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ORCIDMehmet Serkan Apaydin
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Journal Articles
- 2016
[j6]SeymaÇetnIkaya, Seyma Nur Ekren, Mehmet Serkan Apaydin
:
Progress in Nuclear Vector Replacement for NMR Protein Structure-Based Assignments. RAIRO Oper. Res. 50(2): 341-349 (2016)- 2015
- [j5]Murodzhon Akhmedov, Bülent Çatay, Mehmet Serkan Apaydin:
Automating unambiguous NOE data usage in NVR for NMR protein structure-based assignments. J. Bioinform. Comput. Biol. 13(6): 1550020:1-1550020:14 (2015) - 2012
- [j4]Gizem Çavuslar, Bülent Çatay, Mehmet Serkan Apaydin:
A Tabu Search Approach for the NMR Protein Structure-Based Assignment Problem. IEEE ACM Trans. Comput. Biol. Bioinform. 9(6): 1621-1628 (2012) - 2011
- [j3]Mehmet Serkan Apaydin, Bülent Çatay, Nicholas Patrick, Bruce Randall Donald:
NVR-BIP: Nuclear Vector Replacement using Binary Integer Programming for NMR Structure-Based Assignments. Comput. J. 54(5): 708-716 (2011) - 2007
- [j2]Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe:
Using Stochastic Roadmap Simulation to Predict Experimental Quantities in Protein Folding Kinetics: Folding Rates and Phi-Values. J. Comput. Biol. 14(5): 578-593 (2007) - 2003
- [j1]Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe, Chris Varma:
Stochastic Roadmap Simulation: An Efficient Representation and Algorithm for Analyzing Molecular Motion. J. Comput. Biol. 10(3/4): 257-281 (2003)
Conference and Workshop Papers
- 2023
- [c15]Veli Mustafa Yönder, Emre Ipek, Tarik Çetin, Hasan Burak Çavka, Mehmet Serkan Apaydin, Fehmi Dogan:
Classification of Turkish and Balkan House Architectures Using Transfer Learning and Deep Learning. ICIAP Workshops (2) 2023: 398-408 - 2018
- [c14]Umut Can Çakmak, Bülent Çatay, Mehmet Serkan Apaydin:
A neural network approach for predicting speeds on road networks. SIU 2018: 1-4 - 2017
- [c13]Umut Can Çakmak, Mehmet Serkan Apaydin, Bülent Çatay:
Traffic Speed Prediction with Neural Networks. OR 2017: 737-743 - 2014
- [c12]Seyma Nur Ekren, Mehmet Serkan Apaydin:
Incorporating triple resonance experiment data into NVR for NMR protein structure-based assignments. SIU 2014: 1926-1929 - 2013
- [c11]Jeyhun Aslanov, Bülent Çatay, Mehmet Serkan Apaydin:
An ant colony optimization approach for solving the nuclear magnetic resonance structure based assignment problem. GECCO (Companion) 2013: 1609-1616 - [c10]Murodzhon Akhmedov, Bülent Çatay, Mehmet Serkan Apaydin:
Distinguishing the type of NOE for NMR protein Structure-Based Assignments. SIU 2013: 1-4 - 2010
- [c9]Mehmet Çagri Çalpur, Hakan Erdogan, Bülent Çatay, Bruce Randall Donald, Mehmet Serkan Apaydin:
Developing a Scoring Function for NMR Structure-based Assignments using Machine Learning. ISCIS 2010: 87-90 - 2009
- [c8]Mehmet Serkan Apaydin, Bülent Çatay, Nicholas Patrick, Bruce Randall Donald:
NVR-BIP: Nuclear vector replacement using binary integer programming for NMR structure-based assignments. ISCIS 2009: 177-182 - 2006
- [c7]Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe:
Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation. RECOMB 2006: 410-424 - 2002
- [c6]Mehmet Serkan Apaydin, Carlos Guestrin, Chris Varma, Douglas L. Brutlag, Jean-Claude Latombe:
Stochastic roadmap simulation for the study of ligand-protein interactions. ECCB 2002: 18-26 - [c5]Douglas L. Brutlag, Mehmet Serkan Apaydin, Carlos Guestrin, David Hsu, Chris Varma, Amit Pal Singh, Jean-Claude Latombe:
Using robotics to fold proteins and dock ligands. ECCB 2002: 74-74 - [c4]Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe:
Stochastic roadmap simulation: an efficient representation and algorithm for analyzing molecular motion. RECOMB 2002: 12-21 - [c3]Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe:
Stochastic Conformational Roadmaps for Computing Ensemble Properties of Molecular Motion. WAFR 2002: 131-148 - 2001
- [c2]Mehmet Serkan Apaydin, Amit Pal Singh, Douglas L. Brutlag, Jean-Claude Latombe:
Capturing Molecular Energy Landscapes with Probabilistic Conformational Roadmaps. ICRA 2001: 932-939 - [c1]Richard Beigel, Noga Alon, Simon Kasif, Mehmet Serkan Apaydin, Lance Fortnow:
An optimal procedure for gap closing in whole genome shotgun sequencing. RECOMB 2001: 22-30
Coauthor Index
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