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Journal Articles
- 2020
[j8]Charles E. Wimberley, Steffen Heber
:
PeakPass: Automating ChIP-Seq Blacklist Creation. J. Comput. Biol. 27(2): 259-268 (2020)- 2011
- [j7]Steffen Heber, Richard Mayr, Jens Stoye:
Common Intervals of Multiple Permutations. Algorithmica 60(2): 175-206 (2011) - 2010
- [j6]Brian E. Howard, Steffen Heber:
Towards reliable isoform quantification using RNA-SEQ data. BMC Bioinform. 11(S-3): 6 (2010) - 2009
- [j5]Brian E. Howard, Beate Sick, Steffen Heber:
Unsupervised assessment of microarray data quality using a Gaussian mixture model. BMC Bioinform. 10 (2009) - 2007
- [j4]Degui Zhi, Uri Keich, Pavel A. Pevzner, Steffen Heber, Haixu Tang:
Correcting Base-Assignment Errors in Repeat Regions of Shotgun Assembly. IEEE ACM Trans. Comput. Biol. Bioinform. 4(1): 54-64 (2007) - 2005
- [j3]Steffen Heber, Carla D. Savage:
Common intervals of trees. Inf. Process. Lett. 93(2): 69-74 (2005) - [j2]Michael Psarros, Steffen Heber, Manuela Sick, Gnanasekaran Thoppae, Keith Harshman, Beate Sick:
RACE: Remote Analysis Computation for gene Expression data. Nucleic Acids Res. 33(Web-Server-Issue): 638-643 (2005) - 2000
- [j1]Steffen Heber, Jens Stoye, Marcus Frohme, Jörg D. Hoheisel, Martin Vingron:
Contig Selection in Physical Mapping. J. Comput. Biol. 7(3-4): 395-408 (2000)
Conference and Workshop Papers
- 2022
- [c28]Elias Rotondo, Steffen Heber:
A New Discrete Whale Optimization Algorithm with a Spiral 3-opt Local Search for Solving the Traveling Salesperson Problem. ISMSI 2022: 37-42 - 2019
- [c27]Patrick Perkins, Steffen Heber:
Using a Novel Negative Selection Inspired Anomaly Detection Algorithm to Identify Corrupted Ribo-seq and RNA-seq Samples. BCB 2019: 457-465 - [c26]Patrick Perkins, Anna N. Stepanova, José M. Alonso, Steffen Heber:
RiboSimR: A Tool for Simulation and Power Analysis of Ribo-seq Data. ICCABS 2019: 121-133 - [c25]Charles E. Wimberley, Steffen Heber:
PeakPass: Automating ChIP-Seq Blacklist Creation. ISBRA 2019: 232-243 - 2018
- [c24]Samuel Ebert, Effat Farhana, Steffen Heber:
A parallel island model for biogeography-based classification rule mining in julia. GECCO (Companion) 2018: 1284-1291 - [c23]Patrick Perkins, Steffen Heber:
Identification of Ribosome Pause Sites Using a Z-Score Based Peak Detection Algorithm. ICCABS 2018: 1-6 - [c22]Bhupinder Sehra, Effat Farhana, Steffen Heber:
Identifying the Signatures of Missing Transcripts. ICCABS 2018: 1 - 2017
- [c21]Effat Farhana, Steffen Heber:
Biogeography-based rule mining for classification. GECCO 2017: 417-424 - [c20]Patrick Perkins, Steffen Heber:
riboStreamR: A web application for quality control, analysis, and visualization of Ribo-seq data. ICCABS 2017: 1 - 2015
- [c19]Qiwen Hu, Catharina Merchante, Anna N. Stepanova, José M. Alonso, Steffen Heber:
Mining transcript features related to translation in Arabidopsis using LASSO and random forest. ICCABS 2015: 1-6 - [c18]Qiwen Hu, Catharina Merchante, Anna N. Stepanova, José M. Alonso, Steffen Heber:
A Stacking-Based Approach to Identify Translated Upstream Open Reading Frames in Arabidopsis Thaliana. ISBRA 2015: 138-149 - 2013
- [c17]Karen Merchante, Qiwen Hu, Anna N. Stepanova, José M. Alonso, Steffen Heber:
Deep sequencing of ribosomal footprints for studying genome-wide mRNA translation in plants. ICCABS 2013: 1 - 2011
- [c16]Brian E. Howard, Paola Veronese, Steffen Heber:
Improved RNA-Seq Partitions in Linear Models for Isoform Quantification. BIBM 2011: 151-154 - [c15]Brian E. Howard, Xiaoping Tan, Paola Veronese, Steffen Heber:
Workshop: Using a transcript catalog and paired-end RNA-Seq data to identify differential alternative splicing. ICCABS 2011: 270 - 2009
- [c14]Brian E. Howard, Steffen Heber:
Towards Reliable Isoform Quantification Using RNA-Seq Data. BIBM 2009: 130-135 - [c13]Brian E. Howard, Beate Sick, Steffen Heber:
Practical Quality Assessment of Microarray Data by Simulation of Differential Gene Expression. ISBRA 2009: 18-27 - [c12]Jihye Kim, Sihui Zhao, Brian E. Howard, Steffen Heber:
Mining of cis-Regulatory Motifs Associated with Tissue-Specific Alternative Splicing. ISBRA 2009: 260-271 - [c11]Sihui Zhao, Jihye Kim, Steffen Heber:
Analysis of Cis-Regulatory Motifs in Cassette Exons by Incorporating Exon Skipping Rates. ISBRA 2009: 272-283 - 2007
- [c10]Jihye Kim, Sihui Zhao, Steffen Heber:
Finding association rules of cis-regulatory elements involved in alternative splicing. ACM Southeast Regional Conference 2007: 232-237 - [c9]Brian E. Howard, Beate Sick, Imara Perera, Yang Ju Im, Heike Winter-Sederoff, Steffen Heber:
Quality Assessment of Affymetrix GeneChip Data using the EM Algorithm and a Naive Bayes Classifier. BIBE 2007: 145-150 - [c8]Sihui Zhao, Jihye Kim, Steffen Heber:
Large-scale Discovery of Regulatory Motifs Involved in Alternative Splicing. BIBE 2007: 1399-1403 - [c7]Li Li, Steffen Heber, Qiang Zhang, Melvin E. Andersen:
Statistical Approaches to Identifying Androgen Response Elements. ICDM Workshops 2007: 95-100 - 2006
- [c6]Steffen Heber, Beate Sick:
Automatic quality assessment of Affymetrix GeneChip data. ACM Southeast Regional Conference 2006: 411-416 - 2002
- [c5]Anne Bergeron, Steffen Heber, Jens Stoye:
Common intervals and sorting by reversals: a marriage of necessity. ECCB 2002: 54-63 - [c4]Steffen Heber, Max A. Alekseyev, Sing-Hoi Sze, Haixu Tang, Pavel A. Pevzner:
Splicing graphs and EST assembly problem. ISMB 2002: 181-188 - 2001
- [c3]Steffen Heber, Jens Stoye:
Finding All Common Intervals of k Permutations. CPM 2001: 207-218 - [c2]Steffen Heber, Jens Stoye:
Algorithms for Finding Gene Clusters. WABI 2001: 252-263 - 2000
- [c1]Steffen Heber, Jens Stoye, Jörg D. Hoheisel, Martin Vingron:
Contig selection in physical mapping. RECOMB 2000: 155-164
Coauthor Index
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