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ORCIDJournal of Computational Biology, Volume 2
Volume 2, Number 1, Spring 1995
- Donald Beaver:
Computing with DNA. 1-7 - Sean R. Eddy
, Graeme J. Mitchison, Richard Durbin:
Maximum Discrimination Hidden Markov Models of Sequence Consensus. 9-23 - Roger F. Sewell, Richard Durbin:
Method for Calculation of Probability of Matching a Bounded Regular Expression in a Random Data String. 25-31 - Mudita Jain, Eugene W. Myers:
A Note on Scoring Clones Given a Probe Ordering. 33-37 - Mike A. Steel, Y. X. Fu:
Classifying and Counting Linear Phylogenetic Invariants for the Jukes-Cantor Model. 39-47 - Gunter Weiss, Arndt von Haeseler:
Modeling the Polymerase Chain Reaction. 49-61 - Fengzhu Sun:
The Polymerase Chain Reaction and Branching Processes. 63-86 - Mikhail S. Gelfand:
Prediction of Function in DNA Sequence. 87-115 - James W. Fickett:
ORFs and Genes: How Strong a Connection? 117-123 - Bonnie Berger:
Algorithms for Protein Structural Motif Recognition. 125-138 - Paul W. Goldberg, Martin Charles Golumbic, Haim Kaplan, Ron Shamir:
Four Strikes Against Physical Mapping of DNA. 139-152
Volume 2, Number 2, Summer 1995
- Farid Alizadeh, Richard M. Karp, Deborah K. Weisser, Geoffrey Zweig:
Physical Mapping of Chromosomes Using Unique Probes. 159-184 - Will D. Gillett, Jim Daues, Liz Hanks, Robert G. Capra:
Fragment Collapsing and Splitting While Assembling High-Resolution Restriction Maps. 185-205 - Martin E. Dyer, Alan M. Frieze, Stephen Suen:
Ordering Clone Libraries in Computational Biology. 207-218 - David S. Greenberg, Sorin Istrail:
Physical Mapping by STS Hybridization: Algorithmic Strategies and the Challenge of Software Evaluation. 219-273 - Eugene W. Myers:
Toward Simplifying and Accurately Formulating Fragment Assembly. 275-290 - Ramana M. Idury, Michael S. Waterman:
A New Algorithm for DNA Sequence Assembly. 291-306 - Chris Armen, Clifford Stein:
Short Superstrings and the Structure of Overlapping Strings. 307-332 - Steven Skiena, Gopalakrishnan Sundaram:
Reconstructing Strings from Substrings. 333-353 - Aleksandar Milosavljevic:
DNA Sequence Recognition by Hybridization to Short Oligomers. 355-370 - Anatoly R. Rubinov, Mikhail S. Gelfand:
Reconstruction of a String from Substring Precedence Data. 371-381 - Oleg Razgulyaev, Anatoly R. Rubinov, Mikhail S. Gelfand, Alexander Chetverin:
Sequencing Potential of Nested Strand Hybridization. 383-395
Volume 2, Number 3, Fall 1995
- Richa Agarwala, David Fernández-Baca, Giora Slutzki:
Fast Algorithms for Inferring Evolutionary Trees. 397-407 - Jian Sun, Wen-Yuan Song, Li-Huang Zhu, Runsheng Chen:
Analysis of tRNA Gene Sequences by Neural Network. 409-416 - Sophie Schbath, Bernard Prum, Elisabeth de Turckheim:
Exceptional Motifs in Different Markov Chain Models for a Statistical Analysis of DNA Sequences. 417-437 - Michael A. Charleston:
Toward a Characterization of Landscapes of Combinatorial Optimization Problems, with Special Attention to the Phylogeny Problem. 439-450 - K. C. Worley, K. Y. King, S. Chua, E. R. B. McCabe, R. F. Smith:
Identification of New Members of a Carbohydrate Kinase-Encoding Gene Family. 451-458 - Sandeep K. Gupta, John D. Kececioglu, Alejandro A. Schäffer:
Improving the Practical Space and Time Efficiency of the Shortest-Paths Approach to Sum-of-Pairs Multiple Sequence Alignment. 459-472 - Steven Salzberg:
Locating Protein Coding Regions in Human DNA Using a Decision Tree Algorithm. 473-485 - Pierre Baldi:
Substitution Matrices and Hidden Markov Models. 487-491
Volume 2, Number 4, Winter 1995
- Boris G. Mirkin, Ilya B. Muchnik, Temple F. Smith:
A Biologically Consistent Model for Comparing Molecular Phylogenies. 493-507 - Harold T. Wareham:
A Simplified Proof of the NP- and MAX SNP-Hardness of Multiple Sequence Tree Alignment. 509-514 - Craig J. Benham, Sampath Kannan, Michael Paterson, Tandy J. Warnow:
Hen's Teeth and Whale's Feet: Generalized Characters and Their Compatibility. 515-525 - Boris A. Reva, Dmitrii S. Rykunov, Arthur J. Olson, Alexei V. Finkelstein:
Constructing Lattice Models of Protein Chains with Side Groups. 527-535 - Victor M. Markowitz:
Heterogeneous Molecular Biology Databases. 537-538 - Stanley Letovsky:
Beyond the Information Maze. 539-546 - Victor M. Markowitz, Otto Ritter:
Characterizing Heterogeneous Molecular Biology Database Systems. 547-556 - Susan B. Davidson, G. Christian Overton, Peter Buneman:
Challenges in Integrating Biological Data Sources. 557-572 - Peter D. Karp:
A Strategy for Database Interoperation. 573-586
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