide Hayashizaki:
A promoter-level mammalian expression atlas. Nat. 507(7493): 462-470 (2014) - 2013
- [j49]Arturo Magana-Mora, Haitham Ashoor, Boris R. Jankovic, Allan Kamau, Karim Awara, Rajesh Chowdhary, John A. C. Archer, Vladimir B. Bajic:
Dragon TIS Spotter: an Arabidopsis-derived predictor of translation initiation sites in plants. Bioinform. 29(1): 117-118 (2013) - [j48]Manal Kalkatawi, Farania Rangkuti, Michael Schramm, Boris R. Jankovic, Allan Kamau, Rajesh Chowdhary, John A. C. Archer, Vladimir B. Bajic:
Dragon PolyA Spotter: predictor of poly(A) motifs within human genomic DNA sequences. Bioinform. 29(11): 1484 (2013) - [j47]Bo Xie, Boris R. Jankovic, Vladimir B. Bajic, Le Song, Xin Gao:
Poly(A) motif prediction using spectral latent features from human DNA sequences. Bioinform. 29(13): 316-325 (2013) - [j46]Haitham Ashoor, Aurélie Hérault, Aurélie Kamoun, François Radvanyi, Vladimir B. Bajic, Emmanuel Barillot, Valentina Boeva:
HMCan: a method for detecting chromatin modifications in cancer samples using ChIP-seq data. Bioinform. 29(23): 2979-2986 (2013) - [j45]Rajesh Chowdhary, Jinfeng Zhang, Sin Lam Tan, Daniel E. Osborne, Vladimir B. Bajic, Jun S. Liu:
PIMiner: a web tool for extraction of protein interactions from biomedical literature. Int. J. Data Min. Bioinform. 7(4): 450-462 (2013) - [j44]Sunil Sagar, Mandeep Kaur, Aleksandar Radovanovic, Vladimir B. Bajic:
Dragon exploration system on marine sponge compounds interactions. J. Cheminformatics 5: 11 (2013) - [j43]Ivan V. Kulakovskiy, Yulia A. Medvedeva, Ulf Schaefer, Artem S. Kasianov, Ilya E. Vorontsov, Vladimir B. Bajic, Vsevolod J. Makeev:
HOCOMOCO: a comprehensive collection of human transcription factor binding sites models. Nucleic Acids Res. 41(Database-Issue): 195-202 (2013) - 2012
- [j42]Manal Kalkatawi, Farania Rangkuti, Michael Schramm, Boris R. Jankovic, Allan Kamau, Rajesh Chowdhary, John A. C. Archer, Vladimir B. Bajic:
Dragon PolyA Spotter: predictor of poly(A) motifs within human genomic DNA sequences. Bioinform. 28(1): 127-129 (2012) - [j41]Mario Abdel Messih, Meghana Chitale, Vladimir B. Bajic, Daisuke Kihara, Xin Gao:
Protein domain recurrence and order can enhance prediction of protein functions. Bioinform. 28(18): 444-450 (2012) - [j40]Magbubah Essack, Cameron MacPherson, Sebastian Schmeier, Vladimir B. Bajic:
Identification of estrogen responsive genes using esophageal squamous cell carcinoma (ESCC) as a model. BMC Syst. Biol. 6: 135 (2012) - [j39]Vijayaraghava Seshadri Sundararajan, Musa Nur Gabere, Ashley Pretorius, Saleem Adam, Alan Christoffels, Minna Lehväslaiho, John A. C. Archer, Vladimir B. Bajic:
DAMPD: a manually curated antimicrobial peptide database. Nucleic Acids Res. 40(Database-Issue): 1108-1112 (2012) - 2011
- [j38]Mandeep Kaur, Cameron MacPherson, Sebastian Schmeier, Kothandaraman Narasimhan, Mahesh Choolani, Vladimir B. Bajic:
In Silico discovery of transcription factors as potential diagnostic biomarkers of ovarian cancer. BMC Syst. Biol. 5: 144 (2011) - [j37]Sebastian Schmeier, Ulf Schaefer, Magbubah Essack, Vladimir B. Bajic:
Network analysis of microRNAs and their regulation in human ovarian cancer. BMC Syst. Biol. 5: 183 (2011) - [j36]Daohang Sha, Vladimir B. Bajic:
An Optimized Recursive Learning Algorithm for Three-Layer Feedforward Neural Networks For Mimo Nonlinear System Identifications. Intell. Autom. Soft Comput. 17(2): 133-147 (2011) - [j35]Ulf Schaefer, Sebastian Schmeier, Vladimir B. Bajic:
TcoF-DB: dragon database for human transcription co-factors and transcription factor interacting proteins. Nucleic Acids Res. 39(Database-Issue): 106-110 (2011) - [j34]Monique Maqungo, Mandeep Kaur, Samuel K. Kwofie, Aleksandar Radovanovic, Ulf Schaefer, Sebastian Schmeier, Ekow Oppon, Alan Christoffels, Vladimir B. Bajic:
DDPC: Dragon Database of Genes associated with Prostate Cancer. Nucleic Acids Res. 39(Database-Issue): 980-985 (2011) - [c7]Benoit Marchand, Vladimir B. Bajic, Dinesh K. Kaushik:
Highly scalable ab initio genomic motif identification. SC 2011: 56:1-56:10 - 2010
- [j33]Rajesh Chowdhary, Vladimir B. Bajic, Difeng Dong, Limsoon Wong, Jun S. Liu:
Genome-wide analysis of regions similar to promoters of histone genes. BMC Syst. Biol. 4(S-1): S4 (2010) - [i1]Daohang Sha, Vladimir B. Bajic:
An optimized recursive learning algorithm for three-layer feedforward neural networks for mimo nonlinear system identifications. CoRR abs/1004.1997 (2010)
2000 – 2009
- 2009
- [j32]Mandeep Kaur, Aleksandar Radovanovic, Magbubah Essack, Ulf Schaefer, Monique Maqungo, Tracey Kibler, Sebastian Schmeier, Alan Christoffels, Kothandaraman Narasimhan, Mahesh Choolani, Vladimir B. Bajic:
Database for exploration of functional context of genes implicated in ovarian cancer. Nucleic Acids Res. 37(Database-Issue): 820-823 (2009) - 2008
- [c6]Jian-Xin Xu, B. Ashok, Sanjib Kumar Panda, Vladimir B. Bajic:
Modeling transcription termination of selected gene groups using support vector machine. IJCNN 2008: 384-389 - 2007
- [j31]D. Petkov, Vladimir B. Bajic:
Editorial. Int. J. Comput. Syst. Signals 8(1): 1 (2007) - [j30]Suisheng Tang, Zhuo Zhang, Sin Lam Tan, Man-Hung Eric Tang, Arun Prashanth Kumar, Sureshkumar Ramadoss, Vladimir B. Bajic:
KBERG: KnowledgeBase for Estrogen Responsive Genes. Nucleic Acids Res. 35(Database-Issue): 732-736 (2007) - 2006
- [j29]Rajesh Chowdhary, Sin Lam Tan, R. Ayesha Ali, Brent Boerlage, Limsoon Wong, Vladimir B. Bajic:
Dragon Promoter Mapper (DPM): a Bayesian framework for modelling promoter structures. Bioinform. 22(18): 2310-2312 (2006) - [j28]Manisha Brahmachary, Christian Schönbach, Liang Yang, Enli Huang, Sin Lam Tan, Rajesh Chowdhary, S. P. T. Krishnan, Chin-Yo Lin, David A. Hume, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Vladimir B. Bajic:
Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes. BMC Bioinform. 7(S-5) (2006) - [j27]Rajesh Chowdhary, Limsoon Wong, Vladimir B. Bajic:
Finding functional promoter motifs by computational methods: a word of caution. Int. J. Bioinform. Res. Appl. 2(3): 282-288 (2006) - [j26]D. Petkov, Vladimir B. Bajic:
Editorial. Int. J. Comput. Syst. Signals 7(2): 1 (2006) - [c5]Zhuo Zhang, Merlin Veronika, See-Kiong Ng, Vladimir B. Bajic:
Intelligent Extraction Versus Advanced Query: Recognize Transcription Factors from Databases. PRIB 2006: 133-139 - 2005
- [j25]Rajesh Chowdhary, R. Ayesha Ali, Werner Albig, Detlef Doenecke, Vladimir B. Bajic:
Promoter modeling: the case study of mammalian histone promoters. Bioinform. 21(11): 2623-2628 (2005) - [j24]Liang Yang, Enli Huang, Vladimir B. Bajic:
Some Implementation Issues of Heuristic Methods for Motif Extraction from DNA Sequences. Int. J. Comput. Syst. Signals 6(2): 3-12 (2005) - [c4]Rajesh Chowdhary, R. Ayesha Ali, Vladimir B. Bajic:
Modeling 5' regions of histone genes using Bayesian networks. APBC 2005: 283-288 - [c3]Sin Lam Tan, Vidhu Choudhary, Alan Christoffels, Byrappa Venkatesh, Vladimir B. Bajic:
Comparison of core promoters in Fugu rubripes and human. APBC 2005: 379 - 2004
- [j23]Suisheng Tang, Hao Han, Vladimir B. Bajic:
ERGDB: Estrogen Responsive Genes Database. Nucleic Acids Res. 32(Database-Issue): 533-536 (2004) - [j22]Manisha Brahmachary, S. P. T. Krishnan, Judice L. Y. Koh, Asif M. Khan, Seng Hong Seah, Tin Wee Tan, Vladimir Brusic, Vladimir B. Bajic:
ANTIMIC: a database of antimicrobial sequences. Nucleic Acids Res. 32(Database-Issue): 586-589 (2004) - [j21]Hong Pan, Li Zuo, Vidhu Choudhary, Zhuo Zhang, Shoi Houi Leow, Fui Teen Chong, Yingliang Huang, Victor Wui Siong Ong, Bijayalaxmi Mohanty, Sin Lam Tan, S. P. T. Krishnan, Vladimir B. Bajic:
Dragon TF Association Miner: a system for exploring transcription factor associations through text-mining. Nucleic Acids Res. 32(Web-Server-Issue): 230-234 (2004) - 2003
- [j20]Vladimir B. Bajic, D. Petkov:
Editorial: Broadening the Scope of IJCSS. Int. J. Comput. Syst. Signals 4(1): 1 (2003) - [j19]Vladimir B. Bajic, Vidhu Choudhary, Chuan Koh Hock:
Content analysis of the core promoter region of human genes. Silico Biol. 4(2): 109-125 (2003) - [j18]Allen Chong, Guanglan Zhang, Vladimir B. Bajic:
FIE2: a program for the extraction of genomic DNA sequences around the start and translation initiation site of human genes. Nucleic Acids Res. 31(13): 3546-3553 (2003) - [j17]Vladimir B. Bajic, Seng Hong Seah:
Dragon Gene Start Finder identifies approximate locations of the 5' ends of genes. Nucleic Acids Res. 31(13): 3560-3563 (2003) - [j16]Vladimir B. Bajic, Sin Lam Tan, Allen Chong, Suisheng Tang, Anders Ström, Jan-Åke Gustafsson, Chin-Yo Lin, Edison T. Liu:
Dragon ERE Finder version 2: a tool for accurate detection and analysis of estrogen response elements in vertebrate genomes. Nucleic Acids Res. 31(13): 3605-3607 (2003) - [c2]Vladimir B. Bajic, Vladimir Brusic, Jinyan Li, See-Kiong Ng, Limsoon Wong:
From Informatics to Bioinformatics. APBC 2003: 3-12 - [c1]Pobalan Govender, Vladimir B. Bajic:
A fuzzy logic tuned polynomial based predictor for processes having long dead-times. FUZZ-IEEE 2003: 85-89 - 2002
- [j15]Vladimir B. Bajic, Seng Hong Seah, Allen Chong, Guanglan Zhang, Judice L. Y. Koh, Vladimir Brusic:
Dragon Promoter Finder: recognition of vertebrate RNA polymerase II promoters. Bioinform. 18(1): 198-199 (2002) - [j14]Daohang Sha, Vladimir B. Bajic:
An on-line hybrid learning algorithm for multilayer perceptron in identification problems. Comput. Electr. Eng. 28(6): 587-598 (2002) - [j13]Vladimir B. Bajic, Allen Chong, Seng Hong Seah, Vladimir Brusic:
An Intelligent System for Vertebrate Promoter Recognition. IEEE Intell. Syst. 17(4): 64-70 (2002) - [j12]Vladimir B. Bajic, Suisheng Tang, Hao Han, Vladimir Brusic, Artemis G. Hatzigeorgiou:
Artificial Neural Networks Based Systems for Recognition of Genomic Signals and Regions: A Review. Informatica (Slovenia) 26(4) (2002) - [j11]Allen Chong, Guanglan Zhang, Vladimir B. Bajic:
Information and sequence extraction around the 5'-end and translation initiation site of human genes. Silico Biol. 2(4): 461-465 (2002) - [j10]Daohang Sha, Vladimir B. Bajic, Huayong Yang:
New model and sliding mode control of hydraulic elevator velocity tracking system. Simul. Pract. Theory 9(6-8): 365-385 (2002) - 2000
- [j9]Vladimir B. Bajic:
Comparing the Success of Different Prediction Software in Sequence Analysis: A Review. Briefings Bioinform. 1(3): 214-228 (2000) - [j8]Vladimir B. Bajic:
Editorial message. Int. J. Comput. Syst. Signals 1(1): 1-2 (2000) - [j7]P. Y. Tabakov, Vladimir B. Bajic:
Genetic algorithms and extraction of rules for detection of short DNA motifs. Int. J. Comput. Syst. Signals 1(1): 106-117 (2000) - [j6]Vladimir B. Bajic:
Editorial message from the Editor-in-Chief. Int. J. Comput. Syst. Signals 1(2): 1-2 (2000) - [j5]Arthur Jutan, Vladimir B. Bajic:
Special issue: Computer-Based Control Systems. Int. J. Comput. Syst. Signals 1(2): 180 (2000) - [j4]Vladimir B. Bajic, Daohang Sha, Xinzhong Li, Xingmei Wang:
AI-based discrete sliding-mode control for real-time implementation. Int. J. Comput. Syst. Signals 1(2): 195-213 (2000) - [j3]Zi Ma, Arthur Jutan, Vladimir B. Bajic:
Nonlinear self-turning controller for Hammerstein plants with application to a pressure tank. Int. J. Comput. Syst. Signals 1(2): 221-230 (2000) - [j2]Daohang Sha, Vladimir B. Bajic:
Robust discrete adaptive input-output-based sliding mode controller. Int. J. Syst. Sci. 31(12): 1601-1614 (2000)
1990 – 1999
- 1999
- [j1]Daohang Sha, Vladimir B. Bajic:
Adaptive On-line ANN Learning Algorithm and Application to Identification of Non-linear Systems. Informatica (Slovenia) 23(4) (1999)
Coauthor Index
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