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ORCIDPeerJ PrePrints, Volume 3
Volume 3, 2015
- Benjamin Adams:
Geographic Feature Type Topic Model (GFTTM): grounding topics in the landscape. e816 - Matheus Sant Ana Lima:
An genetic algorithm approach for profiling computational performance measures. e819 - Abhishek Bhatia, Chetan Sharma, Rinkaj Goyal:
Development of an agent based model illustrating the usage of deferred acceptance algorithm in the admission process. e825 - Joan Starr, Eleni Castro, Mercè Crosas, Michel Dumontier, Robert R. Downs, Ruth E. Duerr
, Laurel L. Haak, Melissa A. Haendel, Iván Herman, Simon Hodson, Joe Hourclé, John Ernest Kratz, Jennifer Lin, Lars Holm Nielsen, Amy Nurnberger, Stefan Pröll, Andreas Rauber, Simone Sacchi, Arthur P. Smith, Michael Taylor, Tim Clark:
Achieving human and machine accessibility of cited data in scholarly publications. e697 - Meiyappan Nagappan, Romain Robbes, Yasutaka Kamei, Éric Tanter, Shane McIntosh, Audris Mockus, Ahmed E. Hassan:
An empirical study of goto in C code. e826 - Daniel J. Greenhoe:
Order and metric geometry compatible stochastic processing. e844 - Crysttian Arantes Paixão, Flávio Codeço Coelho:
Matrix compression methods. e849
- Nishant Gupta, Shubhnandan S. Jamwal:
Server side algorithms for WHLK (Watermark, Hardware Parameters and License Key) framework. e868 - Eduard Paul Enoiu:
Programming languages popularity and implications to testing programmable logic controllers. e879 - Seyed Mohammad Ali Sanipour, Iman Ahadi-Akhlaghi:
A new method for eliminating blur caused by the rotational motion of the images. e872 - Hemant Purohit, Tanvi Banerjee, Andrew J. Hampton, Valerie L. Shalin, Nayanesh Bhandutia, Amit P. Sheth:
Gender-based violence in 140 characters or fewer: a #BigData case study of Twitter. e883 - Qingpeng Zhang, Sherine Awad, C. Titus Brown:
Crossing the streams: a framework for streaming analysis of short DNA sequencing reads. e890 - Greg R. Ziegler, Ryan H. Hartsock, Ivan Baxter:
Zbrowse: an interactive GWAS results browser. e902 - Santonu Goswami, Kuldeep Matharasi:
Development of a web-based vegetation spectral library (VSL) for remote sensing research and applications. e915
- Ziyun Xu:
The ever-changing face of Chinese Interpreting Studies: a social network analysis. e945 - Mehmet Adil Yalçin, Elizabeth E. Gardner, Lindsey B. Anderson, Rowie Kirby-Straker, Andrew D. Wolvin, Benjamin B. Bederson:
Analysis of consistency in large multi-section courses using exploration of linked visual data summaries. e964 - Matthew D. Shirley, Zhaorong Ma, Brent S. Pedersen, Sarah J. Wheelan:
Efficient "pythonic" access to FASTA files using pyfaidx. e970 - Jürgen Cito, Philipp Leitner, Harald C. Gall, Aryan Dadashi, Anne Keller, Andreas Roth:
Runtime metric meets developer - Building better cloud applications using feedback. e985 - Abram Hindle:
Tech report: Orchestrating your cloud orchestra: Model driven development of cloud deployment and orchestration for distributed computer music instruments. e991 - Alex Wilson, Abram Hindle:
The Shake Stick. e995
- Farzana Rahman, Rohit Farmer, Sayoni Das, Fatima Vayani, Mehedi Hassan:
Highlights from the 1st Student Symposium on Computational Biology and Life Sciences, organised by ISCB Regional Student Group, UK. e999 - Alvaro R. Ortiz Troncoso:
Data management aspects of public engagement with biodiversity documentation. e992 - Hudson Borges, Marco Túlio Valente:
Mining usage patterns for the Android API. e1075 - Cati Brown-Johnson, Donald Rubin:
A corpus-based analysis of potential linguistic indicators of corporate deception in tobacco industry documents. e1079 - Adam S. Hughes, Mark E. Reeves, Zhaowen Liu:
PAME: Plasmonic Assay Modeling Environment. e1085 - Thomas Sloan, Julio C. Hernandez-Castro:
Forensic analysis of video steganography tools. e1019 - Ammar Benabdelkader, Antoine H. C. van Kampen, Sílvia D. Olabarriaga:
PROV-man: A PROV-compliant toolkit for provenance management. e1102 - Joshua Charles Campbell, Abram Hindle, José N. Amaral:
Error location in Python: where the mutants hide. e1132
- Evgeny V. Mavrodiev:
1001 - A tool for binary representations of unordered multistate characters (with examples from genomic data). e1153 - Sujata Jindal, Ritu Sindhu:
Measuring the value of the social network: analysis, quantitative approach, and application. e1154 - Sakshi Aggarwal, Ritu Sindhu:
An approach to improve the efficiency of apriori algorithm. e1159 - Carol V. Alexandru, Annibale Panichella, Sebastiano Panichella, Alberto Bacchelli, Harald C. Gall:
Smart learning: A search-based approach to rank change and defect prone classes. e1160 - Mario Ziller:
A multi prototype classification algorithm and its application to multi class diagnostics. e1180 - Zhihua Li:
A redundancy-removing feature selection algorithm for nominal data. e1184 - Gregory Burlet, Abram Hindle:
Isolated instrument transcription using a deep belief network. e1193 - Ziyun Xu, Leonid B. Pekelis:
A survey of Chinese Interpreting Studies: Who influences who ... and why? e941 - Lee Naish:
Sharing analysis in the Pawns compiler. e907 - Joshua Charles Campbell, Abram Hindle:
The charming code that error messages are talking about. e1138 - Vincenzo Palleschi, Luca Pagani, Stefano Pagnotta, Giuseppe Amato, Sergio Tofanelli:
Application of Graph Theory to the elaboration of personal genomic data for genealogical research. e1201
- Daniela Zahn, Christoph Scheepers:
Overt prosody and plausibility as cues to relative-clause attachment in English spoken sentences. e1210 - Xiaolong Wang, Chao Yang:
CAUSA 2.0: accurate and consistent evolutionary analysis of proteins using codon and amino acid unified sequence alignments. e1214 - Rubén Saborido, Venera Arnaoudova, Giovanni Beltrame, Foutse Khomh, Giuliano Antoniol:
On the impact of sampling frequency on software energy measurements. e1219 - Abraham G. Ayana:
Improving Brill's tagger lexical and transformation rule for Afaan Oromo language. e1225 - Pavlo Bazilinskyy, Joost C. F. de Winter:
Auditory interfaces in automated driving: an international survey. e1069 - Paul Fremantle, Philip J. Scott:
A security survey of middleware for the Internet of Things. e1241 - Horacio Pérez Sánchez, Vahid Rezaei Tabar, Vitaliy Mezhuyev, Duhu Man, Jorge Peña-García, Helena den-Haan, Sandra Gesing:
Developing science gateways for drug discovery in a grid environment. e1245 - Niko Schwarz, Aaron Karper, Oscar Nierstrasz:
Efficiently extracting full parse trees using regular expressions with capture groups. e1248 - Gerhard Marquart, Joost C. F. de Winter:
Workload assessment for mental arithmetic tasks using the task-evoked pupillary response. e1105 - Chakkrit Tantithamthavorn, Shane McIntosh, Ahmed E. Hassan, Ken-ichi Matsumoto:
Comments on "Researcher bias: The use of machine learning in software defect prediction". e1260 - Candy Pang, Abram Hindle, Bram Adams, Ahmed E. Hassan:
What do programmers know about the energy consumption of software? e886
- Ziyun Xu:
Doctoral dissertations in Chinese Interpreting Studies: A scientometric survey using topic modeling. e1277 - Nuno Fachada, Vitor V. Lopes, Rui Costa Martins, Agostinho C. Rosa:
A template model for agent-based simulations. e1278 - Shaiful Alam Chowdhury, Varun Sapra, Abram Hindle:
Is HTTP/2 more energy efficient than HTTP/1.1 for mobile users? e1280 - Patrick Golden, Ryan Shaw:
Nanopublication beyond the Sciences. e1284 - Shern Shiou Tan, Tomás Maul, Neil Mennie:
Luminophonics experiment: A user study on visual sensory substitution device. e1289 - Gerald Schermann, Jürgen Cito, Philipp Leitner:
All the services large and micro: Revisiting industrial practices in services computing. e1291 - Abe Kazemzadeh, James Gibson, Panayiotis G. Georgiou, Sungbok Lee, Shrikanth S. Narayanan:
A Socratic epistemology for verbal emotional intelligence. e1292 - Stefanie König, Lars Romoth, Lizzy Gerischer, Mario Stanke:
Simultaneous gene finding in multiple genomes. e1296 - Markus Fleischauer, Sebastian Böcker:
Collecting reliable clades using the Greedy Strict Consensus Merger. e1297 - Thomas Bellitto, Tobias Marschall, Alexander Schönhuth, Gunnar W. Klau:
Next generation cluster editing. e1301 - Heiko Giese, Jörg Ackermann, Ulrich Brandt, Ilka Wittig, Ina Koch:
Cluster analysis and visualization techniques for large datasets in complexome profiling. e1303 - Stefan Schuster, Daniel Boley, Philip Möller, Christoph Kaleta:
A minimal model for explaining the higher ATP production in the Warburg effect. e1309 - Shuangshuang Nie, Jihong Gao:
Discrete time-cost tradeoff model for optimizing multi-mode construction project resource allocation. e1299 - Ivanilton Polato, Denilson Barbosa, Abram Hindle, Fabio Kon:
Hybrid HDFS: decreasing energy consumption and speeding up Hadoop using SSDs. e1320 - Jan Mokrý, Miloslav Nic:
Designing Universal Chemical Markup (UCM) through the reusable methodology based on analyzing existing related formats. e1335 - Jan Mokrý, Miloslav Nic:
Universal Chemical Markup (UCM) - A new format for common chemical data. e1336
- Nina Hesse, Christopher Schröder, Sven Rahmann:
An optimization approach to detect differentially methylated regions from Whole Genome Bisulfite Sequencing data. e1287 - Derek Doran, Andrew Fox:
Operationalizing Central Place Theory and Central Flow Theory with mobile phone data. e1342 - Axel Mosig, Jörg Rahnenführer, Martin Eisenacher, Sven Rahmann:
Invited presentations, junior research groups and research highlights at GCB 2015. e1352 - Maleknaz Nayebi, Guenther Ruhe:
Trade-off Service Portfolio Planning - A Case Study on Mining the Android App Market. e1354 - Guilherme Avelino, Marco Túlio Valente, André C. Hora:
What is the Truck Factor of popular GitHub applications? A first assessment. e1233 - Jaderick P. Pabico:
The set of (N/2i)-distance graphs of CN and its application to efficient information broadcast among N nodes over KN. e1372 - Jaderick P. Pabico, Eliezer A. Albacea:
A nomenclature for the standard linguistic description of the kinematics of networks. e1374 - Oussama Metatla, Nick Bryan-Kinns, Tony Stockman, Fiore Martin:
Sonification of reference markers for auditory graphs: Effects on non-visual point estimation tasks. e1376 - Martin Eisenacher, Jörg Rahnenführer, Axel Mosig, Sven Rahmann:
Poster abstracts of GCB 2015. e1350 - Christopher Schröder, Sven Rahmann:
Efficient duplicate rate estimation from subsamples of sequencing libraries. e1298 - Derek Doran, Nathan Rude:
Request type prediction for Web robot and Internet of Things traffic. e1386 - Felipe De Mendiburu, Reinhard Simon:
Agricolae - Ten years of an open source statistical tool for experiments in breeding, agriculture and biology. e1404 - Alice C. Eldridge, Michael A. Casey, Paola Moscoso, Mika Peck:
A new direction for Soundscape Ecology? Toward the extraction and evaluation of ecologically-meaningful soundscape objects using sparse coding methods. e1407
- Muthukumaran Kasinathan, Lalita Bhanu Murthy Neti:
Impact of restricted forward greedy feature selection technique on bug prediction. e1411 - Jonathan Tamary, Dror G. Feitelson:
The rise of Chrome. e966 - Koos Vanderwilt:
Outline for an information theoretic search engine. e1400 - Harald Klimach, Jens Zudrop, Sabine Roller:
Generation of high order geometry representations in octree meshes. e1316 - Nuno Fachada, Vitor V. Lopes, Rui Costa Martins, Agostinho C. Rosa:
Towards a standard model for research in agent-based modeling and simulation. e1440 - Elisha D. Roberson:
Identification of high-efficiency 3'GG gRNA motifs in indexed FASTA files with ngg2. e969 - Yubin Huang:
Testing a new idea to solve the P = NP problem with mathematical induction. e1455 - Karan Aggarwal, Mohammad Salameh, Abram Hindle:
Using machine translation for converting Python 2 to Python 3 code. e1459 - Naga Durga Prasad Avirneni, Prem Ramesh, Arun K. Somani:
Managing contamination delay to improve Timing Speculation architectures. e1412 - Edmund Hart, Pauline Barmby, David S. LeBauer, François Michonneau, Sarah Mount, Timothée Poisot, Kara H. Woo, Naupaka Zimmerman, Jeffrey W. Hollister:
Ten simple rules for digital data storage. e1448 - Sebastiano Panichella, Annibale Panichella, Moritz Beller, Andy Zaidman, Harald C. Gall:
The impact of test case summaries on bug fixing performance: An empirical investigation. e1467
- Kimio Kuramitsu, Shin-ya Hamaguchi:
XML schema validation using parsing expression grammars. e1503 - Roman V. Krynochkin:
Frequency components with negative resistance for intellectual measurement systems. e1506 - Giuseppe Destefanis, Marco Ortu, Steve Counsell, Michele Marchesi, Roberto Tonelli:
Software development: do good manners matter? e1515 - Alexandru Topirceanu, Mihai Udrescu, Mircea Vladutiu, Radu Marculescu:
Tolerance-based interaction: A new model targeting opinion formation and diffusion in social networks. e1322 - Zeeshan Ahmed:
Project report: intelligent semantic oriented agent based Search. e1518 - Mahawaga Arachchige Pathum Chamikara, Akalanka Galappaththi, Roshan D. Yapa, Ruwan D. Nawarathna, Saluka Ranasinghe Kodituwakku, Jagath Gunatilake, Liwan H. Liyanage:
A crime data analysis framework with geographical information support for intelligence led policing. e1529 - Mahawaga Arachchige Pathum Chamikara, Akalanka Galappaththi, Roshan D. Yapa, Ruwan D. Nawarathna, Saluka Ranasinghe Kodituwakku, Jagath Gunatilake, Aththanapola Arachchilage Chathranee Anumitha Jayathilake, Liwan H. Liyanage:
Fuzzy based binary feature profiling for modus operandi analysis. e1532 - Sebastiano Panichella:
Textual analysis or natural language parsing? A software engineering perspective. e1534 - Abram Hindle:
Green software engineering: the curse of methodology. e1470 - Ron Henkel, Fabienne Lambusch, Dagmar Waltemath:
Finding pattern in biochemical reaction networks - a sub-graph mining approach. e1479 - Andrew MacDonald:
PhilDB - The time series database with built-in change logging. e1488 - Stefan Wagner, Asim Abdulkhaleq, Ivan Bogicevic, Jan-Peter Ostberg, Jasmin Ramadani:
How are functionally similar code clones different? e1516
- Malgorzata Habich, Sergej Djuranovic, Pawel Szczesny:
PATACSDB - The database of polyA translational attenuators in coding sequences. e1557 - Don L. Jewett:
Improving knowledge-creation and post-graduate education in science and medicine by means of webpendeons and meta-links. e1568 - Andrey Chistyakov:
Multilayered model of speech. e1576 - Eddie A. Santos, Abram Hindle:
Multi-token code suggestions using statistical language models. e1597 - Concita Cantarella, Rachele Tamburino, Nunzia Scotti, Teodoro Cardi, Nunzio D'Agostino:
Strategies and difficulties in assembling highly recombinogenic plant organelle genomes: a case study. e1599 - Orlando Schwery, Brian C. O'Meara:
MonoPhy: A simple R package to find and visualize monophyly issues. e1600 - Sakshi Singh, Giovanni Colonna, Gennaro Ciliberto, Susan Costantini:
The linkage of human circadian rhythms and hepatocellular carcinoma (HCC) through network analysis. e1604 - Sasikanth Goteti:
On Machine Learning applications with algebraic geometry. e1618 - Giuseppe Scanniello, Simone Romano, Davide Fucci, Burak Turhan, Natalia Juristo Juzgado:
Students' and professionals' perceptions of test-driven development: a focus group study. e1619
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