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Journal Articles
- 2023
[j32]Andrew R. Francis
, Katharina T. Huber, Vincent Moulton, Taoyang Wu:
Encoding and ordering X-cactuses. Adv. Appl. Math. 142: 102414 (2023)- [j31]Vincent Moulton, Taoyang Wu:
Planar Rooted Phylogenetic Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 20(2): 1289-1297 (2023) - 2022
- [j30]Junlin Xu, Lingyu Cui, Jujuan Zhuang, Yajie Meng, Pingping Bing, Binsheng He, Geng Tian, Choi Kwok Pui, Taoyang Wu, Bing Wang, Jialiang Yang:
Evaluating the performance of dropout imputation and clustering methods for single-cell RNA sequencing data. Comput. Biol. Medicine 146: 105697 (2022) - [j29]Vincent Moulton, Taoyang Wu:
Posets and Spaces of $k$-Noncrossing RNA Structures. SIAM J. Discret. Math. 36(3): 1586-1611 (2022) - 2021
- [j28]Ben P. Tatman, Thomas Mock, Taoyang Wu, Cock van Oosterhout:
Significance of differential allelic expression in phenotypic plasticity and evolutionary potential of microbial eukaryotes. Quant. Biol. 9(4): 400-410 (2021) - 2019
- [j27]Katharina T. Huber, Vincent Moulton, Taoyang Wu:
Hierarchies from Lowest Stable Ancestors in Nonbinary Phylogenetic Networks. J. Classif. 36(2): 200-231 (2019) - [j26]Remie Janssen, Mark Jones, Steven Kelk, Georgios Stamoulis, Taoyang Wu:
Treewidth of display graphs: bounds, brambles and applications. J. Graph Algorithms Appl. 23(4): 715-743 (2019) - 2018
- [j25]Sarah Bastkowski, Daniel Mapleson, Andreas Spillner, Taoyang Wu, Monika Balvociute, Vincent Moulton:
SPECTRE: a suite of phylogenetic tools for reticulate evolution. Bioinform. 34(6): 1056-1057 (2018) - [j24]Vincent Moulton, Andreas Spillner, Taoyang Wu:
UPGMA and the normalized equidistant minimum evolution problem. Theor. Comput. Sci. 721: 1-15 (2018) - [j23]Steven Kelk, Georgios Stamoulis, Taoyang Wu:
Treewidth distance on phylogenetic trees. Theor. Comput. Sci. 731: 99-117 (2018) - 2017
- [j22]Katharina T. Huber, Leo van Iersel, Vincent Moulton, Céline Scornavacca, Taoyang Wu:
Reconstructing Phylogenetic Level-1 Networks from Nondense Binet and Trinet Sets. Algorithmica 77(1): 173-200 (2017) - [j21]Vincent Moulton, James Oldman, Taoyang Wu:
A cubic-time algorithm for computing the trinet distance between level-1 networks. Inf. Process. Lett. 123: 36-41 (2017) - 2016
- [j20]Sarah Bastkowski, Vincent Moulton, Andreas Spillner, Taoyang Wu:
The minimum evolution problem is hard: a link between tree inference and graph clustering problems. Bioinform. 32(4): 518-522 (2016) - [j19]Steven Kelk, Mareike Fischer, Vincent Moulton, Taoyang Wu:
Reduction rules for the maximum parsimony distance on phylogenetic trees. Theor. Comput. Sci. 646: 1-15 (2016) - 2015
- [j18]Vincent Moulton, Taoyang Wu:
A parsimony-based metric for phylogenetic trees. Adv. Appl. Math. 66: 22-45 (2015) - [j17]Luca Penso Dolfin, Taoyang Wu, Chris D. Greenman:
The combinatorics of tandem duplication. Discret. Appl. Math. 194: 1-22 (2015) - [j16]Sven Herrmann, Jack H. Koolen, Alice Lesser, Vincent Moulton, Taoyang Wu:
Optimal realizations of two-dimensional, totally-decomposable metrics. Discret. Math. 338(8): 1289-1299 (2015) - 2014
- [j15]Katharina T. Huber, Vincent Moulton, Charles Semple, Taoyang Wu:
Representing Partitions on Trees. SIAM J. Discret. Math. 28(3): 1152-1172 (2014) - 2013
- [j14]Andreas W. M. Dress, Vincent Moulton, Andreas Spillner, Taoyang Wu:
Obtaining splits from cut sets of tight spans. Discret. Appl. Math. 161(10-11): 1409-1420 (2013) - [j13]Peter J. Humphries, Taoyang Wu:
On the Neighborhoods of Trees. IEEE ACM Trans. Comput. Biol. Bioinform. 10(3): 721-728 (2013) - [j12]Si Li, Kwok Pui Choi, Taoyang Wu, Louxin Zhang:
Maximum Likelihood Inference of the Evolutionary History of a PPI Network from the Duplication History of Its Proteins. IEEE ACM Trans. Comput. Biol. Bioinform. 10(6): 1412-1421 (2013) - [j11]Si Li, Kwok Pui Choi, Taoyang Wu:
Degree distribution of large networks generated by the partial duplication model. Theor. Comput. Sci. 476: 94-108 (2013) - 2012
- [j10]Jack H. Koolen, Alice Lesser, Vincent Moulton, Taoyang Wu:
Injective optimal realizations of finite metric spaces. Discret. Math. 312(10): 1602-1610 (2012) - 2011
- [j9]Taoyang Wu, Louxin Zhang:
Structural properties of the reconciliation space and their applications in enumerating nearly-optimal reconciliations between a gene tree and a species tree. BMC Bioinform. 12(S-9): S7 (2011) - [j8]László A. Székely, Hua Wang, Taoyang Wu:
The sum of the distances between the leaves of a tree and the 'semi-regular' property. Discret. Math. 311(13): 1197-1203 (2011) - 2010
- [j7]Andreas W. M. Dress, Taoyang Wu, XiaoMing Xu:
A note on single-linkage equivalence. Appl. Math. Lett. 23(4): 432-435 (2010) - [j6]Peter J. Cameron, Taoyang Wu:
The complexity of the weight problem for permutation and matrix groups. Discret. Math. 310(3): 408-416 (2010) - 2009
- [j5]Andreas W. M. Dress, Vincent Moulton, Andreas Spillner, Taoyang Wu:
Barriers in metric spaces. Appl. Math. Lett. 22(8): 1150-1153 (2009) - [j4]Christoph Buchheim, Peter J. Cameron, Taoyang Wu:
On the subgroup distance problem. Discret. Math. 309(4): 962-968 (2009) - [j3]Taoyang Wu, Peter J. Cameron, Søren Riis:
On the guessing number of shift graphs. J. Discrete Algorithms 7(2): 220-226 (2009) - [j2]Taoyang Wu, Vincent Moulton, Mike A. Steel:
Refining Phylogenetic Trees Given Additional Data: An Algorithm Based on Parsimony. IEEE ACM Trans. Comput. Biol. Bioinform. 6(1): 118-125 (2009) - 2007
- [j1]Peter J. Cameron, Taoyang Wu:
The complexity of the Weight Problem for permutation groups. Electron. Notes Discret. Math. 28: 109-116 (2007)
Conference and Workshop Papers
- 2013
- [c4]Yu Zheng, Taoyang Wu, Louxin Zhang:
A Linear-Time Algorithm for Reconciliation of Non-binary Gene Tree and Binary Species Tree. COCOA 2013: 190-201 - 2012
- [c3]Si Li, Kwok Pui Choi, Taoyang Wu, Louxin Zhang:
Reconstruction of Network Evolutionary History from Extant Network Topology and Duplication History. ISBRA 2012: 165-176 - 2011
- [c2]Louxin Zhang, Yen Kaow Ng, Taoyang Wu, Yu Zheng:
Network model and efficient method for detecting relative duplications or horizontal gene transfers. ICCABS 2011: 214-219 - 2006
- [c1]Taoyang Wu:
Extremal Sequence Theory. ACiD 2006: 159
Informal and Other Publications
- 2018
- [i9]Remie Janssen, Mark Jones, Steven Kelk, Georgios Stamoulis, Taoyang Wu:
Treewidth of display graphs: bounds, brambles and applications. CoRR abs/1809.00907 (2018) - 2017
- [i8]Leo van Iersel, Vincent Moulton, Eveline de Swart, Taoyang Wu:
Binets: fundamental building blocks for phylogenetic networks. CoRR abs/1701.08995 (2017) - [i7]Vincent Moulton, James Oldman, Taoyang Wu:
A cubic-time algorithm for computing the trinet distance between level-1 networks. CoRR abs/1703.05097 (2017) - [i6]Steven Kelk, Georgios Stamoulis, Taoyang Wu:
Treewidth distance on phylogenetic trees. CoRR abs/1703.10840 (2017) - [i5]Vincent Moulton, Andreas Spillner, Taoyang Wu:
UPGMA and the normalized equidistant minimum evolution problem. CoRR abs/1704.00497 (2017) - [i4]Katharina T. Huber, Vincent Moulton, Charles Semple, Taoyang Wu:
Quarnet inference rules for level-1 networks. CoRR abs/1711.06720 (2017) - 2015
- [i3]Steven Kelk, Mareike Fischer, Vincent Moulton, Taoyang Wu:
Reduction rules for the maximum parsimony distance on phylogenetic trees. CoRR abs/1512.07459 (2015) - 2014
- [i2]Katharina T. Huber, Leo van Iersel, Vincent Moulton, Céline Scornavacca, Taoyang Wu:
Reconstructing phylogenetic level-1 networks from nondense binet and trinet sets. CoRR abs/1411.6804 (2014) - 2006
- [i1]Christoph Buchheim, Peter J. Cameron, Taoyang Wu:
On the Subgroup Distance Problem. Electron. Colloquium Comput. Complex. TR06 (2006)
Coauthor Index
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