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ORCIDMd. Shamsuzzoha Bayzid
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2020 – today
- 2024
[c10]Prottoy Saha, Md Shamiul Islam, Tasnim Rahman, Adiba Shaira, Kazi Noshin, Rezwana Reaz, Md. Shamsuzzoha Bayzid
:
Gene Tree Parsimony in the Presence of Gene Duplication, Loss, and Incomplete Lineage Sorting. RECOMB-CG 2024: 110-128- 2023
- [j16]Md Ashiqur Rahman, Abdullah Aman Tutul, Mahfuza Sharmin, Md. Shamsuzzoha Bayzid:
BEENE: deep learning-based nonlinear embedding improves batch effect estimation. Bioinform. 39(8) (2023) - [j15]Md. Shamsuzzoha Bayzid:
Inferring Optimal Species Trees in the Presence of Gene Duplication and Loss: Beyond Rooted Gene Trees. J. Comput. Biol. 30(2): 161-175 (2023) - [j14]Naser Anjum, Raian Latif Nabil, Rakibul Islam Rafi, Md. Shamsuzzoha Bayzid, Mohammad Saifur Rahman:
CD-MAWS: An Alignment-Free Phylogeny Estimation Method Using Cosine Distance on Minimal Absent Word Sets. IEEE ACM Trans. Comput. Biol. Bioinform. 20(1): 196-205 (2023) - 2022
- [j13]Sazan Mahbub, Md. Shamsuzzoha Bayzid:
EGRET: edge aggregated graph attention networks and transfer learning improve protein-protein interaction site prediction. Briefings Bioinform. 23(2) (2022) - [j12]Muhammad Ali Nayeem, Md. Shamsuzzoha Bayzid, Naser Anjum Samudro, Mohammad Saifur Rahman, M. Sohel Rahman:
PASTA with many application-aware optimization criteria for alignment based phylogeny inference. Comput. Biol. Chem. 98: 107661 (2022) - [j11]Sazan Mahbub, Shashata Sawmya, Arpita Saha, Rezwana Reaz, M. Sohel Rahman, Md. Shamsuzzoha Bayzid:
Quartet Based Gene Tree Imputation Using Deep Learning Improves Phylogenomic Analyses Despite Missing Data. J. Comput. Biol. 29(11): 1156-1172 (2022) - [j10]Muhammad Ali Nayeem, Md. Shamsuzzoha Bayzid, Atif Hasan Rahman, Rifat Shahriyar, M. Sohel Rahman:
Multiobjective Formulation of Multiple Sequence Alignment for Phylogeny Inference. IEEE Trans. Cybern. 52(5): 2775-2786 (2022) - [c9]Sazan Mahbub, Shashata Sawmya, Arpita Saha, Rezwana Reaz, M. Sohel Rahman, Md. Shamsuzzoha Bayzid:
QT-GILD: Quartet Based Gene Tree Imputation Using Deep Learning Improves Phylogenomic Analyses Despite Missing Data. RECOMB 2022: 159-176 - [c8]Navid Bin Hasan, Avijit Biswas, Metin Balaban, Siavash Mirarab, Md. Shamsuzzoha Bayzid:
Fast and Accurate Branch Support Calculation for Distance-Based Phylogenetic Placements. RECOMB-CG 2022: 33-51 - 2021
- [j9]Zaineb Chelly Dagdia, Pavel Avdeyev, Md. Shamsuzzoha Bayzid:
Biological computation and computational biology: survey, challenges, and discussion. Artif. Intell. Rev. 54(6): 4169-4235 (2021) - [j8]Nabil Ibtehaz, Ishtiaque Ahmed, Md. Sabbir Ahmed, M. Sohel Rahman, Rajeev K. Azad, Md. Shamsuzzoha Bayzid:
SSG-LUGIA: Single Sequence based Genome Level Unsupervised Genomic Island Prediction Algorithm. Briefings Bioinform. 22(6) (2021) - [j7]Mahim Mahbub, Zahin Wahab, Rezwana Reaz, Mohammad Saifur Rahman, Md. Shamsuzzoha Bayzid:
wQFM: highly accurate genome-scale species tree estimation from weighted quartets. Bioinform. 37(21): 3734-3743 (2021) - [c7]Aniruddha Ganguly, Tasin Ishmam, Khandker Aftarul Islam, Md Zahidur Rahman, Md. Shamsuzzoha Bayzid:
3D-FFS: Faster 3D object detection with Focused Frustum Search in sensor fusion based networks. IROS 2021: 6848-6853 - [i2]Aniruddha Ganguly, Tasin Ishmam, Khandker Aftarul Islam, Md Zahidur Rahman, Md. Shamsuzzoha Bayzid:
3D-FFS: Faster 3D object detection with Focused Frustum Search in sensor fusion based networks. CoRR abs/2103.08294 (2021) - 2020
- [j6]Mostofa Rafid Uddin, Sazan Mahbub, Mohammad Saifur Rahman, Md. Shamsuzzoha Bayzid:
SAINT: self-attention augmented inception-inside-inception network improves protein secondary structure prediction. Bioinform. 36(17): 4599-4608 (2020) - [c6]Muhammad Ali Nayeem, Md. Shamsuzzoha Bayzid, Sakshar Chakravarty, Mohammad Saifur Rahman, M. Sohel Rahman:
A Multi-objective Metaheuristic Approach for Accurate Species Tree Estimation. BIBE 2020: 79-84 - [i1]Nabil Ibtehaz, S. M. Shakhawat Hossain Sourav, Md. Shamsuzzoha Bayzid, M. Sohel Rahman:
Align-gram : Rethinking the Skip-gram Model for Protein Sequence Analysis. CoRR abs/2012.03324 (2020)
2010 – 2019
- 2019
- [c5]Muhammad Ali Nayeem, Md. Shamsuzzoha Bayzid, Atif Hasan Rahman, Rifat Shahriyar, M. Sohel Rahman:
A 'phylogeny-aware' multi-objective optimization approach for computing MSA. GECCO 2019: 577-585 - 2018
- [j5]Md. Shamsuzzoha Bayzid, Tandy J. Warnow:
Gene tree parsimony for incomplete gene trees: addressing true biological loss. Algorithms Mol. Biol. 13(1): 1:1-1:12 (2018) - 2017
- [c4]Md. Shamsuzzoha Bayzid, Tandy J. Warnow:
Gene Tree Parsimony for Incomplete Gene Trees. WABI 2017: 2:1-2:13 - 2014
- [j4]Siavash Mirarab, Rezwana Reaz, Md. Shamsuzzoha Bayzid, Théo Zimmermann, M. Shel Swenson, Tandy J. Warnow:
ASTRAL: genome-scale coalescent-based species tree estimation. Bioinform. 30(17): 541-548 (2014) - 2013
- [j3]Md. Shamsuzzoha Bayzid, Tandy J. Warnow:
Naive binning improves phylogenomic analyses. Bioinform. 29(18): 2277-2284 (2013) - [c3]Md. Shamsuzzoha Bayzid, Siavash Mirarab, Tandy J. Warnow:
Inferring Optimal Species Trees Under Gene Duplication and Loss. Pacific Symposium on Biocomputing 2013: 250-261 - 2012
- [j2]Md. Shamsuzzoha Bayzid, Tandy J. Warnow:
Estimating Optimal Species Trees from Incomplete Gene Trees Under Deep Coalescence. J. Comput. Biol. 19(6): 591-605 (2012) - 2010
- [j1]Muhammad Nur Yanhaona, Md. Shamsuzzoha Bayzid, Md. Saidur Rahman:
Discovering Pairwise Compatibility Graphs. Discret. Math. Algorithms Appl. 2(4): 607-624 (2010) - [c2]Muhammad Nur Yanhaona, Md. Shamsuzzoha Bayzid, Md. Saidur Rahman:
Discovering Pairwise Compatibility Graphs. COCOON 2010: 399-408
2000 – 2009
- 2008
- [c1]Abdullah Al Mueen, Md. Shamsuzzoha Bayzid, Md. Maksudul Alam, Md. Saidur Rahman:
A Heuristic Algorithm for Individual Haplotyping with Minimum Error Correction. BMEI (1) 2008: 792-796
Coauthor Index
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