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2020 – today
- 2023
[i3]Amirhossein Askari-Farsangi, Ali Sharifi-Zarchi, Mohammad Hossein Rohban:
Novel Pipeline for Diagnosing Acute Lymphoblastic Leukemia Sensitive to Related Biomarkers. CoRR abs/2307.04014 (2023)- 2021
- [j8]Zaynab Mousavian
, Mehran Khodabandeh, Ali Sharifi-Zarchi, Alireza Nadafian, Alireza Mahmoudi:
StrongestPath: a Cytoscape application for protein-protein interaction analysis. BMC Bioinform. 22(1): 352 (2021) - 2020
- [j7]Etminan Naznooshsadat, Elham Parvinnia, Ali Sharifi-Zarchi:
FAME: fast and memory efficient multiple sequences alignment tool through compatible chain of roots. Bioinform. 36(12): 3662-3668 (2020) - [j6]Ali Ebrahimpour Boroojeny, Akash Shrestha, Ali Sharifi-Zarchi, Suzanne Renick Gallagher, Süleyman Cenk Sahinalp, Hamidreza Chitsaz:
Graph Traversal Edit Distance and Extensions. J. Comput. Biol. 27(3): 317-329 (2020) - [j5]Ali Ebrahimpour Boroojeny, Akash Shrestha, Ali Sharifi-Zarchi, Suzanne Renick Gallagher, Süleyman Cenk Sahinalp, Hamidreza Chitsaz:
PyGTED: Python Application for Computing Graph Traversal Edit Distance. J. Comput. Biol. 27(3): 436-439 (2020)
2010 – 2019
- 2019
- [j4]Hosein Fooladi, Parsa Moradi, Ali Sharifi-Zarchi, Babak Hossein Khalaj:
Enhanced Waddington landscape model with cell-cell communication can explain molecular mechanisms of self-organization. Bioinform. 35(20): 4081-4088 (2019) - [j3]Mahroo Moridi, Marzieh Ghadirinia, Ali Sharifi-Zarchi, Fatemeh Zare-Mirakabad:
The assessment of efficient representation of drug features using deep learning for drug repositioning. BMC Bioinform. 20(1): 577:1-577:11 (2019) - 2018
- [c1]Ali Ebrahimpour Boroojeny, Akash Shrestha, Ali Sharifi-Zarchi, Suzanne Renick Gallagher, Süleyman Cenk Sahinalp, Hamidreza Chitsaz:
GTED: Graph Traversal Edit Distance. RECOMB 2018: 37-53 - [i2]Farzad Abdolhosseini, Behrooz Azarkhalili, Abbas Maazallahi, Aryan Kamal, Seyed Abolfazl Motahari, Ali Sharifi-Zarchi, Hamidreza Chitsaz:
Cell Identity Codes: Understanding Cell Identity from Gene Expression Profiles using Deep Neural Networks. CoRR abs/1806.04863 (2018) - [i1]Behrooz Azarkhalili, Ali Saberi, Hamidreza Chitsaz, Ali Sharifi-Zarchi:
Inferring Molecular Pathology and micro-RNA Transcriptome from mRNA Profiles of Cancer Biopsies through Deep Multi-Task Learning. CoRR abs/1808.02237 (2018) - 2015
- [j2]Ali Sharifi-Zarchi, Mehdi Totonchi, Keynoush Khaloughi, Razieh Karamzadeh, Marcos J. Araúzo-Bravo, Hossein Baharvand, Ruzbeh Tusserkani, Hamid Pezeshk, Hamidreza Chitsaz, Mehdi Sadeghi:
Increased robustness of early embryogenesis through collective decision-making by key transcription factors. BMC Syst. Biol. 9: 23 (2015) - 2014
- [j1]Milad Gholami, Aryan Arbabi, Ali Sharifi-Zarchi, Hamidreza Chitsaz, Mehdi Sadeghi:
ARYANA: Aligning Reads by Yet Another Approach. BMC Bioinform. 15(S-9): S12 (2014)
Coauthor Index
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