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2020 – today
- 2023
[j14]Ramin Homayouni, Prashanti Manda, Aik Choon Tan
, Zhaohui S. Qin:
Editorial: AI and data science in drug development and public health: Highlights from the MCBIOS 2022 conference. Frontiers Big Data 6 (2023)- [c13]Pratik Devkota, Somya D. Mohanty, Prashanti Manda:
Ontology-Powered Boosting for Improved Recognition of Ontology Concepts from Biological Literature. BIOINFORMATICS 2023: 80-90 - [c12]Pratik Devkota, Somya D. Mohanty, Prashanti Manda:
Using Ontology Embeddings With Deep Learning Architectures to Improve Prediction of Ontology Concepts From Literature. ICBO 2023: 118-129 - 2022
- [j13]Pratik Devkota, Somya D. Mohanty, Prashanti Manda:
A Gated Recurrent Unit based architecture for recognizing ontology concepts from biological literature. BioData Min. 15(1) (2022) - [j12]Ramin Homayouni, Huixiao Hong, Prashanti Manda, Bindu Nanduri, Inimary T. Toby:
Editorial: Unleashing Innovation on Precision Public Health-Highlights From the MCBIOS and MAQC 2021 Joint Conference. Frontiers Artif. Intell. 5: 859700 (2022) - [j11]Somya D. Mohanty, Deborah Lekan, Thomas P. McCoy, Marjorie Jenkins, Prashanti Manda:
Machine learning for predicting readmission risk among the frail: Explainable AI for healthcare. Patterns 3(1): 100395 (2022) - [c11]Pratik Devkota, Somya D. Mohanty, Prashanti Manda:
Knowledge of the Ancestors: Intelligent Ontology-aware Annotation of Biological Literature using Semantic Similarity. ICBO 2022: 1-10 - 2020
- [j10]Prashanti Manda:
Data mining powered by the gene ontology. WIREs Data Mining Knowl. Discov. 10(3) (2020) - [c10]Somya D. Mohanty, Thomas P. McCoy, Prashanti Manda, Deborah Lekan, Marjorie Jenkins:
A multi-modal machine learning approach towards predicting patient readmission. BIBM 2020: 2027-2035 - [c9]Prashanti Manda, Saed SayedAhmed, Somya D. Mohanty:
Automated ontology-based annotation of scientific literature using deep learning. SBD@SIGMOD 2020: 5:1-5:6
2010 – 2019
- 2019
- [j9]Jonathan D. Wren, Robert J. Doerksen, Inimary T. Toby, Bindu Nanduri, Ramin Homayouni, Prashanti Manda, Shraddha Thakkar:
Proceedings of the 2018 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) conference. BMC Bioinform. 20-S(2): 95:1-95:5 (2019) - [j8]Prashanti Manda, Alexander Hahn, Katherine Beekman, Todd J. Vision:
Avoiding "conflicts of interest": a computational approach to scheduling parallel conference tracks and its human evaluation. PeerJ Comput. Sci. 5: e234 (2019) - [c8]Prashanti Manda:
Ontology-powered Semantic Similarity of Biological and Biomedical Entities - The Story So Far, and The Road Ahead. BIOINFORMATICS 2019: 216-225 - [i3]Prashanti Manda, Alexander Hahn, Katherine Lamm, Scott Provan, Todd J. Vision:
Avoiding "conflicts of interest": A computational approach to scheduling parallel conference tracks and its human evaluation. PeerJ Prepr. 7: e27496 (2019) - 2018
- [j7]Wasila M. Dahdul, Prashanti Manda, Hong Cui, James P. Balhoff, T. Alexander Dececchi, Nizar Ibrahim, Hilmar Lapp, Todd J. Vision, Paula M. Mabee:
Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems. Database J. Biol. Databases Curation 2018: bay110 (2018) - [c7]Lucas Beasley, Prashanti Manda:
Comparison of Natural Language Processing Tools for Automatic Gene Ontology Annotation of Scientific Literature. ICBO 2018 - [c6]Prashanti Manda, Lucas Beasley, Somya D. Mohanty:
Taking a Dive: Experiments in Deep Learning for Automatic Ontology-Based Annotation of Scientific Literature. ICBO 2018 - [c5]Prashanti Manda, Todd J. Vision:
On the Statistical Sensitivity of Semantic Similarity Metrics. ICBO 2018 - [p1]Paula M. Mabee, Wasila M. Dahdul, James P. Balhoff, Hilmar Lapp, Prashanti Manda, Josef C. Uyeda, Todd J. Vision, Monte Westerfield:
Phenoscape: Semantic analysis of organismal traits and genes yields insights in evolutionary biology. Application of Semantic Technology in Biodiversity Science 2018: 207-224 - [i2]Lucas Beasley, Prashanti Manda:
Comparison of natural language processing tools for automatic gene ontology annotation of scientific literature. PeerJ Prepr. 6: e27028 (2018) - 2017
- [j6]Jonathan D. Wren, Mikhail G. Dozmorov, Inimary T. Toby, Bindu Nanduri, Ramin Homayouni, Prashanti Manda, Shraddha Thakkar:
Proceedings of the 2017 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. BMC Bioinform. 18(14): 498:1-498:5 (2017) - [c4]Alexander Hahn, Somya D. Mohanty, Prashanti Manda:
What's Hot and What's Not? - Exploring Trends in Bioinformatics Literature Using Topic Modeling and Keyword Analysis. ISBRA 2017: 279-290 - [c3]Prashanti Manda, Todd J. Vision:
Evolution of anatomical concept usage over time: mining 200 years of biodiversity literature. SBD@SIGMOD 2017: 4:1-4:6 - 2016
- [j5]Anika Oellrich, Nigel Collier, Tudor Groza, Dietrich Rebholz-Schuhmann, Nigam Shah, Olivier Bodenreider, Mary Regina Boland, Ivo I. Georgiev, Hongfang Liu, Kevin M. Livingston, Augustin Luna, Ann-Marie Mallon, Prashanti Manda, Peter N. Robinson, Gabriella Rustici, Michelle Simon, Liqin Wang, Rainer Winnenburg, Michel Dumontier:
The digital revolution in phenotyping. Briefings Bioinform. 17(5): 819-830 (2016) - [c2]Prashanti Manda, James P. Balhoff, Todd J. Vision:
Measuring the Importance of Annotation Granularity to the Detection of Semantic Similarity Between Phenotype Profiles. ICBO/BioCreative 2016 - [c1]Prashanti Manda, Christopher J. Mungall, James P. Balhoff, Hilmar Lapp, Todd J. Vision:
Investigating the Importance of Anatomical Homology for Cross-Species Phenotype Comparisons Using Semantic Similarity. PSB 2016: 132-143 - 2015
- [i1]Prashanti Manda, Fiona M. McCarthy, Bindu Nanduri, Susan M. Bridges:
Information Theoretic Interestingness Measures for Cross-Ontology Data Mining in the Mouse Anatomy Ontology and the Gene Ontology. CoRR abs/1504.08027 (2015) - 2013
- [j4]Prashanti Manda, Fiona M. McCarthy, Susan M. Bridges:
Interestingness measures and strategies for mining multi-ontology multi-level association rules from gene ontology annotations for the discovery of new GO relationships. J. Biomed. Informatics 46(5): 849-856 (2013) - 2011
- [j3]Fiona M. McCarthy, Cathy R. Gresham, Teresia J. Buza, Philippe Chouvarine, Lakshmi R. Pillai, Ranjit Kumar, Seval Ozkan, Hui Wang, Prashanti Manda, Tony Arick, Susan M. Bridges, Shane C. Burgess:
AgBase: supporting functional modeling in agricultural organisms. Nucleic Acids Res. 39(Database-Issue): 497-506 (2011) - 2010
- [j2]Prashanti Manda, McKinley G. Freeman, Susan M. Bridges, T. J. Jankun-Kelly, Bindu Nanduri, Fiona M. McCarthy, Shane C. Burgess:
GOModeler- A tool for hypothesis-testing of functional genomics datasets. BMC Bioinform. 11(S-6): S29 (2010)
2000 – 2009
- 2009
- [j1]Bart H. J. van den Berg, Chamali Thanthiriwatte, Prashanti Manda, Susan M. Bridges:
Comparing gene annotation enrichment tools for functional modeling of agricultural microarray data. BMC Bioinform. 10(S-11): 9 (2009)
Coauthor Index
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