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ORCIDRaheleh Salari
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2010 – 2019
- 2014
[i1]Victoria Popic, Raheleh Salari, Iman Hajirasouliha, Dorna Kashef Haghighi, Robert B. West, Serafim Batzoglou:
Fast and Scalable Inference of Multi-Sample Cancer Lineages. CoRR abs/1412.8574 (2014)- 2013
- [j10]Raheleh Salari, Syed Shayon Saleh, Dorna Kashef Haghighi, David Khavari, Daniel E. Newburger, Robert B. West
, Arend Sidow, Serafim Batzoglou:
Inference of Tumor Phylogenies with Improved Somatic Mutation Discovery. J. Comput. Biol. 20(11): 933-944 (2013) - [c8]Yoo-Ah Kim, Raheleh Salari, Stefan Wuchty, Teresa M. Przytycka:
Module Cover - A New Approach to Genotype-Phenotype Studies. Pacific Symposium on Biocomputing 2013: 135-146 - [c7]Raheleh Salari, Syed Shayon Saleh, Dorna Kashef Haghighi, David Khavari, Daniel E. Newburger, Robert B. West, Arend Sidow, Serafim Batzoglou:
Inference of Tumor Phylogenies with Improved Somatic Mutation Discovery. RECOMB 2013: 249-263 - 2012
- [j9]Raheleh Salari, Damian Wójtowicz, Jie Zheng, David Levens, Yitzhak Pilpel, Teresa M. Przytycka:
Teasing Apart Translational and Transcriptional Components of Stochastic Variations in Eukaryotic Gene Expression. PLoS Comput. Biol. 8(8) (2012) - [c6]Raheleh Salari, Chava Kimchi-Sarfaty, Michael M. Gottesman, Teresa M. Przytycka:
Detecting SNP-Induced Structural Changes in RNA: Application to Disease Studies. RECOMB 2012: 241-243 - 2010
- [j8]Raheleh Salari, Rolf Backofen, Süleyman Cenk Sahinalp:
Fast prediction of RNA-RNA interaction. Algorithms Mol. Biol. 5: 5 (2010) - [j7]Mathias Möhl, Raheleh Salari, Sebastian Will, Rolf Backofen, Süleyman Cenk Sahinalp:
Sparsification of RNA structure prediction including pseudoknots. Algorithms Mol. Biol. 5: 39 (2010) - [j6]Phuong Dao, Recep Colak, Raheleh Salari, Flavia Moser, Elai Davicioni, Alexander Schönhuth, Martin Ester:
Inferring cancer subnetwork markers using density-constrained biclustering. Bioinform. 26(18) (2010) - [j5]Alexander Schönhuth, Raheleh Salari, Fereydoun Hormozdiari, Artem Cherkasov, Süleyman Cenk Sahinalp:
Towards Improved Assessment of Functional Similarity in Large-Scale Screens: A Study on Indel Length. J. Comput. Biol. 17(1): 1-20 (2010) - [j4]Fereydoun Hormozdiari, Raheleh Salari, Vineet Bafna, Süleyman Cenk Sahinalp:
Protein-Protein Interaction Network Evaluation for Identifying Potential Drug Targets. J. Comput. Biol. 17(5): 669-684 (2010) - [c5]Raheleh Salari, Mathias Möhl, Sebastian Will, Süleyman Cenk Sahinalp, Rolf Backofen:
Time and Space Efficient RNA-RNA Interaction Prediction via Sparse Folding. RECOMB 2010: 473-490 - [c4]Mathias Möhl, Raheleh Salari, Sebastian Will, Rolf Backofen, Süleyman Cenk Sahinalp:
Sparsification of RNA Structure Prediction Including Pseudoknots. WABI 2010: 40-51 - [c3]Alexander Schönhuth, Raheleh Salari, Süleyman Cenk Sahinalp:
Pair HMM Based Gap Statistics for Re-evaluation of Indels in Alignments with Affine Gap Penalties. WABI 2010: 350-361
2000 – 2009
- 2009
- [j3]Hamidreza Chitsaz, Raheleh Salari, Süleyman Cenk Sahinalp, Rolf Backofen:
A partition function algorithm for interacting nucleic acid strands. Bioinform. 25(12) (2009) - [j2]Fereydoun Hormozdiari, Raheleh Salari, Michael Hsing, Alexander Schönhuth, Simon K. Chan, Süleyman Cenk Sahinalp, Artem Cherkasov:
The Effect of Insertions and Deletions on Wirings in Protein-Protein Interaction Networks: A Large-Scale Study. J. Comput. Biol. 16(2): 159-167 (2009) - [c2]Raheleh Salari, Rolf Backofen, Süleyman Cenk Sahinalp:
Fast Prediction of RNA-RNA Interaction. WABI 2009: 261-272 - 2008
- [c1]Raheleh Salari, Alexander Schönhuth, Fereydoun Hormozdiari, Artem Cherkasov, Süleyman Cenk Sahinalp:
The Relation between Indel Length and Functional Divergence: A Formal Study. WABI 2008: 330-341 - 2007
- [j1]Cagri Aksay, Raheleh Salari, Emre Karakoç, Can Alkan, Süleyman Cenk Sahinalp:
taveRNA: a web suite for RNA algorithms and applications. Nucleic Acids Res. 35(Web-Server-Issue): 325-329 (2007)
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