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2020 – today
- 2022
[j25]Pietro Hiram Guzzi, Francesco Petrizzelli
, Tommaso Mazza:
Disease spreading modeling and analysis: a survey. Briefings Bioinform. 23(4) (2022)- [j24]Laura Fancello, Alessandro Guida, Gianmaria Frige, Arnaud Céol, Gabriele Babini, Giovanni Luca Scaglione, Mario Zanfardino, Tommaso Mazza, Lorenzo Ferrando, Pier Giuseppe Pelicci, Luca Mazzarella:
TMBleR: a bioinformatic tool to optimize TMB estimation and predictive power. Bioinform. 38(6): 1724-1726 (2022) - [j23]Francesco Petrizzelli, Tommaso Biagini, Salvatore Daniele Bianco, Niccolò Liorni, Alessandro Napoli, Stefano Castellana, Tommaso Mazza:
Connecting the dots: A practical evaluation of web-tools for describing protein dynamics as networks. Frontiers Bioinform. 2 (2022) - [c18]Francesco Chiodo, Mario Torchia, Enza Messina, Elisabetta Fersini, Tommaso Mazza, Pietro Hiram Guzzi:
A novel framework based on network embedding for the simulation and analysis of disease progression. BIBM 2022: 1886-1890 - [i2]Francesco Petrizzelli, Pietro Hiram Guzzi, Tommaso Mazza:
Beyond COVID-19 Pandemic: Topology-aware optimisation of vaccination strategy for minimising virus spreading. CoRR abs/2202.08229 (2022) - 2021
- [j22]Stefano Castellana, Tommaso Biagini, Luca Parca, Francesco Petrizzelli, Salvatore Daniele Bianco, Angelo Luigi Vescovi, Massimo Carella, Tommaso Mazza:
A comparative benchmark of classic DNA motif discovery tools on synthetic data. Briefings Bioinform. 22(6) (2021) - [j21]Stefano Castellana, Tommaso Biagini, Francesco Petrizzelli, Luca Parca, Noemi Panzironi, Viviana Caputo, Angelo L. Vescovi, Massimo Carella, Tommaso Mazza:
MitImpact 3: modeling the residue interaction network of the Respiratory Chain subunits. Nucleic Acids Res. 49(Database-Issue): D1282-D1288 (2021)
2010 – 2019
- 2018
- [j20]Tommaso Biagini, Giovanni Chillemi, Gianluigi Mazzoccoli, Alessandro Grottesi, Caterina Fusilli, Daniele Capocefalo, Stefano Castellana, Angelo L. Vescovi, Tommaso Mazza:
Molecular dynamics recipes for genome research. Briefings Bioinform. 19(5): 853-862 (2018) - [j19]Daniele Capocefalo, Juliana O. Pereira, Tommaso Mazza, Ferenc Jordán:
Food Web Topology and Nested Keystone Species Complexes. Complex. 2018: 1979214:1-1979214:8 (2018) - 2017
- [j18]Stefano Castellana, Caterina Fusilli, Gianluigi Mazzoccoli, Tommaso Biagini, Daniele Capocefalo, Massimo Carella, Angelo L. Vescovi, Tommaso Mazza:
High-confidence assessment of functional impact of human mitochondrial non-synonymous genome variations by APOGEE. PLoS Comput. Biol. 13(6) (2017) - 2015
- [j17]Tommaso Mazza, Caterina Fusilli, Chiara Saracino, Gianluigi Mazzoccoli, Francesca Tavano, Manlio Vinciguerra, Valerio Pazienza:
Functional Impact of Autophagy-Related Genes on the Homeostasis and Dynamics of Pancreatic Cancer Cell Lines. IEEE ACM Trans. Comput. Biol. Bioinform. 12(3): 667-678 (2015) - 2013
- [j16]Tommaso Mazza, Stefano Castellana:
Multi-Sided Compression Performance Assessment of ABI SOLiD WES Data. Algorithms 6(2): 309-318 (2013) - [j15]Salvatore Menniti, Emanuele Castagna, Tommaso Mazza:
Estimating the global density of graphs by a sparseness index. Appl. Math. Comput. 224: 346-357 (2013) - [j14]Stefano Castellana, Tommaso Mazza:
Congruency in the prediction of pathogenic missense mutations: state-of-the-art web-based tools. Briefings Bioinform. 14(4): 448-459 (2013) - [j13]Stefano Castellana, Marta Romani, Enza Maria Valente, Tommaso Mazza:
A solid quality-control analysis of AB SOLiD short-read sequencing data. Briefings Bioinform. 14(6): 684-695 (2013) - [j12]Tommaso Mazza, Stefano Castellana, Angelo Andriulli, Charles Auffray, Manlio Vinciguerra, Valerio Pazienza:
Affinity analysis of differentially expressed genes in hepatocytes expressing HCV core genotype 1b or 3a. Biosyst. 114(1): 64-68 (2013) - 2012
- [j11]Erik Dassi, A. Malossini, Angela Re, Tommaso Mazza, Toma Tebaldi, Luigi Caputi, Alessandro Quattrone:
AURA: Atlas of UTR Regulatory Activity. Bioinform. 28(1): 142-144 (2012) - [j10]Kaushik R. Chowdhury, Dave Cavalcanti, Mostafa El-Said, Tommaso Mazza, Chittabrata Ghosh:
Modeling and Simulation of Smart and Green Computing Systems. Computer 45(9): 22-23 (2012) - [j9]Tommaso Mazza:
High Performance Computational Systems Biology. IEEE ACM Trans. Comput. Biol. Bioinform. 9(3): 641-642 (2012) - [j8]Tommaso Mazza, Paolo Ballarini, Rosita Guido, Davide Prandi:
The Relevance of Topology in Parallel Simulation of Biological Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 9(3): 911-923 (2012) - 2011
- [c17]Tommaso Mazza, Davide Prandi:
Stability analysis of biological network topologies during stochastic simulation. SimuTools 2011: 51-56 - 2010
- [j7]Tommaso Mazza:
Editorial: Accelerating systems biology. Briefings Bioinform. 11(3): 267-269 (2010) - [j6]Tommaso Mazza, Alessandro Romanel, Ferenc Jordán:
Estimating the divisibility of complex biological networks by sparseness indices. Briefings Bioinform. 11(3): 364-374 (2010) - [j5]Tommaso Mazza, Gennaro Iaccarino, Corrado Priami:
Snazer: the simulations and networks analyzer. BMC Syst. Biol. 4: 1 (2010)
2000 – 2009
- 2009
- [j4]Paolo Ballarini, Rosita Guido, Tommaso Mazza, Davide Prandi:
Taming the complexity of biological pathways through parallel computing. Briefings Bioinform. 10(3): 278-288 (2009) - [c16]Gennaro Iaccarino, Tommaso Mazza:
Fastest parallel molecular algorithms for the elliptic curve discrete logarithm problem over GF(2n). BADS@ICAC 2009: 95-104 - [c15]Paolo Ballarini, Michele Forlin, Tommaso Mazza, Davide Prandi:
Efficient Parallel Statistical Model Checking of Biochemical Networks. PDMC 2009: 47-61 - [i1]Attila Csikász-Nagy, Adrien Fauré, Roberto Larcher, Paola Lecca, Ivan Mura, Ferenc Jordán, Alida Palmisano, Alessandro Romanel, Sean Sedwards, Heike Siebert, Sylvain Soliman, Denis Thieffry, Judit Zámborszky, Tommaso Mazza, Paolo Ballarini:
Analyzing various models of Circadian Clock and Cell Cycle coupling. Formal Methods in Molecular Biology 2009 - 2008
- [c14]Lorenzo Dematté, Tommaso Mazza:
On Parallel Stochastic Simulation of Diffusive Systems. CMSB 2008: 191-210 - [c13]Paolo Ballarini, Tommaso Mazza, Alida Palmisano, Attila Csikász-Nagy:
Studying Irreversible Transitions in a Model of Cell Cycle Regulation. PASM@EPEW 2008: 39-53 - [c12]Tommaso Mazza, Matteo Cavaliere:
Cell Cycle and Tumor Growth in Membrane Systems with Peripheral Proteins. MeCBIC 2008: 127-141 - 2007
- [j3]Sean Sedwards, Tommaso Mazza:
Cyto-Sim: a formal language model and stochastic simulator of membrane-enclosed biochemical processes. Bioinform. 23(20): 2800-2802 (2007) - [j2]Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Giuseppe Tradigo, Pierangelo Veltri:
Using ontologies for preprocessing and mining spectra data on the Grid. Future Gener. Comput. Syst. 23(1): 55-60 (2007) - [c11]Tommaso Mazza:
Towards a Complete Covering of SBML Functionalities. Workshop on Membrane Computing 2007: 353-366 - 2006
- [j1]Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Giuseppe Tradigo, Pierangelo Veltri:
Managing ontologies for Grid computing. Multiagent Grid Syst. 2(1): 29-44 (2006) - [c10]Pietro Hiram Guzzi, Mario Cannataro, Marco Gaspari, Tommaso Mazza, Barbara Quaresima, Pierangelo Veltri, Francesco Saverio Costanzo:
Analysis and Classification of Proteomics Data, a Case Study. CBMS 2006: 913-918 - [c9]Giuditta Franco, Pietro Hiram Guzzi, Vincenzo Manca, Tommaso Mazza:
Mitotic Oscillators as MP Graphs. Workshop on Membrane Computing 2006: 382-394 - 2005
- [c8]Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Giuseppe Tradigo, Pierangelo Veltri:
Preprocessing of Mass Spectrometry Proteomics Data on the Grid. CBMS 2005: 549-554 - [c7]Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Giuseppe Tradigo, Pierangelo Veltri:
Using Ontologies in PROTEUS for Modeling Proteomics Data Mining Applications. HealthGrid 2005: 17-26 - [c6]Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Giuseppe Tradigo, Pierangelo Veltri:
Algorithms and Databases in Bioinformatics: Towards a Proteomic Ontology. ITCC (1) 2005: 322-328 - [c5]Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Pierangelo Veltri:
MS-Analyzer: Intelligent Preprocessing, Management, and Data Mining Analysis of Mass Spectrometry Data on the Grid. SKG 2005: 22 - [c4]Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Pierangelo Veltri:
Distributed Management of Ontologies on the Grid. WETICE 2005: 261-266 - [c3]Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Giuseppe Tradigo, Pierangelo Veltri:
On the Preprocessing of Mass Spectrometry Proteomics Data. WIRN/NAIS 2005: 127-131 - 2004
- [c2]Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Pierangelo Veltri:
Using PROTEUS for Modeling Data Mining Analysis of Proteomics Experiments on the Grid. OTM Workshops 2004: 232-243 - [c1]Francesco Baudi, Mario Cannataro, Rita Casadonte, Francesco Costanzo, Giovanni Cuda, Maria Concetta Faniello, Marco Gaspari, Pietro Hiram Guzzi, Tommaso Mazza, Barbara Quaresima, Pierosandro Tagliaferri, Giuseppe Tradigo, Pierangelo Veltri, Salvatore Venuta:
Mass Spectrometry Data Analysis for Early Detection of Inherited Breast Cancer. WIRN 2004: 21-28
Coauthor Index
aka: Pietro Hiram Guzzi
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