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ORCIDJournal of Biomedical Semantics, Volume 3 - Supplement
Volume 3, Number S-1, April 2012
- Larisa N. Soldatova, Susanna-Assunta Sansone, Michel Dumontier, Nigam H. Shah:
Selected papers from the 14th Annual Bio-Ontologies Special Interest Group Meeting. I1 - Paolo Ciccarese, Marco Ocana, Tim Clark:
Open semantic annotation of scientific publications using DOMEO. S1 - George Tsatsaronis, Natalia Macari, Sunna Torge, Heiko Dietze, Michael Schroeder:
A Maximum-Entropy approach for accurate document annotation in the biomedical domain. S2 - Simon Jupp, Robert Stevens, Robert Hoehndorf:
Logical Gene Ontology Annotations (GOAL): exploring gene ontology annotations with OWL. S3 - Elena Beisswanger, Udo Hahn:
Towards valid and reusable reference alignments - ten basic quality checks for ontology alignments and their application to three different reference data sets. S4 - Paea LePendu, Srinivasan V Iyer, Cédrick Fairon, Nigam H. Shah:
Annotation Analysis for Testing Drug Safety Signals using Unstructured Clinical Notes. S5 - Benjamin M. Good, Erik L. Clarke, Salvatore Loguercio, Andrew I. Su:
Linking genes to diseases with a SNPedia-Gene Wiki mashup. S6 - Olga Tcheremenskaia, Romualdo Benigni, Ivelina Nikolova, Nina Jeliazkova, Sylvia Escher, Monika Batke, Thomas Baier, Vladimir Poroikov, Alexey Lagunin, Micha Rautenberg, Barry J. Hardy:
OpenTox predictive toxicology framework: toxicological ontology and semantic media wiki-based OpenToxipedia. S7
Volume 3, Number S-2, September 2012
- Anika Oellrich, Georgios V. Gkoutos, Robert Hoehndorf, Dietrich Rebholz-Schuhmann:
Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology. S1 - Djamila Seddig-Raufie, Ludger Jansen, Daniel Schober, Martin Boeker, Niels Grewe, Stefan Schulz:
Proposed actions are no actions: re-modeling an ontology design pattern with a realist top-level ontology. S2 - Aleksandra Sojic, Oliver Kutz:
Open biomedical pluralism: formalising knowledge about breast cancer phenotypes. S3 - Daniel Schober, Ilinca Tudose, Vojtech Svátek, Martin Boeker:
OntoCheck: verifying ontology naming conventions and metadata completeness in Protégé 4. S4 - Frank Loebe, Frank Stumpf, Robert Hoehndorf, Heinrich Herre:
Towards improving phenotype representation in OWL. S5 - Georgios V. Gkoutos, Robert Hoehndorf:
Ontology-based cross-species integration and analysis of Saccharomyces cerevisiae phenotypes. S6 - Filipe Santana, Fred Freitas, Roberta Fernandes, Zulma Medeiros, Daniel Schober:
Towards an ontological representation of morbidity and mortality in Description Logics. S7 - Niels Grewe:
Continuation-like semantics for modeling structural process anomalies. S8 - Johannes Röhl:
Mechanisms in biomedical ontology. S9
Volume 3, Number S-3, October 2012
- Rezarta Islamaj Dogan, Lana Yeganova:
Topics in machine learning for biomedical literature analysis and text retrieval. S1 - K. E. Ravikumar, Haibin Liu, Judith D. Cohn, Michael E. Wall, Karin Verspoor:
Literature mining of protein-residue associations with graph rules learned through distant supervision. S2 - Lana Yeganova, Won Kim, Donald C. Comeau, W. John Wilbur:
Finding biomedical categories in Medline®. S3 - Rohit J. Kate:
Unsupervised grammar induction of clinical report sublanguage. S4 - Simon Clematide, Fabio Rinaldi:
Ranking relations between diseases, drugs and genes for a curation task. S5 - Sun Kim, W. John Wilbur:
Thematic clustering of text documents using an EM-based approach. S6
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