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ORCIDComputational Biology and Chemistry, Volume 28
Volume 28, Number 1, February 2004
- Andrzej K. Konopka:
All we need is truth. 1-2 - Anne-Sophie Carpentier, Alessandra Riva
, Pierre Tisseur, Gilles Didier, Alain Hénaut:
The operons, a criterion to compare the reliability of transcriptome analysis tools: ICA is more reliable than ANOVA, PLS and PCA. 3-10 - Jacek Blazewicz, Piotr Formanowicz, Marta Kasprzak, Wojciech T. Markiewicz, Aleksandra Swiercz:
Tabu search algorithm for DNA sequencing by hybridization with isothermic libraries. 11-19 - Mercè Llabrés, Francesc Rosselló:
A new family of metrics for biopolymer contact structures. 21-37 - Yasuhito Inoue, Masami Ikeda, Toshio Shimizu:
Proteome-wide classification and identification of mammalian-type GPCRs by binary topology pattern. 39-49 - Jun-Xiong Xia, Masami Ikeda, Toshio Shimizu:
ConPred_elite: a highly reliable approach to transmembrane topology prediction. 51-60 - Hideaki Nakamura:
Prediction of peptide conformation using a scale-transformed entropy sampling algorithm. 61-66 - Werner Baumgartner:
Electrodiffusion near an ion channel and the effect of mobile buffer. 67-73 - Emily A. Berry, Andrew R. Dalby, Zheng Rong Yang:
Reduced bio basis function neural network for identification of protein phosphorylation sites: comparison with pattern recognition algorithms. 75-85 - Cathy H. Wu, Hongzhan Huang, Anastasia N. Nikolskaya, Zhang-Zhi Hu, Winona C. Barker:
The iProClass integrated database for protein functional analysis. 87-96
Volume 28, Number 2, April 2004
- Lana Yeganova, Lawrence H. Smith, W. John Wilbur:
Identification of related gene/protein names based on an HMM of name variations. 97-107 - Alessandra Riva, Marie-Odile Delorme, Tony Chevalier, Nicolas Guilhot, Corinne Hénaut, Alain Hénaut:
The difficult interpretation of transcriptome data: the case of the GATC regulatory network. 109-118 - David Hernández, Robin Gras, Ron D. Appel:
MoDEL: an efficient strategy for ungapped local multiple alignment. 119-128 - Andrzej Galat:
A note on clustering the functionally-related paralogues and orthologues of proteins: a case of the FK506-binding proteins (FKBPs). 129-140 - Yi Wang, Kuo-Bin Li:
An adaptive and iterative algorithm for refining multiple sequence alignment. 141-148 - Chun-Ting Zhang, Ren Zhang:
A nucleotide composition constraint of genome sequences. 149-153
Volume 28, Number 3, July 2004
- Andrzej K. Konopka:
Measuring quality of research: what do they mean and why they mean so?. 163 - Thomas E. Turner, Santiago Schnell, Kevin Burrage:
Stochastic approaches for modelling in vivo reactions. 165-178 - Jing-Fa Xiao, Ze-Sheng Li, Miao Sun, Yuan Zhang, Chia-Chung Sun:
Homology modeling and molecular dynamics study of GSK3/SHAGGY-like kinase. 179-188 - Yong Deng, Qi Liu, Yi-Xue Li:
Scoring hidden Markov models to discriminate -barrel membrane proteins. 189-194 - Scott E. Whitney, Alugupally Sudhir, Michael Nelson, Hendrik J. Viljoen:
Principles of rapid polymerase chain reactions: mathematical modeling and experimental verification. 195-209 - S. Mohseni-Zadeh, Pierre Brézellec, Jean-Loup Risler:
Cluster-C, an algorithm for the large-scale clustering of protein sequences based on the extraction of maximal cliques. 211-218 - Bjarne Knudsen, Ebbe Sloth Andersen, Christian K. Damgaard, Jørgen Kjems, Jan Gorodkin:
Evolutionary rate variation and RNA secondary structure prediction. 219-226 - Stefano Allesina, Robert E. Ulanowicz:
Cycling in ecological networks: Finn's index revisited . 227-233 - Yongxi Tan, Leming M. Shi, Weida Tong, G. T. Gene Hwang, Charles Wang:
Multi-class tumor classification by discriminant partial least squares using microarray gene expression data and assessment of classification models. 235-243
Volume 28, Number 4, October 2004
- Pei-lin Mao, Tie-Fei Liu, Kelly Kueh, Ping Wu:
Predicting the efficiency of UAG translational stop signal through studies of physicochemical properties of its composite mono- and dinucleotides. 245-256 - Teresa M. Przytycka, Yi-Kuo Yu:
Scale-free networks versus evolutionary drift. 257-264 - W. Jim Zheng, Velin Z. Spassov, Lisa Yan, Paul K. Flook, Sándor Szalma:
A hidden Markov model with molecular mechanics energy-scoring function for transmembrane helix prediction. 265-274 - Ying Huang, Jun Cai, Liang Ji, Yanda Li:
Classifying G-protein coupled receptors with bagging classification tree. 275-280 - David I. Mester, Yefim I. Ronin, Eviatar Nevo, Abraham B. Korol:
Fast and high precision algorithms for optimization in large-scale genomic problems. 281-290
Volume 28, Number 5-6, December 2004
- William R. Taylor:
A molecular model for transcription in the RNA world based on the ribosome large subunit. 313-319 - Robert E. Ulanowicz:
Quantitative methods for ecological network analysi. 321-339 - Ernesto Pérez-Rueda, Julio Collado-Vides, Lorenzo Segovia:
Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. 341-350 - Victor A. Simossis, Jaap Heringa:
The influence of gapped positions in multiple sequence alignments on secondary structure prediction methods. 351-366 - Jan Gorodkin:
Comparing two K-category assignments by a K-category correlation coefficient. 367-374 - Anna C. Tanczos, Rex A. Palmer, Brian S. Potter, José W. Saldanha, Brendan J. Howlin:
Antagonist binding in the rat muscarinic receptor: A study by docking and X-ray crystallography. 375-385
- Lawrence H. Smith, W. John Wilbur:
Retrieving definitional content for ontology development. 387-391 - Wentian Li, Dirk Holste:
An unusual 500, 000 bases long oscillation of guanine and cytosine content in human chromosome 21. 393-399 - Junwei Zhang, Masahiro Aizawa, Shinji Amari, Yoshio Iwasawa, Tatsuya Nakano, Kotoko Nakata:
Development of KiBank, a database supporting structure-based drug design. 401-407 - Zhang-Zhi Hu, Inderjeet Mani, Vincent Hermoso, Hongfang Liu, Cathy H. Wu:
iProLINK: an integrated protein resource for literature mining. 409-416 - Zhihua Du, Feng Lin:
A hierarchical clustering algorithm for MIMD architecture. 417-419
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