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ORCIDVladimir Poroikov
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2020 – today
- 2024
[j40]Walter Filgueira de Azevedo Jr.
, Rodrigo Quiroga, Marcos Ariel Villarreal, Nelson José Freitas da Silveira, Gabriela Bitencourt-Ferreira, Amauri Duarte da Silva, Martina Veit-Acosta, Patricia Rufino Oliveira, Marco Tutone, Nadezhda Yu. Biziukova, Vladimir Poroikov, Olga A. Tarasova, Stéphanie Baud:
SAnDReS 2.0: Development of machine-learning models to explore the scoring function space. J. Comput. Chem. 45(27, October): 2333-2346 (2024)- 2023
- [j39]Nikita Ionov, Dmitry S. Druzhilovskiy, Dmitry Filimonov, Vladimir Poroikov:
Phyto4Health: Database of Phytocomponents from Russian Pharmacopoeia Plants. J. Chem. Inf. Model. 63(7): 1847-1851 (2023) - [j38]Anton S. Kolodnitsky, Nikita Ionov, Anastasia V. Rudik, Dmitry Filimonov, Vladimir Poroikov:
HGMMX: Host Gut Microbiota Metabolism Xenobiotics Database. J. Chem. Inf. Model. 63(21): 6463-6468 (2023) - 2022
- [j37]Karina Pikalyova, Alexey Orlov, Arkadii I. Lin, Olga A. Tarasova, Gilles Marcou, Dragos Horvath, Vladimir Poroikov, Alexandre Varnek:
HIV-1 drug resistance profiling using amino acid sequence space cartography. Bioinform. 38(8): 2307-2314 (2022) - [j36]Dmitry A. Karasev, Boris Sobolev, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov:
The method predicting interaction between protein targets and small-molecular ligands with the wide applicability domain. Comput. Biol. Chem. 98: 107674 (2022) - [j35]Olga A. Tarasova, Anastasia V. Rudik, Nadezhda Yu. Biziukova, Dmitry Filimonov, Vladimir Poroikov:
Chemical named entity recognition in the texts of scientific publications using the naïve Bayes classifier approach. J. Cheminformatics 14(1): 55 (2022) - 2021
- [j34]Sita Sirisha Madugula, Lijo John, Selvaraman Nagamani, Anamika Singh Gaur, Vladimir Poroikov, G. Narahari Sastry:
Molecular descriptor analysis of approved drugs using unsupervised learning for drug repurposing. Comput. Biol. Medicine 138: 104856 (2021) - [j33]Olga A. Tarasova, Nadezhda Yu. Biziukova, Anastassia V. Rudik, Alexander V. Dmitriev, Dmitry Filimonov, Vladimir Poroikov:
Extraction of Data on Parent Compounds and Their Metabolites from Texts of Scientific Abstracts. J. Chem. Inf. Model. 61(4): 1683-1690 (2021) - [j32]Renan P. O. Costa, Lucas Fernandes Lucena, Lorena Mara A. Silva, Guilherme Julião Zocolo, Chonny Herrera-Acevedo, Luciana Scotti, Fernando Batista Da-Costa, Nikita Ionov, Vladimir Poroikov, Eugene N. Muratov, Marcus Tulius Scotti:
The SistematX Web Portal of Natural Products: An Update. J. Chem. Inf. Model. 61(6): 2516-2522 (2021) - 2020
- [j31]Leonid A. Stolbov, Dmitry S. Druzhilovskiy, Anastasia V. Rudik, Dmitry Filimonov, Vladimir Poroikov, Marc C. Nicklaus:
AntiHIV-Pred: web-resource for in silico prediction of anti-HIV/AIDS activity. Bioinform. 36(3): 978-979 (2020) - [j30]Dmitry S. Druzhilovskiy, Leonid A. Stolbov, Polina I. Savosina, Pavel V. Pogodin, Dmitry Filimonov, Alexander V. Veselovsky, Karen Stefanisko, Nadya I. Tarasova, Marc C. Nicklaus, Vladimir Poroikov:
Computational Approaches To Identify A Hidden Pharmacological Potential In Large Chemical Libraries. Supercomput. Front. Innov. 7(3) (2020)
2010 – 2019
- 2019
- [j29]Anastasiya V. Rudik, Vladislav M. Bezhentsev, Alexander V. Dmitriev, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov:
Metatox - Web application for generation of metabolic pathways and toxicity estimation. J. Bioinform. Comput. Biol. 17(1): 1940001:1-1940001:14 (2019) - [j28]Olga A. Tarasova, Nadezhda Yu. Biziukova, Dmitry Filimonov, Vladimir Poroikov, Marc C. Nicklaus:
Data Mining Approach for Extraction of Useful Information About Biologically Active Compounds from Publications. J. Chem. Inf. Model. 59(9): 3635-3644 (2019) - [j27]Pavel V. Pogodin, Alexey Lagunin, Anastasia V. Rudik, Dmitry S. Druzhilovskiy, Dmitry Filimonov, Vladimir Poroikov:
AntiBac-Pred: A Web Application for Predicting Antibacterial Activity of Chemical Compounds. J. Chem. Inf. Model. 59(11): 4513-4518 (2019) - [j26]Sergey Ivanov, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov:
Assessment of the cardiovascular adverse effects of drug-drug interactions through a combined analysis of spontaneous reports and predicted drug-target interactions. PLoS Comput. Biol. 15(7) (2019) - 2018
- [j25]Alexey Lagunin, Anastasia V. Rudik, Dmitry S. Druzhilovskiy, Dmitry Filimonov, Vladimir Poroikov:
ROSC-Pred: web-service for rodent organ-specific carcinogenicity prediction. Bioinform. 34(4): 710-712 (2018) - [j24]Vladislav M. Bezhentsev, Sergey Ivanov, Sandeep Kumar, Rajesh Kumar Goel, Vladimir Poroikov:
Identification of potential drug targets for treatment of refractory epilepsy using network pharmacology. J. Bioinform. Comput. Biol. 16(1): 1840002:1-1840002:12 (2018) - [j23]Anamika Singh Gaur, Selvaraman Nagamani, Karunakar Tanneeru, Dmitry S. Druzhilovskiy, Anastassia V. Rudik, Vladimir Poroikov, G. Narahari Sastry:
Molecular property diagnostic suite for diabetes mellitus (MPDSDM): An integrated web portal for drug discovery and drug repurposing. J. Biomed. Informatics 85: 114-125 (2018) - [j22]Sergey Ivanov, Alexey Lagunin, Anastasia V. Rudik, Dmitry Filimonov, Vladimir Poroikov:
ADVERPred-Web Service for Prediction of Adverse Effects of Drugs. J. Chem. Inf. Model. 58(1): 8-11 (2018) - 2017
- [j21]Olga A. Tarasova, Dmitry Filimonov, Vladimir Poroikov:
PASS-based approach to predict HIV-1 reverse transcriptase resistance. J. Bioinform. Comput. Biol. 15(2): 1650040:1-1650040:15 (2017) - [j20]Anastasia V. Rudik, Vladislav M. Bezhentsev, Alexander V. Dmitriev, Dmitry S. Druzhilovskiy, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov:
MetaTox: Web Application for Predicting Structure and Toxicity of Xenobiotics' Metabolites. J. Chem. Inf. Model. 57(4): 638-642 (2017) - 2016
- [j19]Anastasia V. Rudik, Alexander V. Dmitriev, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov:
Prediction of reacting atoms for the major biotransformation reactions of organic xenobiotics. J. Cheminformatics 8(1): 68:1-68:9 (2016) - 2015
- [j18]Anastasia V. Rudik, Alexander V. Dmitriev, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov:
SOMP: web server for in silico prediction of sites of metabolism for drug-like compounds. Bioinform. 31(12): 2046-2048 (2015) - [j17]Olga A. Tarasova, Aleksandra F. Urusova, Dmitry Filimonov, Marc C. Nicklaus, Alexey V. Zakharov, Vladimir Poroikov:
QSAR Modeling Using Large-Scale Databases: Case Study for HIV-1 Reverse Transcriptase Inhibitors. J. Chem. Inf. Model. 55(7): 1388-1399 (2015) - 2014
- [j16]Damanpreet Singh, Dinesh Y. Gawande, Tanveer Singh, Vladimir Poroikov, Rajesh Kumar Goel:
Revealing pharmacodynamics of medicinal plants using in silico approach: A case study with wet lab validation. Comput. Biol. Medicine 47: 1-6 (2014) - [j15]Anastasia V. Rudik, Alexander V. Dmitriev, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov:
Metabolism Site Prediction Based on Xenobiotic Structural Formulas and PASS Prediction Algorithm. J. Chem. Inf. Model. 54(2): 498-507 (2014) - 2013
- [j14]Alexey Lagunin, Sergey Ivanov, Anastasia V. Rudik, Dmitry Filimonov, Vladimir Poroikov:
DIGEP-Pred: web service for in silico prediction of drug-induced gene expression profiles based on structural formula. Bioinform. 29(16): 2062-2063 (2013) - 2012
- [j13]Olga Tcheremenskaia, Romualdo Benigni, Ivelina Nikolova, Nina Jeliazkova, Sylvia Escher, Monika Batke, Thomas Baier, Vladimir Poroikov, Alexey Lagunin, Micha Rautenberg, Barry J. Hardy:
OpenTox predictive toxicology framework: toxicological ontology and semantic media wiki-based OpenToxipedia. J. Biomed. Semant. 3(S-1): S7 (2012) - 2010
- [j12]Boris Sobolev, Dmitry Filimonov, Alexey Lagunin, Alexey V. Zakharov, Olga Koborova, Alexander E. Kel, Vladimir Poroikov:
Functional classification of proteins based on projection of amino acid sequences: application for prediction of protein kinase substrates. BMC Bioinform. 11: 313 (2010) - [j11]Barry J. Hardy, Nicki Douglas, Christoph Helma, Micha Rautenberg, Nina Jeliazkova, Vedrin Jeliazkov, Ivelina Nikolova, Romualdo Benigni, Olga Tcheremenskaia, Stefan Kramer, Tobias Girschick, Fabian Buchwald, Jörg Wicker, Andreas Karwath, Martin Gütlein, Andreas Maunz, Haralambos Sarimveis, Georgia Melagraki, Antreas Afantitis, Pantelis Sopasakis, David Gallagher, Vladimir Poroikov, Dmitry Filimonov, Alexey V. Zakharov, Alexey Lagunin, Tatyana Gloriozova, Sergey Novikov, Natalia Skvortsova, Dmitry S. Druzhilovskiy, Sunil Chawla, Indira Ghosh, Surajit Ray, Hitesh Patel, Sylvia Escher:
Collaborative development of predictive toxicology applications. J. Cheminformatics 2: 7 (2010)
2000 – 2009
- 2008
- [j10]Kirill Alexandrov, Boris Sobolev, Dmitry Filimonov, Vladimir Poroikov:
Recognition of protein Function Using the Local Similarity. J. Bioinform. Comput. Biol. 6(4): 709-725 (2008) - 2007
- [j9]Fedor A. Kolpakov, Vladimir Poroikov, Ruslan N. Sharipov, Yury V. Kondrakhin, Alexey V. Zakharov, Alexey Lagunin, Luciano Milanesi, Alexander E. Kel:
CYCLONET - an integrated database on cell cycle regulation and carcinogenesis. Nucleic Acids Res. 35(Database-Issue): 550-556 (2007) - 2005
- [j8]Dmitry Filimonov, Vladimir Poroikov:
Why relevant chemical information cannot be exchanged without disclosing structures. J. Comput. Aided Mol. Des. 19(9-10): 705-713 (2005) - 2004
- [j7]Yulia V. Borodina, Anastasia V. Rudik, Dmitrii Filimonov, N. Kharchevnikova, Alexander V. Dmitriev, V. Blinova, Vladimir Poroikov:
A New Statistical Approach to Predicting Aromatic Hydroxylation Sites. Comparison with Model-Based Approaches. J. Chem. Inf. Model. 44(6): 1998-2009 (2004) - 2003
- [j6]Vladimir Poroikov, Dmitrii Filimonov, Wolf-Dietrich Ihlenfeldt, Tatyana Gloriozova, Alexey Lagunin, Yulia V. Borodina, Alla Stepanchikova, Marc C. Nicklaus:
PASS Biological Activity Spectrum Predictions in the Enhanced Open NCI Database Browser. J. Chem. Inf. Comput. Sci. 43(1): 228-236 (2003) - [j5]Yulia V. Borodina, A. Sadym, Dmitrii Filimonov, V. Blinova, Alexander V. Dmitriev, Vladimir Poroikov:
Predicting Biotransformation Potential from Molecular Structure. J. Chem. Inf. Comput. Sci. 43(5): 1636-1646 (2003) - 2002
- [j4]Vladimir Poroikov, Dmitrii Filimonov:
How to acquire new biological activities in old compounds by computer prediction. J. Comput. Aided Mol. Des. 16(11): 819-824 (2002) - 2000
- [j3]Alexey Lagunin, Alla Stepanchikova, Dmitrii Filimonov, Vladimir Poroikov:
PASS: prediction of activity spectra for biologically active substances. Bioinform. 16(8): 747-748 (2000) - [j2]Vladimir Poroikov, Dmitrii Filimonov, Yulia V. Borodina, A. A. Lagunin, A. Kos:
Robustness of Biological Activity Spectra Predicting by Computer Program PASS for Noncongeneric Sets of Chemical Compounds. J. Chem. Inf. Comput. Sci. 40(6): 1349-1355 (2000)
1990 – 1999
- 1999
- [j1]Dmitrii Filimonov, Vladimir Poroikov, Yulia V. Borodina, Tatyana Gloriozova:
Chemical Similarity Assessment through Multilevel Neighborhoods of Atoms: Definition and Comparison with the Other Descriptors. J. Chem. Inf. Comput. Sci. 39(4): 666-670 (1999)
Coauthor Index
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