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ORCID26th RECOMB 2022: San Diego, CA, USA
- Itsik Pe'er
:
Research in Computational Molecular Biology - 26th Annual International Conference, RECOMB 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings. Lecture Notes in Computer Science 13278, Springer 2022, ISBN 978-3-031-04748-0
Extended Abstracts
- Pinar Demetci, Rebecca Santorella, Björn Sandstede, Ritambhara Singh:
Unsupervised Integration of Single-Cell Multi-omics Datasets with Disproportionate Cell-Type Representation. 3-19 - Ran Zhang, Laetitia Meng-Papaxanthos, Jean-Philippe Vert, William Stafford Noble:
Semi-supervised Single-Cell Cross-modality Translation Using Polarbear. 20-35 - Jingkang Zhao, Vincentius Martin, Raluca Gordân:
Transcription Factor-Centric Approach to Identify Non-recurring Putative Regulatory Drivers in Cancer. 36-51 - Minh Hoang, Hongyu Zheng, Carl Kingsford:
DeepMinimizer: A Differentiable Framework for Optimizing Sequence-Specific Minimizer Schemes. 52-69 - Vijini Mallawaarachchi, Yu Lin:
MetaCoAG: Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs. 70-85 - Agniva Chowdhury, Aritra Bose, Samson Zhou, David P. Woodruff, Petros Drineas:
A Fast, Provably Accurate Approximation Algorithm for Sparse Principal Component Analysis Reveals Human Genetic Variation Across the World. 86-106 - Haohan Wang, Oscar L. Lopez, Wei Wu, Eric P. Xing:
Gene Set Priorization Guided by Regulatory Networks with p-values through Kernel Mixed Model. 107-125 - Seyran Saeedi, Myrna G. Serrano, Dennis G. Yang, J. Paul Brooks, Gregory A. Buck, Tomasz Arodz:
Real-Valued Group Testing for Quantitative Molecular Assays. 126-142 - Max Hill, Sebastien Roch:
On the Effect of Intralocus Recombination on Triplet-Based Species Tree Estimation. 143-158 - Sazan Mahbub, Shashata Sawmya, Arpita Saha, Rezwana Reaz, M. Sohel Rahman, Md. Shamsuzzoha Bayzid:
QT-GILD: Quartet Based Gene Tree Imputation Using Deep Learning Improves Phylogenomic Analyses Despite Missing Data. 159-176 - Shahbaz Khan, Milla Kortelainen, Manuel Cáceres, Lucia Williams, Alexandru I. Tomescu:
Safety and Completeness in Flow Decompositions for RNA Assembly. 177-192 - Uthsav Chitra, Tae Yoon Park, Benjamin J. Raphael:
NetMix2: Unifying Network Propagation and Altered Subnetworks. 193-208 - Alireza Ganjdanesh, Jipeng Zhang, Wei Chen, Heng Huang:
Multi-modal Genotype and Phenotype Mutual Learning to Enhance Single-Modal Input Based Longitudinal Outcome Prediction. 209-229 - Fernando H. C. Dias, Lucia Williams, Brendan Mumey, Alexandru I. Tomescu:
Fast, Flexible, and Exact Minimum Flow Decompositions via ILP. 230-245 - Chirag Jain, Daniel Gibney, Sharma V. Thankachan:
Co-linear Chaining with Overlaps and Gap Costs. 246-262 - Daniel Gibney, Sharma V. Thankachan, Srinivas Aluru:
The Complexity of Approximate Pattern Matching on de Bruijn Graphs. 263-278 - Hanwen Xu, Sheng Wang:
ProTranslator: Zero-Shot Protein Function Prediction Using Textual Description. 279-294
Short Papers
- Chen Li, Maria Virgilio, Kathleen L. Collins, Joshua D. Welch:
Single-Cell Multi-omic Velocity Infers Dynamic and Decoupled Gene Regulation. 297-299 - Ruochi Zhang, Tianming Zhou, Jian Ma:
Ultrafast and Interpretable Single-Cell 3D Genome Analysis with Fast-Higashi. 300-301 - Dunming Hua, Ming Gu, Yanyi Du, Li Qi, Xiangjun Du, Zhidong Bai, Xiaopeng Zhu, Dechao Tian:
DiffDomain Enables Identification of Structurally Reorganized Topologically Associating Domains. 302-303 - Xiang Ge Luo, Jack Kuipers, Niko Beerenwinkel:
Joint Inference of Repeated Evolutionary Trajectories and Patterns of Clonal Exclusivity or Co-occurrence from Tumor Mutation Trees. 304-305 - Pesho Ivanov, Benjamin Bichsel, Martin T. Vechev:
Fast and Optimal Sequence-to-Graph Alignment Guided by Seeds. 306-325 - Pengfei Zhang, Zhengyuan Jiang, Yixuan Wang, Yu Li:
CLMB: Deep Contrastive Learning for Robust Metagenomic Binning. 326-348 - Dongshunyi Li, Jun Ding, Ziv Bar-Joseph:
Unsupervised Cell Functional Annotation for Single-Cell RNA-Seq. 349-352 - Kun Qian, Shiwei Fu, Hongwei Li, Wei Vivian Li:
A Novel Matrix Factorization Model for Interpreting Single-Cell Gene Expression from Biologically Heterogeneous Data. 353-355 - Meihua Dang, Anji Liu, Xinzhu Wei, Sriram Sankararaman, Guy Van den Broeck:
Tractable and Expressive Generative Models of Genetic Variation Data. 356-357 - Yang Yang, Yuchuan Wang, Yang Zhang, Jian Ma:
Concert: Genome-Wide Prediction of Sequence Elements That Modulate DNA Replication Timing. 358-359 - Chuanyi Zhang, Palash Sashittal, Mohammed El-Kebir:
CORSID Enables de novo Identification of Transcription Regulatory Sequences and Genes in Coronaviruses. 360-362 - Joshua L. Wetzel, Kaiqian Zhang, Mona Singh:
Learning Probabilistic Protein-DNA Recognition Codes from DNA-Binding Specificities Using Structural Mappings. 363-365 - Eleonora Rachtman, Shahab Sarmashghi, Vineet Bafna, Siavash Mirarab:
Uncertainty Quantification Using Subsampling for Assembly-Free Estimates of Genomic Distance and Phylogenetic Relationships. 366-368 - Pavel Skums, Fatemeh Mohebbi, Vyacheslav Tsyvina, Pelin Icer, Sumathi Ramachandran, Yury Khudyakov:
SOPHIE: Viral Outbreak Investigation and Transmission History Reconstruction in a Joint Phylogenetic and Network Theory Framework. 369-370 - Elior Rahmani, Michael I. Jordan, Nir Yosef:
Identifying Systematic Variation at the Single-Cell Level by Leveraging Low-Resolution Population-Level Data. 371 - Cong Ma, Uthsav Chitra, Shirley Zhang, Benjamin J. Raphael:
Belayer: Modeling Discrete and Continuous Spatial Variation in Gene Expression from Spatially Resolved Transcriptomics. 372-373 - Mikhail Karasikov, Harun Mustafa, Gunnar Rätsch, André Kahles:
Lossless Indexing with Counting de Bruijn Graphs. 374-376 - Amatur Rahman, Paul Medvedev:
Uncovering Hidden Assembly Artifacts: When Unitigs are not Safe and Bidirected Graphs are not Helpful (ABSTRACT). 377-379 - Pedro F. Ferreira, Jack Kuipers, Niko Beerenwinkel:
Mapping Single-Cell Transcriptomes to Copy Number Evolutionary Trees. 380-381 - Michael Ford, Ananth Hari, Oscar Rodriguez, Junyan Xu, Justin Lack, Cihan Oguz, Yu Zhang, Sarah Weber, Mary Magliocco, Jason Barnett, Sandhya Xirasagar, Smilee Samuel, Luisa Imberti, Paolo Bonfanti, Andrea Biondi, Clifton L. Dalgard, Stephen J. Chanock, Lindsey Rosen, Steven Holland, Helen Su, Luigi Notarangelo, Uzi Vishkin, Corey Watson, Süleyman Cenk Sahinalp:
ImmunoTyper-SR: A Novel Computational Approach for Genotyping Immunoglobulin Heavy Chain Variable Genes Using Short Read Data. 382-384 - Ulzee An, Na Cai, Andy Dahl, Sriram Sankararaman:
AutoComplete: Deep Learning-Based Phenotype Imputation for Large-Scale Biomedical Data. 385-386 - Nathan Guerin, Teresa Kaserer, Bruce Randall Donald:
Resistor: An Algorithm for Predicting Resistance Mutations Using Pareto Optimization over Multistate Protein Design and Mutational Signatures. 387-389 - Zheng Dai, Sachit D. Saksena, Geraldine Horny, Christine Banholzer, Stefan Ewert, David K. Gifford:
Ultra High Diversity Factorizable Libraries for Efficient Therapeutic Discovery. 390-392
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