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ORCIDKay Hamacher
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- affiliation: Darmstadt University of Technology, Germany
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2020 – today
- 2024
[j34]Patrick Kunzmann, Jan Hendrik Krumbach, Andrea Saponaro, Anna Moroni, Gerhard Thiel
, Kay Hamacher:
Anisotropic Network Analysis of Open/Closed HCN4 Channel Advocates Asymmetric Subunit Cooperativity in cAMP Modulation of Gating. J. Chem. Inf. Model. 64(12): 4727-4738 (2024)- 2023
- [j33]Patrick Kunzmann, Tom David Müller, Maximilian Greil, Jan Hendrik Krumbach, Jacob Marcel Anter, Daniel Bauer, Faisal Islam, Kay Hamacher:
Biotite: new tools for a versatile Python bioinformatics library. BMC Bioinform. 24(1): 236 (2023) - 2022
- [j32]Patrick Kunzmann, Jacob Marcel Anter, Kay Hamacher:
Adding hydrogen atoms to molecular models via fragment superimposition. Algorithms Mol. Biol. 17(1): 7 (2022) - [j31]Sebastian Stammler, Tobias Kussel, Phillipp Schoppmann, Florian Stampe, Galina Tremper, Stefan Katzenbeisser, Kay Hamacher, Martin Lablans:
Mainzelliste SecureEpiLinker (MainSEL): privacy-preserving record linkage using secure multi-party computation. Bioinform. 38(6): 1657-1668 (2022) - [j30]Felix Nikolaus Wirth, Tobias Kussel, Armin Müller, Kay Hamacher, Fabian Prasser:
EasySMPC: a simple but powerful no-code tool for practical secure multiparty computation. BMC Bioinform. 23(1): 531 (2022) - [j29]Kay Hamacher, Tobias Kussel, Tatiana von Landesberger, Tom Baumgartl, Markus Höhn, Simone Scheithauer, Michael Marschollek, Antje Wulff:
Fallzahlen, Re-Identifikation und der technische Datenschutz. Datenschutz und Datensicherheit 46(3): 143-148 (2022) - [j28]Frank Keul, Kay Hamacher:
Consistent Quantification of Complex Dynamics via a Novel Statistical Complexity Measure. Entropy 24(4): 505 (2022) - [j27]Timm Birka, Kay Hamacher, Tobias Kussel, Helen Möllering, Thomas Schneider:
SPIKE: secure and private investigation of the kidney exchange problem. BMC Medical Informatics Decis. Mak. 22(1): 253 (2022) - [c30]Kay Hamacher, Tobias Kussel, Thomas Schneider, Oleksandr Tkachenko:
PEA: Practical Private Epistasis Analysis Using MPC. ESORICS (3) 2022: 320-339 - [c29]Reto Wettstein, Tobias Kussel, Hauke Hund, Christian Fegeler, Martin Dugas, Kay Hamacher:
Secure Multi-Party Computation Based Distributed Feasibility Queries - A HiGHmed Use Case. GMDS 2022: 41-49 - [i4]Timm Birka, Kay Hamacher, Tobias Kussel, Helen Möllering, Thomas Schneider:
SPIKE: Secure and Private Investigation of the Kidney Exchange problem. CoRR abs/2204.09937 (2022) - [i3]Kay Hamacher, Tobias Kussel, Thomas Schneider, Oleksandr Tkachenko:
PEA: Practical private epistasis analysis using MPC. IACR Cryptol. ePrint Arch. 2022: 1185 (2022) - 2021
- [c28]Adrian Worring, Benjamin E. Mayer, Kay Hamacher:
Genetic algorithm niching by (Quasi-)infinite memory. GECCO 2021: 296-304 - 2020
- [j26]Patrick Kunzmann, Benjamin E. Mayer, Kay Hamacher:
Substitution matrix based color schemes for sequence alignment visualization. BMC Bioinform. 21(1): 209 (2020) - [j25]Kay Hamacher, Stefan Katzenbeisser, Tobias Kussel, Sebastian Stammler:
Genomische Daten und der Datenschutz. Datenschutz und Datensicherheit 44(2): 87-93 (2020) - [j24]Michael Schmidt, Kay Hamacher, Felix Reinhardt, Thea S. Lotz, Florian Groher, Beatrix Suess, Sven Jager:
SICOR: Subgraph Isomorphism Comparison of RNA Secondary Structures. IEEE ACM Trans. Comput. Biol. Bioinform. 17(6): 2189-2195 (2020)
2010 – 2019
- 2019
- [j23]Johannes Buchmann, Matthias Geihs, Kay Hamacher, Stefan Katzenbeisser, Sebastian Stammler:
Long-term integrity protection of genomic data. EURASIP J. Inf. Secur. 2019: 15 (2019) - [c27]Kay Hamacher:
Hybridization of Stochastic Tunneling with (Quasi)-Infinite Time-Horizon Tabu Search. HM 2019: 124-135 - 2018
- [j22]Patrick Kunzmann, Kay Hamacher:
Biotite: a unifying open source computational biology framework in Python. BMC Bioinform. 19(1): 346:1-346:8 (2018) - [j21]Michael Schmidt, Kay Hamacher:
hoDCA: higher order direct-coupling analysis. BMC Bioinform. 19(1): 546:1-546:5 (2018) - [j20]Maximilian J. Dombrowsky, Sven Jager, Benjamin Schiller, Benjamin E. Mayer, Sebastian Stammler, Kay Hamacher:
StreaMD: Advanced analysis of molecular dynamics using R. J. Comput. Chem. 39(21): 1666-1674 (2018) - [c26]Oleksandr Tkachenko, Christian Weinert, Thomas Schneider, Kay Hamacher:
Large-Scale Privacy-Preserving Statistical Computations for Distributed Genome-Wide Association Studies. AsiaCCS 2018: 221-235 - 2017
- [j19]Sven Jager, Benjamin Schiller, Philipp Babel, Malte Blumenroth, Thorsten Strufe, Kay Hamacher:
StreAM-Tg: algorithms for analyzing coarse grained RNA dynamics based on Markov models of connectivity-graphs. Algorithms Mol. Biol. 12(1): 15:1-15:16 (2017) - [j18]Frank Keul, Martin Hess, Michael Goesele, Kay Hamacher:
PFASUM: a substitution matrix from Pfam structural alignments. BMC Bioinform. 18(1): 293 (2017) - [j17]Christine Groß, Kay Hamacher, Katja Schmitz, Sven Jager:
Cleavage Product Accumulation Decreases the Activity of Cutinase during PET Hydrolysis. J. Chem. Inf. Model. 57(2): 243-255 (2017) - [c25]Daniel Demmler, Kay Hamacher, Thomas Schneider, Sebastian Stammler:
Privacy-Preserving Whole-Genome Variant Queries. CANS 2017: 71-92 - [c24]Patrick Boba, Kay Hamacher:
TransferEntropyPT: An R Package to Assess Transfer Entropies via Permutation Tests. CMSB 2017: 285-290 - 2016
- [j16]Martin Hess, Frank Keul, Michael Goesele, Kay Hamacher:
Addressing inaccuracies in BLOSUM computation improves homology search performance. BMC Bioinform. 17: 189 (2016) - [c23]Kay Hamacher:
Using Lisp Macro-Facilities for Transferable Statistical Tests. ELS 2016: 31-37 - [c22]Paul Manns, Kay Hamacher:
Evolving Smoothing Kernels for Global Optimization. EvoApplications (2) 2016: 56-72 - [c21]Sebastian Stammler, Stefan Katzenbeisser, Kay Hamacher:
Correcting Finite Sampling Issues in Entropy l-diversity. PSD 2016: 135-146 - [c20]Martin Hess, Daniel Jente, Josef Wiemeyer, Kay Hamacher, Michael Goesele:
Visual Analysis and Comparison of Multiple Sequence Alignments. VCBM/MedViz 2016: 31-40 - [c19]Sven Jager, Benjamin Schiller, Thorsten Strufe, Kay Hamacher:
StreAM- T_g : Algorithms for Analyzing Coarse Grained RNA Dynamics Based on Markov Models of Connectivity-Graphs. WABI 2016: 197-209 - 2015
- [j15]Christoph Scholz, Sabine Knorr, Kay Hamacher, Boris Schmidt:
DOCKTITE - A Highly Versatile Step-by-Step Workflow for Covalent Docking and Virtual Screening in the Molecular Operating Environment. J. Chem. Inf. Model. 55(2): 398-406 (2015) - [c18]Benjamin Schiller, Sven Jager, Kay Hamacher, Thorsten Strufe:
StreaM - A Stream-Based Algorithm for Counting Motifs in Dynamic Graphs. AlCoB 2015: 53-67 - 2014
- [j14]Martin Hess, Sebastian Bremm, Stephanie Weissgraeber, Kay Hamacher, Michael Goesele, Josef Wiemeyer, Tatiana von Landesberger:
Visual Exploration of Parameter Influence on Phylogenetic Trees. IEEE Computer Graphics and Applications 34(2): 48-56 (2014) - [j13]Michael Waechter, Kathrin Jaeger, Daniel Thuerck, Stephanie Weissgraeber, Sven Widmer, Michael Goesele, Kay Hamacher:
Using graphics processing units to investigate molecular coevolution. Concurr. Comput. Pract. Exp. 26(6): 1278-1296 (2014) - [c17]Martin Hess, Josef Wiemeyer, Kay Hamacher, Michael Goesele:
Serious Games for Solving Protein Sequence Alignments - Combining Citizen Science and Gaming. GameDays 2014: 175-185 - [c16]Benjamin E. Mayer, Kay Hamacher:
Stochastic tunneling transformation during selection in genetic algorithm. GECCO 2014: 801-806 - [c15]Patrick Boba, Stefan Gries, Kay Hamacher:
R as an Integration Tool in High Performance Computing - Lessons Learned. GI-Jahrestagung 2014: 137-148 - [c14]Kay Hamacher:
Online Performance Measures for Metaheuristic Optimization. Hybrid Metaheuristics 2014: 169-182 - [c13]Olav Lenz, Frank Keul, Sebastian Bremm, Kay Hamacher, Tatiana von Landesberger:
Visual analysis of patterns in multiple amino acid mutation graphs. IEEE VAST 2014: 93-102 - [c12]Nikolaos P. Karvelas, Andreas Peter, Stefan Katzenbeisser, Erik Tews, Kay Hamacher:
Privacy-Preserving Whole Genome Sequence Processing through Proxy-Aided ORAM. WPES 2014: 1-10 - 2013
- [j12]Micha Ober, Stefan Katzenbeisser, Kay Hamacher:
Structure and Anonymity of the Bitcoin Transaction Graph. Future Internet 5(2): 237-250 (2013) - [j11]Martin Franz, Björn Deiseroth, Kay Hamacher, Somesh Jha, Stefan Katzenbeisser, Heike Schröder:
Secure computations on non-integer values with applications to privacy-preserving sequence analysis. Inf. Secur. Tech. Rep. 17(3): 117-128 (2013) - [j10]Susanne Pape, Franziska Hoffgaard, Mirjam Dür, Kay Hamacher:
Distance dependency and minimum amino acid alphabets for decoy scoring potentials. J. Comput. Chem. 34(1): 10-20 (2013) - [c11]Kay Hamacher:
A New Hybrid Metaheuristic - Combining Stochastic Tunneling and Energy Landscape Paving. Hybrid Metaheuristics 2013: 107-117 - [i2]Kay Hamacher, Jean-Pierre Hubaux, Gene Tsudik:
Genomic Privacy (Dagstuhl Seminar 13412). Dagstuhl Reports 3(10): 25-35 (2013) - 2011
- [j9]Kay Hamacher:
Efficient quantification of the importance of contacts for the dynamical stability of proteins. J. Comput. Chem. 32(5): 810-815 (2011) - [c10]Martin Franz, Björn Deiseroth, Kay Hamacher, Somesh Jha, Stefan Katzenbeisser, Heike Schröder:
Towards Secure Bioinformatics Services (Short Paper). Financial Cryptography 2011: 276-283 - [c9]Sebastian Bremm, Tatiana von Landesberger, Martin Hess, Tobias Schreck, Philipp Weil, Kay Hamacher:
Interactive visual comparison of multiple trees. IEEE VAST 2011: 31-40 - [c8]Kay Hamacher, Stefan Katzenbeisser:
Public security: simulations need to replace conventional wisdom. NSPW 2011: 115-124 - [c7]Michael Waechter, Kay Hamacher, Franziska Hoffgaard, Sven Widmer, Michael Goesele:
Is Your Permutation Algorithm Unbiased for n ≠ 2 m ? PPAM (1) 2011: 297-306 - 2010
- [j8]Franziska Hoffgaard, Philipp Weil, Kay Hamacher:
BioPhysConnectoR: Connecting Sequence Information and Biophysical Models. BMC Bioinform. 11: 199 (2010) - [j7]Sebastian Bremm, Tobias Schreck, Patrick Boba, Stephanie Held, Kay Hamacher:
Computing and visually analyzing mutual information in molecular co-evolution. BMC Bioinform. 11: 330 (2010) - [j6]Daniel Reker, Stefan Katzenbeisser, Kay Hamacher:
Computation of mutual information from Hidden Markov Models. Comput. Biol. Chem. 34(5-6): 328-333 (2010) - [j5]Kay Hamacher:
Efficient perturbation analysis of elastic network models - Application to acetylcholinesterase of T. californica. J. Comput. Phys. 229(19): 7309-7316 (2010) - [c6]Patrick Boba, Philipp Weil, Franziska Hoffgaard, Kay Hamacher:
Co-evolution in HIV Enzymes. BIOINFORMATICS 2010: 39-47 - [c5]Kay Hamacher:
Protein Domain Phylogenies - Information Theory and Evolutionary Dynamics. BIOINFORMATICS 2010: 114-122 - [c4]Patrick Boba, Philipp Weil, Franziska Hoffgaard, Kay Hamacher:
Intra- and Inter-Molecular Coevolution: The Case of HIV1 Protease and Reverse Transcriptase. BIOSTEC (Selected Papers) 2010: 356-366 - [c3]Martin Franz, Björn Deiseroth, Kay Hamacher, Somesh Jha, Stefan Katzenbeisser, Heike Schröder:
Secure computations on non-integer values. WIFS 2010: 1-6 - [i1]Martin Franz, Björn Deiseroth, Kay Hamacher, Somesh Jha, Stefan Katzenbeisser, Heike Schröder:
Secure Computations on Non-Integer Values. IACR Cryptol. ePrint Arch. 2010: 499 (2010)
2000 – 2009
- 2009
- [j4]Philipp Weil, Franziska Hoffgaard, Kay Hamacher:
Estimating sufficient statistics in co-evolutionary analysis by mutual information. Comput. Biol. Chem. 33(6): 440-444 (2009) - [c2]Kay Hamacher, Michael Goesele:
Vorwort zum Workshop "Massively parallel computational biology on GPUs". GI Jahrestagung 2009: 44-45 - [c1]Jens Ackermann, Paul Baecher, Thorsten Franzel, Michael Goesele, Kay Hamacher:
Massively-Parallel Simulation of Biochemical Systems. GI Jahrestagung 2009: 739-750 - 2007
- [j3]Kay Hamacher:
Information theoretical measures to analyze trajectories in rational molecular design. J. Comput. Chem. 28(16): 2576-2580 (2007) - [j2]Kay Hamacher:
Adaptive extremal optimization by detrended fluctuation analysis. J. Comput. Phys. 227(2): 1500-1509 (2007) - 2006
- [j1]Kay Hamacher, Joanna Trylska, James Andrew McCammon:
Dependency Map of Proteins in the Small Ribosomal Subunit. PLoS Comput. Biol. 2(2) (2006)
Coauthor Index
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last updated on 2024-10-15 21:35 CEST by the dblp team
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