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ORCIDAlgorithms for Molecular Biology, Volume 17
Volume 17, Number 1, December 2022
- Luiz Augusto G. Silva
, Luis Antonio Brasil Kowada, Noraí Romeu Rocco, Maria Emília M. T. Walter:
A new 1.375-approximation algorithm for sorting by transpositions. 1 - Yishu Wang, Arnaud Mary, Marie-France Sagot, Blerina Sinaimeri:
Efficiently sparse listing of classes of optimal cophylogeny reconciliations. 2 - Palash Sashittal, Simone Zaccaria, Mohammed El-Kebir:
Parsimonious Clone Tree Integration in cancer. 3 - Hamza Iseric, Can Alkan, Faraz Hach, Ibrahim Numanagic:
Fast characterization of segmental duplication structure in multiple genome assemblies. 4 - Yoshihiro Shibuya, Djamal Belazzougui, Gregory Kucherov:
Space-efficient representation of genomic k-mer count tables. 5 - Jason Fan, Skylar Chan, Rob Patro:
Perplexity: evaluating transcript abundance estimation in the absence of ground truth. 6 - Patrick Kunzmann, Jacob Marcel Anter, Kay Hamacher:
Adding hydrogen atoms to molecular models via fragment superimposition. 7 - Bertrand Marchand, Yann Ponty, Laurent Bulteau:
Tree diet: reducing the treewidth to unlock FPT algorithms in RNA bioinformatics. 8 - Yoshiki Nakagawa, Satsuya Ohata, Kana Shimizu:
Efficient privacy-preserving variable-length substring match for genome sequence. 9 - Peter F. Stadler, Sebastian Will:
Bi-alignments with affine gaps costs. 10 - Marcin Wawerka, Dawid Dabkowski, Natalia Rutecka, Agnieszka Mykowiecka, Pawel Górecki:
Embedding gene trees into phylogenetic networks by conflict resolution algorithms. 11 - Spencer Krieger, John D. Kececioglu:
Heuristic shortest hyperpaths in cell signaling hypergraphs. 12 - Yue Wang:
Two metrics on rooted unordered trees with labels. 13 - Anuradha Wickramarachchi, Yu Lin:
Binning long reads in metagenomics datasets using composition and coverage information. 14 - Céline Scornavacca, Mathias Weller:
Treewidth-based algorithms for the small parsimony problem on networks. 15 - Tom Davot, Annie Chateau, Rohan Fossé, Rodolphe Giroudeau, Mathias Weller:
On a greedy approach for genome scaffolding. 16 - Spencer Krieger, John D. Kececioglu:
Correction: Heuristic shortest hyperpaths in cell signaling hypergraphs. 17
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