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ORCIDTania Tudorache
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- affiliation: Stanford University, Stanford Center for Biomedical Informatics Research, USA
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Journal Articles
- 2022
[j21]Nicolas Matentzoglu
, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall:
A Simple Standard for Sharing Ontological Mappings (SSSOM). Database J. Biol. Databases Curation 2022(2022) (2022)- 2020
- [j20]Axel Polleres, Maulik R. Kamdar, Javier D. Fernández, Tania Tudorache, Mark A. Musen:
A more decentralized vision for Linked Data. Semantic Web 11(1): 101-113 (2020) - [j19]Tania Tudorache:
Ontology engineering: Current state, challenges, and future directions. Semantic Web 11(1): 125-138 (2020) - 2019
- [j18]Maulik R. Kamdar, Javier D. Fernández, Axel Polleres, Tania Tudorache, Mark A. Musen:
Enabling Web-scale data integration in biomedicine through Linked Open Data. npj Digit. Medicine 2 (2019) - [j17]Anna Lisa Gentile, Tania Tudorache:
The 2nd U.S. Semantic Technologies Symposium (US2TS 2019). Semantic Web 10(4): 631-635 (2019) - 2018
- [j16]Agnieszka Lawrynowicz, Jedrzej Potoniec, Michal Robaczyk, Tania Tudorache:
Discovery of emerging design patterns in ontologies using tree mining. Semantic Web 9(4): 517-544 (2018) - [j15]Maulik R. Kamdar, Simon Walk, Tania Tudorache, Mark A. Musen:
Analyzing user interactions with biomedical ontologies: A visual perspective. J. Web Semant. 49: 16-30 (2018) - 2017
- [j14]Yun Lou, Samson W. Tu, Csongor Nyulas, Tania Tudorache, Robert J. G. Chalmers, Mark A. Musen:
Use of ontology structure and Bayesian models to aid the crowdsourcing of ICD-11 sanctioning rules. J. Biomed. Informatics 68: 20-34 (2017) - [j13]Christopher Ochs, Yehoshua Perl, James Geller, Sivaram Arabandi, Tania Tudorache, Mark A. Musen:
An empirical analysis of ontology reuse in BioPortal. J. Biomed. Informatics 71: 165-177 (2017) - [j12]Maulik R. Kamdar, Tania Tudorache, Mark A. Musen:
A systematic analysis of term reuse and term overlap across biomedical ontologies. Semantic Web 8(6): 853-871 (2017) - 2016
- [j11]Hasti Ziaimatin, Tudor Groza, Tania Tudorache, Jane Hunter:
Modelling expertise at different levels of granularity using semantic similarity measures in the context of collaborative knowledge-curation platforms. J. Intell. Inf. Syst. 47(3): 469-490 (2016) - 2015
- [j10]Tudor Groza, Tania Tudorache, Peter N. Robinson, Andreas Zankl:
Capturing domain knowledge from multiple sources: the rare bone disorders use case. J. Biomed. Semant. 6: 21 (2015) - [j9]Hao Wang, Tania Tudorache, Dejing Dou, Natalya Fridman Noy, Mark A. Musen:
Analysis and Prediction of User Editing Patterns in Ontology Development Projects. J. Data Semant. 4(2): 117-132 (2015) - [j8]Daniel Lamprecht, Markus Strohmaier, Denis Helic, Csongor Nyulas, Tania Tudorache, Natalya Fridman Noy, Mark A. Musen:
Using ontologies to model human navigation behavior in information networks: A study based on Wikipedia. Semantic Web 6(4): 403-422 (2015) - 2014
- [j7]Matthew Horridge, Tania Tudorache, Csongor Nyulas, Jennifer Vendetti, Natalya Fridman Noy, Mark A. Musen:
WebProtégé: a collaborative Web-based platform for editing biomedical ontologies. Bioinform. 30(16): 2384-2385 (2014) - [j6]Simon Walk, Philipp Singer, Markus Strohmaier, Tania Tudorache, Mark A. Musen, Natalya Fridman Noy:
Discovering Beaten Paths in Collaborative Ontology-Engineering Projects using Markov Chains. J. Biomed. Informatics 51: 254-271 (2014) - 2013
- [j5]Simon Walk, Jan Pöschko, Markus Strohmaier, Keith Andrews, Tania Tudorache, Natalya Fridman Noy, Csongor Nyulas, Mark A. Musen:
PragmatiX: An Interactive Tool for Visualizing the Creation Process Behind Collaboratively Engineered Ontologies. Int. J. Semantic Web Inf. Syst. 9(1): 45-78 (2013) - [j4]Tudor Groza, Tania Tudorache, Michel Dumontier:
State of the art and open challenges in community-driven knowledge curation. J. Biomed. Informatics 46(1): 1-4 (2013) - [j3]Tania Tudorache, Csongor Nyulas, Natalya Fridman Noy, Mark A. Musen:
WebProtégé: A collaborative ontology editor and knowledge acquisition tool for the Web. Semantic Web 4(1): 89-99 (2013) - [j2]Markus Strohmaier, Simon Walk, Jan Pöschko, Daniel Lamprecht, Tania Tudorache, Csongor Nyulas, Mark A. Musen, Natalya Fridman Noy:
How ontologies are made: Studying the hidden social dynamics behind collaborative ontology engineering projects. J. Web Semant. 20: 18-34 (2013) - 2011
- [j1]Patricia L. Whetzel, Natalya Fridman Noy, Nigam H. Shah, Paul R. Alexander, Csongor Nyulas, Tania Tudorache, Mark A. Musen:
BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications. Nucleic Acids Res. 39(Web-Server-Issue): 541-545 (2011)
Conference and Workshop Papers
- 2020
- [c44]Samson W. Tu, Csongor Nyulas, Tania Tudorache, Mark A. Musen, Andrea Martinuzzi, Coen H. van Gool, Vincenzo Della Mea, Christopher G. Chute, Lucilla Frattura, Nicholas R. Hardiker, Huib ten Napel, Richard Madden, Ann-Helene Almborg, Jeewani Anupama Ginige, Catherine Sykes, Can Çelik, Robert Jakob:
Toward a Harmonized WHO Family of International Classifications Content Model. AMIA 2020 - [c43]Samson W. Tu, Csongor I. Nyulas, Tania Tudorache, Mark A. Musen, Andrea Martinuzzi, Coen H. van Gool, Vincenzo Della Mea, Christopher G. Chute, Lucilla Frattura, Nick Hardiker, Huib ten Napel, Richard Madden, Ann-Helene Almborg, Jeewani Anupama Ginige, Catherine Sykes, Can Celik, Robert Jakob:
Toward a Harmonized WHO Family of International Classifications Content Model. MIE 2020: 1409-1410 - 2019
- [c42]Matthew Horridge, Rafael S. Gonçalves, Csongor I. Nyulas, Tania Tudorache, Mark A. Musen:
WebProtégé: A Cloud-Based Ontology Editor. WWW (Companion Volume) 2019: 686-689 - 2018
- [c41]Matthew Horridge, Rafael S. Gonçalves, Csongor I. Nyulas, Tania Tudorache, Mark A. Musen:
Protégé 5.5 - Improvements for Editing Biomedical Ontologies. ICBO 2018 - [c40]Konstantin Schekotihin, Patrick Rodler, Wolfgang Schmid, Matthew Horridge, Tania Tudorache:
Test-Driven Ontology Development in Protégé. ICBO 2018 - [c39]Konstantin Schekotihin, Patrick Rodler, Wolfgang Schmid, Matthew Horridge, Tania Tudorache:
A Protégé Plug-In for Test-Driven Ontology Development. ICBO 2018 - [c38]Matthew Horridge, Rafael S. Gonçalves, Csongor I. Nyulas, Tania Tudorache, Mark A. Musen:
WebProtégé 3.0 - Collaborative OWL Ontology Engineering in the Cloud. ISWC (P&D/Industry/BlueSky) 2018 - [c37]Axel Polleres, Maulik R. Kamdar, Javier D. Fernández, Tania Tudorache, Mark A. Musen:
A More Decentralized Vision for Linked Data. DeSemWeb@ISWC 2018 - 2017
- [c36]Maulik R. Kamdar, Simon Walk, Tania Tudorache, Mark A. Musen:
BiOnIC: A Catalog of User Interactions with Biomedical Ontologies. ISWC (2) 2017: 130-138 - 2016
- [c35]Simon Walk, Tania Tudorache, Mark A. Musen:
Visualizing User Editing Behavior in Collaborative Ontology-engineering Projects. VOILA@ISWC 2016: 68-79 - 2015
- [c34]Samson W. Tu, Csongor Nyulas, Tania Tudorache, Mark A. Musen:
A Method to Compare ICF and SNOMED CT for Coverage of U.S. Social Security Administration's Disability Listing Criteria. AMIA 2015 - [c33]Yuhao Zhang, Tania Tudorache, Matthew Horridge, Mark A. Musen:
Helping Users Bootstrap Ontologies: An Empirical Investigation. CHI 2015: 3395-3398 - [c32]Maulik R. Kamdar, Tania Tudorache, Mark A. Musen:
Investigating term reuse and overlap in biomedical ontologies. ICBO 2015 - [c31]Csongor I. Nyulas, Samson W. Tu, Tania Tudorache, Mark A. Musen:
Modeling and tools for supporting post-coordination in ICD-11. ICBO 2015 - [c30]Simon Walk, Philipp Singer, Lisette Espin Noboa, Tania Tudorache, Mark A. Musen, Markus Strohmaier:
Understanding How Users Edit Ontologies: Comparing Hypotheses About Four Real-World Projects. ISWC (1) 2015: 551-568 - 2014
- [c29]Vincent Lou, Samson W. Tu, Csongor Nyulas, Tania Tudorache, Robert J. G. Chalmers, Mark A. Musen:
Crowdsourcing ICD-11 Sanctioning Rules. AMIA 2014 - [c28]Marco Rospocher, Tania Tudorache, Mark A. Musen:
Investigating Collaboration Dynamics in Different Ontology Development Environments. KSEM 2014: 302-313 - [c27]Matthew Horridge, Tania Tudorache, Csongor Nyulas, Mark A. Musen:
WebProtégé: a Web-based Development Environment for OWL Ontologies. OWLED 2014: 109-120 - 2013
- [c26]Matthew Horridge, Jonathan Mortensen, Tania Tudorache, Jennifer Vendetti, Csongor Nyulas, Mark A. Musen, Natalya Fridman Noy:
Introducing WebProtégé 2 as a Collaborative Platform for Editing Biomedical Ontologies. ICBO 2013: 138-139 - [c25]Hao Wang, Tania Tudorache, Dejing Dou, Natalya Fridman Noy, Mark A. Musen:
Analysis of User Editing Patterns in Ontology Development Projects. OTM Conferences 2013: 470-487 - [c24]Matthew Horridge, Timothy Redmond, Tania Tudorache, Mark A. Musen:
Binary OWL. OWLED 2013 - [c23]Tania Tudorache, Csongor Nyulas, Natalya Fridman Noy, Mark A. Musen:
Using Semantic Web in ICD-11: Three Years Down the Road. ISWC (2) 2013: 195-211 - [c22]Matthew Horridge, Tania Tudorache, Jennifer Vendetti, Csongor Nyulas, Mark A. Musen, Natalya Fridman Noy:
Simplified OWL Ontology Editing for the Web: Is WebProtégé Enough? ISWC (1) 2013: 200-215 - 2012
- [c21]Jan Pöschko, Markus Strohmaier, Tania Tudorache, Natalya Fridman Noy, Mark A. Musen:
Pragmatic Analysis of Crowd-Based Knowledge Production Systems with iCAT Analytics: Visualizing Changes to the ICD-11 Ontology. AAAI Spring Symposium: Wisdom of the Crowd 2012 - [c20]Simon Walk, Markus Strohmaier, Tania Tudorache, Natalya Fridman Noy, Csongor Nyulas, Mark A. Musen:
Recommending Concepts to Experts: An Exploration of Recommender Techniques for Collaborative Ontology Engineering Platforms in the Biomedical Domain. ICBO 2012 - [c19]Csongor Nyulas, Tania Tudorache, Samson W. Tu:
The Template Instance Pattern. WOP 2012 - [c18]Csongor Nyulas, Tania Tudorache, Samson W. Tu, Mark A. Musen:
Experiences with Multilingual Modeling in the Development of the International Classification of Traditional Medicine Ontology. MSW 2012 - 2011
- [c17]Hans-Georg Fill, Tania Tudorache:
On the Collaborative Formalization of Agile Semantics Using Social Network Applications. AAAI Spring Symposium: AI for Business Agility 2011 - [c16]Elena Simperl, Katharina Siorpaes, Frank Dengler, Tania Tudorache:
International workshop on semantic technologies for information-integrated collaboration (STIIC 2011). CTS 2011: 413-414 - [c15]Paul R. Alexander, Csongor Nyulas, Tania Tudorache, Patricia L. Whetzel, Natalya Fridman Noy, Mark A. Musen:
Semantic infrastructure to enable collaboration in ontology development. CTS 2011: 423-430 - [c14]Jithun Nair, Tania Tudorache, Trish Whetzel, Natalya Fridman Noy, Mark A. Musen:
The BioPortal Import Plugin for Protégé. ICBO 2011 - [c13]Tania Tudorache, Natalya Fridman Noy, Sean M. Falconer, Mark A. Musen:
A knowledge base driven user interface for collaborative ontology development. IUI 2011: 411-414 - [c12]Sean M. Falconer, Tania Tudorache, Natalya Fridman Noy:
An analysis of collaborative patterns in large-scale ontology development projects. K-CAP 2011: 25-32 - 2010
- [c11]Tania Tudorache, Sean M. Falconer, Natalya Fridman Noy, Csongor Nyulas, Tevfik Bedirhan Üstün, Margaret-Anne D. Storey, Mark A. Musen:
Ontology Development for the Masses: Creating ICD-11 in WebProtégé. EKAW 2010: 74-89 - [c10]Sean M. Falconer, Tania Tudorache, Csongor Nyulas, Natalya Fridman Noy, Mark A. Musen:
WebProtégé: Supporting the Creation of ICD-11. ISWC (Posters & Demos) 2010 - [c9]Tania Tudorache, Sean M. Falconer, Csongor Nyulas, Natalya Fridman Noy, Mark A. Musen:
Will Semantic Web Technologies Work for the Development of ICD-11? ISWC (2) 2010: 257-272 - 2008
- [c8]Natalya Fridman Noy, Tania Tudorache:
Collaborative Ontology Development on the (Semantic) Web. AAAI Spring Symposium: Symbiotic Relationships between Semantic Web and Knowledge Engineering 2008: 63-68 - [c7]Natalya Fridman Noy, Tania Tudorache, Sherri de Coronado, Mark A. Musen:
Developing Biomedical Ontologies Collaboratively. AMIA 2008 - [c6]Abraham Sebastian, Natalya Fridman Noy, Tania Tudorache, Mark A. Musen:
A Generic Ontology for Collaborative Ontology-Development Workflows. EKAW 2008: 318-328 - [c5]Timothy Redmond, Michael Smith, Nick Drummond, Tania Tudorache:
Managing Change: An Ontology Version Control System. OWLED 2008 - [c4]Tania Tudorache, Jennifer Vendetti, Natalya Fridman Noy:
Web-Protege: A Lightweight OWL Ontology Editor for the Web. OWLED 2008 - [c3]Tania Tudorache, Natalya Fridman Noy, Mark A. Musen:
Collaborative Protege: Enabling Community-based Authoring of Ontologies. ISWC (Posters & Demos) 2008 - [c2]Tania Tudorache, Natalya Fridman Noy, Samson W. Tu, Mark A. Musen:
Supporting Collaborative Ontology Development in Protégé. ISWC 2008: 17-32 - 2007
- [c1]Tania Tudorache, Natalya Fridman Noy:
Collaborative Protege. CKC 2007
Parts in Books or Collections
- 2016
- [p1]Tania Tudorache, Luna Alani:
Semantic Web Solutions in the Automotive Industry. Semantic Web Technologies for Intelligent Engineering Applications 2016: 297-326
Editorship
- 2014
- [e6]Peter Mika, Tania Tudorache, Abraham Bernstein, Chris Welty, Craig A. Knoblock, Denny Vrandecic, Paul Groth, Natasha F. Noy, Krzysztof Janowicz, Carole A. Goble:
The Semantic Web - ISWC 2014 - 13th International Semantic Web Conference, Riva del Garda, Italy, October 19-23, 2014. Proceedings, Part I. Lecture Notes in Computer Science 8796, Springer 2014, ISBN 978-3-319-11963-2 [contents] - [e5]Peter Mika, Tania Tudorache, Abraham Bernstein, Chris Welty, Craig A. Knoblock, Denny Vrandecic, Paul Groth, Natasha F. Noy, Krzysztof Janowicz, Carole A. Goble:
The Semantic Web - ISWC 2014 - 13th International Semantic Web Conference, Riva del Garda, Italy, October 19-23, 2014. Proceedings, Part II. Lecture Notes in Computer Science 8797, Springer 2014, ISBN 978-3-319-11914-4 [contents] - 2012
- [e4]Philippe Cudré-Mauroux, Jeff Heflin, Evren Sirin, Tania Tudorache, Jérôme Euzenat, Manfred Hauswirth, Josiane Xavier Parreira, Jim Hendler, Guus Schreiber, Abraham Bernstein, Eva Blomqvist:
The Semantic Web - ISWC 2012 - 11th International Semantic Web Conference, Boston, MA, USA, November 11-15, 2012, Proceedings, Part I. Lecture Notes in Computer Science 7649, Springer 2012, ISBN 978-3-642-35175-4 [contents] - [e3]Philippe Cudré-Mauroux, Jeff Heflin, Evren Sirin, Tania Tudorache, Jérôme Euzenat, Manfred Hauswirth, Josiane Xavier Parreira, Jim Hendler, Guus Schreiber, Abraham Bernstein, Eva Blomqvist:
The Semantic Web - ISWC 2012 - 11th International Semantic Web Conference, Boston, MA, USA, November 11-15, 2012, Proceedings, Part II. Lecture Notes in Computer Science 7650, Springer 2012, ISBN 978-3-642-35172-3 [contents] - 2010
- [e2]Lora Aroyo, Grigoris Antoniou, Eero Hyvönen, Annette ten Teije, Heiner Stuckenschmidt, Liliana Cabral, Tania Tudorache:
The Semantic Web: Research and Applications, 7th Extended Semantic Web Conference, ESWC 2010, Heraklion, Crete, Greece, May 30 - June 3, 2010, Proceedings, Part I. Lecture Notes in Computer Science 6088, Springer 2010, ISBN 978-3-642-13485-2 [contents] - [e1]Lora Aroyo, Grigoris Antoniou, Eero Hyvönen, Annette ten Teije, Heiner Stuckenschmidt, Liliana Cabral, Tania Tudorache:
The Semantic Web: Research and Applications, 7th Extended Semantic Web Conference, ESWC 2010, Heraklion, Crete, Greece, May 30 - June 3, 2010, Proceedings, Part II. Lecture Notes in Computer Science 6089, Springer 2010, ISBN 978-3-642-13488-3 [contents]
Informal and Other Publications
- 2021
- [i2]Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall:
A Simple Standard for Sharing Ontological Mappings (SSSOM). CoRR abs/2112.07051 (2021) - 2014
- [i1]Simon Walk, Philipp Singer, Markus Strohmaier, Tania Tudorache, Mark A. Musen, Natalya Fridman Noy:
Discovering Beaten Paths in Collaborative Ontology-Engineering Projects using Markov Chains. CoRR abs/1407.2002 (2014)
Coauthor Index
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