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Journal Articles
- 2023
[j14]Miguel A. Soler
, Ozge Ozkilinc, Yamanappa Hunashal, Paolo Giannozzi, Gennaro Esposito, Federico Fogolari:
Molecular electrostatics and pKa shifts calculations with the Generalized Born model. A tutorial through examples with Bluues2. Comput. Phys. Commun. 287: 108716 (2023)- 2020
- [j13]Saida S. Mohamed, Gennaro Esposito, Giuseppe Serra, Federico Fogolari:
Generalized Born radii computation using linear models and neural networks. Bioinform. 36(6): 1757-1764 (2020) - 2018
- [j12]Federico Fogolari, Ornela Maloku, Cedrix Jurgal Dongmo Foumthuim, Alessandra Corazza, Gennaro Esposito:
PDB2ENTROPY and PDB2TRENT: Conformational and Translational-Rotational Entropy from Molecular Ensembles. J. Chem. Inf. Model. 58(7): 1319-1324 (2018) - 2016
- [j11]Fabrizio Serra, Chiara Romualdi, Federico Fogolari:
Similarity Measures Based on the Overlap of Ranked Genes Are Effective for Comparison and Classification of Microarray Data. J. Comput. Biol. 23(7): 603-614 (2016) - 2015
- [j10]Federico Fogolari, Alessandra Corazza, Gennaro Esposito:
Accuracy assessment of the linear Poisson-Boltzmann equation and reparametrization of the OBC generalized Born model for nucleic acids and nucleic acid-protein complexes. J. Comput. Chem. 36(9): 585-596 (2015) - 2012
- [j9]Federico Fogolari, Alessandra Corazza, Paolo Viglino, Gennaro Esposito:
Fast structure similarity searches among protein models: efficient clustering of protein fragments. Algorithms Mol. Biol. 7: 16 (2012) - [j8]Ian Walsh, Giovanni Minervini, Alessandra Corazza, Gennaro Esposito, Silvio C. E. Tosatto, Federico Fogolari:
Bluues server: electrostatic properties of wild-type and mutated protein structures. Bioinform. 28(16): 2189-2190 (2012) - [j7]Federico Fogolari, Alessandra Corazza, Vijaylakshmi Yarra, Anusha Jalaru, Paolo Viglino, Gennaro Esposito:
Bluues: a program for the analysis of the electrostatic properties of proteins based on generalized Born radii. BMC Bioinform. 13(S-4): S18 (2012) - 2010
- [j6]Alessandro Dal Palù, Agostino Dovier, Federico Fogolari, Enrico Pontelli:
CLP-based protein fragment assembly. Theory Pract. Log. Program. 10(4-6): 709-724 (2010) - 2007
- [j5]Luca Bortolussi, Agostino Dovier, Federico Fogolari:
Agent-based protein structure prediction. Multiagent Grid Syst. 3(2): 183-197 (2007) - 2005
- [j4]Federico Fogolari, Silvio C. E. Tosatto, Giorgio Colombo:
A decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators. BMC Bioinform. 6: 301 (2005) - 2004
- [j3]Alessandro Dal Palù, Agostino Dovier, Federico Fogolari:
Constraint Logic Programming approach to protein structure prediction. BMC Bioinform. 5: 186 (2004) - 2003
- [j2]Marco Berrera, Henriette Molinari, Federico Fogolari:
Amino acid empirical contact energy definitions for fold recognition in the space of contact maps. BMC Bioinform. 4: 8 (2003) - 2001
- [j1]Federico Fogolari, Gennaro Esposito, Paolo Viglino, Henriette Molinari:
Molecular mechanics and dynamics of biomolecules using a solvent continuum model. J. Comput. Chem. 22(15): 1830-1842 (2001)
Conference and Workshop Papers
- 2011
- [c5]Alessandro Dal Palù, Agostino Dovier, Federico Fogolari, Enrico Pontelli:
Exploring Protein Fragment Assembly Using CLP. IJCAI 2011: 2590-2595 - 2010
- [c4]Alessandro Dal Palù, Agostino Dovier, Federico Fogolari, Enrico Pontelli:
CLP-based Protein Fragment Assembly. CILC 2010 - 2004
- [c3]Alessandro Dal Palù, Agostino Dovier, Federico Fogolari:
Protein Folding Simulation in CCP. ICLP 2004: 452-453 - 2003
- [c2]Alessandro Dal Palù, Agostino Dovier, Federico Fogolari:
Protein Folding in CLP(FD) with Empirical Contact Energies. CSCLP 2003: 250-265 - 2002
- [c1]Agostino Dovier, Matteo Burato, Federico Fogolari:
Using Secondary Structure Information for Protein Folding in CLP(FD). WFLP 2002: 83-98
Informal and Other Publications
- 2010
- [i1]Alessandro Dal Palù, Agostino Dovier, Federico Fogolari, Enrico Pontelli:
CLP-based protein fragment assembly. CoRR abs/1007.5180 (2010)
Coauthor Index
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