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Journal Articles
- 2023
[j21]Qiao Jin
, Won Kim, Qingyu Chen, Donald C. Comeau, Lana Yeganova, W. John Wilbur, Zhiyong Lu:
MedCPT: Contrastive Pre-trained Transformers with large-scale PubMed search logs for zero-shot biomedical information retrieval. Bioinform. 39(10) (2023)- 2022
- [j20]Won Kim, Lana Yeganova, Donald C. Comeau, W. John Wilbur, Zhiyong Lu:
Towards a unified search: Improving PubMed retrieval with full text. J. Biomed. Informatics 134: 104211 (2022) - 2020
- [j19]Lana Yeganova, Sun Kim, Qingyu Chen, Grigory Balasanov, W. John Wilbur, Zhiyong Lu:
Better synonyms for enriching biomedical search. J. Am. Medical Informatics Assoc. 27(12): 1894-1902 (2020) - 2018
- [j18]Lana Yeganova, Won Kim, Donald C. Comeau, W. John Wilbur, Zhiyong Lu:
A Field Sensor: computing the composition and intent of PubMed queries. Database J. Biol. Databases Curation 2018: bay052 (2018) - [j17]Lana Yeganova, Sun Kim, Grigory Balasanov, W. John Wilbur:
Discovering themes in biomedical literature using a projection-based algorithm. BMC Bioinform. 19(1): 269:1-269:12 (2018) - 2016
- [j16]Sun Kim, Lana Yeganova, W. John Wilbur:
Meshable: searching PubMed abstracts by utilizing MeSH and MeSH-derived topical terms. Bioinform. 32(19): 3044-3046 (2016) - 2015
- [j15]Sun Kim, Haibin Liu, Lana Yeganova, W. John Wilbur:
Extracting drug-drug interactions from literature using a rich feature-based linear kernel approach. J. Biomed. Informatics 55: 23-30 (2015) - 2014
- [j14]Rezarta Islamaj Dogan, Donald C. Comeau, Lana Yeganova, W. John Wilbur:
Finding abbreviations in biomedical literature: three BioC-compatible modules and four BioC-formatted corpora. Database J. Biol. Databases Curation 2014 (2014) - [j13]Lana Yeganova, Won Kim, Sun Kim, W. John Wilbur:
Retro: concept-based clustering of biomedical topical sets. Bioinform. 30(22): 3240-3248 (2014) - [j12]Wanli Liu, Rezarta Islamaj Dogan, Sun Kim, Donald C. Comeau, Won Kim, Lana Yeganova, Zhiyong Lu, W. John Wilbur:
Author name disambiguation for PubMed. J. Assoc. Inf. Sci. Technol. 65(4): 765-781 (2014) - 2013
- [j11]Rezarta Islamaj Dogan, Yolanda Gil, Haym Hirsh, Narayanan Chatapuram Krishnan, Michael Lewis, Çetin Meriçli, Parisa Rashidi, Victor Raskin, Samarth Swarup, Wei Sun, Julia M. Taylor, Lana Yeganova:
Reports on the 2012 AAAI Fall Symposium Series. AI Mag. 34(1): 93-100 (2013) - 2012
- [j10]Rezarta Islamaj Dogan, Lana Yeganova:
Topics in machine learning for biomedical literature analysis and text retrieval. J. Biomed. Semant. 3(S-3): S1 (2012) - [j9]Lana Yeganova, Won Kim, Donald C. Comeau, W. John Wilbur:
Finding biomedical categories in Medline®. J. Biomed. Semant. 3(S-3): S3 (2012) - [j8]Won Kim, Lana Yeganova, Donald C. Comeau, W. John Wilbur:
Identifying well-formed biomedical phrases in MEDLINE® text. J. Biomed. Informatics 45(6): 1035-1041 (2012) - 2011
- [j7]Rezarta Islamaj Dogan, Lana Yeganova:
Topics in machine learning for biomedical literature analysis and text retrieval. BMC Bioinform. 12(S-3): I1 (2011) - [j6]Lana Yeganova, Donald C. Comeau, W. John Wilbur:
Machine learning with naturally labeled data for identifying abbreviation definitions. BMC Bioinform. 12(S-3): S6 (2011) - 2009
- [j5]Lana Yeganova, Donald C. Comeau, Won Kim, W. John Wilbur:
How to interpret PubMed queries and why it matters. J. Assoc. Inf. Sci. Technol. 60(2): 264-274 (2009) - [j4]Lowell Bruce Anderson, Helena Dandurova, James E. Falk, Lana Yeganova:
Relationships between Borda voting and Zermelo ranking. Soc. Choice Welf. 32(3): 355-365 (2009) - 2005
- [j3]W. John Wilbur, Lana Yeganova, Won Kim:
The Synergy Between PAV and AdaBoost. Mach. Learn. 61(1-3): 71-103 (2005) - 2004
- [j2]Lana Yeganova, Lawrence H. Smith, W. John Wilbur:
Identification of related gene/protein names based on an HMM of name variations. Comput. Biol. Chem. 28(2): 97-107 (2004) - 2003
- [j1]Lawrence H. Smith, Lana Yeganova, W. John Wilbur:
Hidden Markov models and optimized sequence alignments. Comput. Biol. Chem. 27(1): 77-84 (2003)
Conference and Workshop Papers
- 2023
- [c16]Mariana L. Neves, Antonio Jimeno-Yepes, Aurélie Névéol, Rachel Bawden, Giorgio Maria Di Nunzio, Roland Roller, Philippe Thomas, Federica Vezzani, Maika Vicente Navarro, Lana Yeganova, Dina Wiemann, Cristian Grozea:
Findings of the WMT 2023 Biomedical Translation Shared Task: Evaluation of ChatGPT 3.5 as a Comparison System. WMT 2023: 43-54 - 2022
- [c15]Mariana Neves, Antonio Jimeno-Yepes, Amy Siu, Roland Roller, Philippe Thomas, Maika Vicente Navarro, Lana Yeganova, Dina Wiemann, Giorgio Maria Di Nunzio, Federica Vezzani, Christel Gérardin, Rachel Bawden, Darryl Estrada, Salvador Lima-López, Eulàlia Farré-Maduell, Martin Krallinger, Cristian Grozea, Aurélie Névéol:
Findings of the WMT 2022 Biomedical Translation Shared Task: Monolingual Clinical Case Reports. WMT 2022: 694-723 - 2021
- [c14]Lana Yeganova, Won Kim, Donald C. Comeau, W. John Wilbur, Zhiyong Lu:
Improving PubMed Retrieval by Integrating Abstract and Full Text Search. AMIA 2021 - [c13]Lana Yeganova, Won Kim, Donald C. Comeau, W. John Wilbur, Zhiyong Lu:
Measuring the relative importance of full text sections for information retrieval from scientific literature. BioNLP@NAACL-HLT 2021: 247-256 - [c12]Lana Yeganova, Dina Wiemann, Mariana L. Neves, Federica Vezzani, Amy Siu, Inigo Jauregi Unanue, Maite Oronoz, Nancy Mah, Aurélie Névéol, David Martínez, Rachel Bawden, Giorgio Maria Di Nunzio, Roland Roller, Philippe Thomas, Cristian Grozea, Olatz Perez-de-Viñaspre, Maika Vicente Navarro, Antonio Jimeno-Yepes:
Findings of the WMT 2021 Biomedical Translation Shared Task: Summaries of Animal Experiments as New Test Set. WMT@EMNLP 2021: 664-683 - 2020
- [c11]Rachel Bawden, Giorgio Maria Di Nunzio, Cristian Grozea, Inigo Jauregi Unanue, Antonio Jimeno-Yepes, Nancy Mah, David Martínez, Aurélie Névéol, Mariana L. Neves, Maite Oronoz, Olatz Perez-de-Viñaspre, Massimo Piccardi, Roland Roller, Amy Siu, Philippe Thomas, Federica Vezzani, Maika Vicente Navarro, Dina Wiemann, Lana Yeganova:
Findings of the WMT 2020 Biomedical Translation Shared Task: Basque, Italian and Russian as New Additional Languages. WMT@EMNLP 2020: 660-687 - 2018
- [c10]Lana Yeganova, Donald C. Comeau, Won Kim, W. John Wilbur, Zhiyong Lu:
SingleCite: Towards an improved Single Citation Search in PubMed. BioNLP 2018: 151-155 - [c9]Won Kim, Lana Yeganova, Donald C. Comeau, W. John Wilbur, Zhiyong Lu:
MeSH-based dataset for measuring the relevance of text retrieval. BioNLP 2018: 161-165 - 2016
- [c8]Lana Yeganova, Won Kim, Sun Kim, Rezarta Islamaj Dogan, Wanli Liu, Donald C. Comeau, Zhiyong Lu, W. John Wilbur:
PubTermVariants: biomedical term variants and their use for PubMed search. BioNLP@ACL 2016: 141-145 - 2015
- [c7]Sun Kim, Lana Yeganova, W. John Wilbur:
Summarizing Topical Contents from PubMed Documents Using a Thematic Analysis. EMNLP 2015: 805-810 - 2014
- [c6]Sun Kim, Haibin Liu, Lana Yeganova, W. John Wilbur:
Extracting drug-drug interactions from literature using a rich feature-based linear kernel approach. AMIA 2014 - 2012
- [c5]Lana Yeganova:
Organizers. AAAI Fall Symposium: Information Retrieval and Knowledge Discovery in Biomedical Text 2012 - [c4]Lana Yeganova, Vahan Grigoryan, Won Kim, W. John Wilbur:
Automatic Identification of Key Concepts in Large PubMed Retrievals. AAAI Fall Symposium: Information Retrieval and Knowledge Discovery in Biomedical Text 2012 - 2011
- [c3]Lana Yeganova, Donald C. Comeau, Won Kim, W. John Wilbur:
Text Mining Techniques for Leveraging Positively Labeled Data. BioNLP@ACL 2011: 155-163 - [c2]Lana Yeganova, Won Kim, Donald C. Comeau, W. John Wilbur:
Comparison of Two Methods for Finding Biomedical Categories in Medline. ICMLA (2) 2011: 96-99 - 2010
- [c1]Lana Yeganova, Donald C. Comeau, W. John Wilbur:
Identifying Abbreviation Definitions Machine Learning with Naturally Labeled Data. ICMLA 2010: 499-505
Informal and Other Publications
- 2023
- [i4]Shubo Tian, Qiao Jin, Lana Yeganova, Po-Ting Lai, Qingqing Zhu, Xiuying Chen, Yifan Yang, Qingyu Chen, Won Kim, Donald C. Comeau, Rezarta Islamaj, Aadit Kapoor, Xin Gao, Zhiyong Lu:
Opportunities and Challenges for ChatGPT and Large Language Models in Biomedicine and Health. CoRR abs/2306.10070 (2023) - [i3]Qiao Jin, Won Kim, Qingyu Chen, Donald C. Comeau, Lana Yeganova, W. John Wilbur, Zhiyong Lu:
BioCPT: Contrastive Pre-trained Transformers with Large-scale PubMed Search Logs for Zero-shot Biomedical Information Retrieval. CoRR abs/2307.00589 (2023) - 2020
- [i2]Lana Yeganova, Rezarta Islamaj Dogan, Qingyu Chen, Robert Leaman, Alexis Allot, Chih-Hsuan Wei, Donald C. Comeau, Won Kim, Yifan Peng, W. John Wilbur, Zhiyong Lu:
Navigating the landscape of COVID-19 research through literature analysis: A bird's eye view. CoRR abs/2008.03397 (2020) - 2019
- [i1]Rezarta Islamaj Dogan, Lana Yeganova, Won Kim, Natalie Xie, W. John Wilbur:
PDC - a probabilistic distributional clustering algorithm: a case study on suicide articles in PubMed. CoRR abs/1912.02077 (2019)
Coauthor Index
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