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2020 – today
- 2021
[c12]Ali Ebrahimpour Boroojeny, Sanjay V. Rajopadhye
, Hamidreza Chitsaz:
BPPart: RNA-RNA Interaction Partition Function in the Absence of Entropy. WABI 2021: 14:1-14:24- 2020
- [j11]Ali Ebrahimpour Boroojeny, Akash Shrestha, Ali Sharifi-Zarchi, Suzanne Renick Gallagher, Süleyman Cenk Sahinalp, Hamidreza Chitsaz:
Graph Traversal Edit Distance and Extensions. J. Comput. Biol. 27(3): 317-329 (2020) - [j10]Ali Ebrahimpour Boroojeny, Akash Shrestha, Ali Sharifi-Zarchi, Suzanne Renick Gallagher, Süleyman Cenk Sahinalp, Hamidreza Chitsaz:
PyGTED: Python Application for Computing Graph Traversal Edit Distance. J. Comput. Biol. 27(3): 436-439 (2020) - [c11]Majdi Khalid, Hamidreza Chitsaz, Indrakshi Ray:
Proximal Stochastic AUC Maximization. IJCNN 2020: 1-8
2010 – 2019
- 2018
- [c10]Majdi Khalid, Indrakshi Ray, Hamidreza Chitsaz:
Scalable Nonlinear AUC Maximization Methods. ECML/PKDD (2) 2018: 292-307 - [c9]Ali Ebrahimpour Boroojeny, Akash Shrestha, Ali Sharifi-Zarchi, Suzanne Renick Gallagher, Süleyman Cenk Sahinalp, Hamidreza Chitsaz:
GTED: Graph Traversal Edit Distance. RECOMB 2018: 37-53 - [i12]Farzad Abdolhosseini, Behrooz Azarkhalili, Abbas Maazallahi, Aryan Kamal, Seyed Abolfazl Motahari, Ali Sharifi-Zarchi, Hamidreza Chitsaz:
Cell Identity Codes: Understanding Cell Identity from Gene Expression Profiles using Deep Neural Networks. CoRR abs/1806.04863 (2018) - [i11]Behrooz Azarkhalili, Ali Saberi, Hamidreza Chitsaz, Ali Sharifi-Zarchi:
Inferring Molecular Pathology and micro-RNA Transcriptome from mRNA Profiles of Cancer Biopsies through Deep Multi-Task Learning. CoRR abs/1808.02237 (2018) - 2017
- [j9]Behrouz Bokharaeian, Alberto Díaz Esteban, Nasrin Taghizadeh, Hamidreza Chitsaz, Ramyar Chavoshinejad:
SNPPhenA: a corpus for extracting ranked associations of single-nucleotide polymorphisms and phenotypes from literature. J. Biomed. Semant. 8(1): 14:1-14:13 (2017) - [c8]Reza Iraji, Hamidreza Chitsaz:
Principal Variety Analysis. CoRL 2017: 97-108 - [i10]Majdi Khalid, Indrakshi Ray, Hamidreza Chitsaz:
AUC Maximization with K-hyperplane. CoRR abs/1710.00760 (2017) - 2016
- [c7]Majdi Khalid, Indrakshi Ray, Hamidreza Chitsaz:
Confidence-Weighted Bipartite Ranking. ADMA 2016: 35-49 - [i9]Majdi Khalid, Indrakshi Ray, Hamidreza Chitsaz:
Confidence-Weighted Bipartite Ranking. CoRR abs/1607.00847 (2016) - [i8]Nancy M. Amato, Charles Anderson, Gregory S. Chirikjian, Hamidreza Chitsaz, Vishnu R. Desaraju, Chinwe Ekenna, Kris K. Hauser, Geoffrey A. Hollinger, Reza Iraji, Minwoo Lee, Qianli Ma, Seth McCammon, Nathan Michael, Shawna L. Thomas, Diane Uwacu, Yan Yan:
Proceedings of the 1st International Workshop on Robot Learning and Planning (RLP 2016). CoRR abs/1610.02573 (2016) - 2015
- [j8]Ali Sharifi-Zarchi, Mehdi Totonchi, Keynoush Khaloughi, Razieh Karamzadeh, Marcos J. Araúzo-Bravo, Hossein Baharvand, Ruzbeh Tusserkani, Hamid Pezeshk, Hamidreza Chitsaz, Mehdi Sadeghi:
Increased robustness of early embryogenesis through collective decision-making by key transcription factors. BMC Syst. Biol. 9: 23 (2015) - [j7]Hamidreza Chitsaz, Mohammad Aminisharifabad:
Exact Learning of RNA Energy Parameters From Structure. J. Comput. Biol. 22(6): 463-473 (2015) - 2014
- [j6]Milad Gholami, Aryan Arbabi, Ali Sharifi-Zarchi, Hamidreza Chitsaz, Mehdi Sadeghi:
ARYANA: Aligning Reads by Yet Another Approach. BMC Bioinform. 15(S-9): S12 (2014) - [c6]Reza Iraji, Hamidreza Chitsaz:
NUROA: A numerical roadmap algorithm. CDC 2014: 5359-5366 - [c5]Hamidreza Chitsaz, Mohammad Aminisharifabad:
Exact Learning of RNA Energy Parameters from Structure. RECOMB 2014: 56-68 - [i7]Reza Iraji, Hamidreza Chitsaz:
NuRA: Numerical Roadmap Algorithm. CoRR abs/1403.5384 (2014) - [i6]Seyed Basir Shariat Razavi, Narjes Sadat Movahedi Tabrizi, Hamidreza Chitsaz, Christina Boucher:
HyDA-Vista: Towards Optimal Guided Selection of k-mer Size for Sequence Assembly. CoRR abs/1408.5592 (2014) - 2013
- [j5]Elmirasadat Forouzmand, Hamidreza Chitsaz:
The RNA Newton polytope and learnability of energy parameters. Bioinform. 29(13): 300-307 (2013) - [j4]Zeinab Taghavi, Narjes S. Movahedi, Sorin Draghici, Hamidreza Chitsaz:
Distilled single-cell genome sequencing and de novo assembly for sparse microbial communities. Bioinform. 29(19): 2395-2401 (2013) - [j3]Hamidreza Chitsaz, Elmirasadat Forouzmand, Gholamreza Haffari:
An Efficient Algorithm for Upper Bound on the Partition Function of Nucleic Acids. J. Comput. Biol. 20(7): 486-494 (2013) - [c4]Hamidreza Chitsaz:
On Time-optimal Trajectories for a Car-like Robot with One Trailer. SIAM Conf. on Control and its Applications 2013: 114-120 - [i5]Hamidreza Chitsaz, Elmirasadat Forouzmand, Gholamreza Haffari:
An Efficient Algorithm for Upper Bound on the Partition Function of Nucleic Acids. CoRR abs/1301.1590 (2013) - [i4]Elmirasadat Forouzmand, Hamidreza Chitsaz:
The RNA Newton Polytope and Learnability of Energy Parameters. CoRR abs/1301.1608 (2013) - [i3]Hamidreza Chitsaz:
On Time-optimal Trajectories for a Car-like Robot with One Trailer. CoRR abs/1301.6662 (2013) - [i2]Zeinab Taghavi, Narjes S. Movahedi, Sorin Draghici, Hamidreza Chitsaz:
Distilled Single Cell Genome Sequencing and De Novo Assembly for Sparse Microbial Communities. CoRR abs/1305.0062 (2013) - [i1]Hamidreza Chitsaz, Mohammad Aminisharifabad:
Exact Learning of RNA Energy Parameters From Structure. CoRR abs/1310.4223 (2013) - 2012
- [j2]Roy Ronen, Christina Boucher, Hamidreza Chitsaz, Pavel A. Pevzner:
SEQuel: improving the accuracy of genome assemblies. Bioinform. 28(12): 188-196 (2012) - [c3]Narjes S. Movahedi, Elmirasadat Forouzmand, Hamidreza Chitsaz:
De novo co-assembly of bacterial genomes from multiple single cells. BIBM 2012: 1-5 - 2010
- [c2]Rolf Backofen, Hamidreza Chitsaz, Ivo L. Hofacker, Süleyman Cenk Sahinalp, Peter F. Stadler:
Session Introduction. Pacific Symposium on Biocomputing 2010: 54-56
2000 – 2009
- 2009
- [j1]Hamidreza Chitsaz, Raheleh Salari, Süleyman Cenk Sahinalp, Rolf Backofen:
A partition function algorithm for interacting nucleic acid strands. Bioinform. 25(12) (2009) - [c1]Hamidreza Chitsaz, Rolf Backofen, Süleyman Cenk Sahinalp:
biRNA: Fast RNA-RNA Binding Sites Prediction. WABI 2009: 25-36
Coauthor Index
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