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ORCIDAlessandra Carbone
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- affiliation: Sorbonne University, Paris, France
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2020 – today
- 2023
[j48]Yasser Mohseni Behbahani, Elodie Laine, Alessandra Carbone:
Deep Local Analysis deconstructs protein-protein interfaces and accurately estimates binding affinity changes upon mutation. Bioinform. 39(Supplement-1): 544-552 (2023)- [i1]Alessandra Carbone, Aurélien Decelle
, Lorenzo Rosset, Beatriz Seoane:
Fast and Functional Structured Data Generators Rooted in Out-of-Equilibrium Physics. CoRR abs/2307.06797 (2023) - 2022
- [j47]Yasser Mohseni Behbahani, Simon Crouzet, Elodie Laine, Alessandra Carbone:
Deep Local Analysis evaluates protein docking conformations with locally oriented cubes. Bioinform. 38(19): 4505-4512 (2022) - [j46]Francesco Oteri, Edoardo Sarti, Francesca Nadalin, Alessandra Carbone:
iBIS2Analyzer: a web server for a phylogeny-driven coevolution analysis of protein families. Nucleic Acids Res. 50(W1): 412-419 (2022) - [j45]Chloé Dequeker, Yasser Mohseni Behbahani, Laurent David, Elodie Laine, Alessandra Carbone:
From complete cross-docking to partners identification and binding sites predictions. PLoS Comput. Biol. 18(1) (2022) - [j44]Beatriz Seoane, Alessandra Carbone:
Soft disorder modulates the assembly path of protein complexes. PLoS Comput. Biol. 18(11): 1010713 (2022) - 2021
- [j43]Riccardo Vicedomini, Clémence Blachon, Francesco Oteri, Alessandra Carbone:
MyCLADE: a multi-source domain annotation server for sequence functional exploration. Nucleic Acids Res. 49(Webserver-Issue): 452-458 (2021) - [j42]Beatriz Seoane, Alessandra Carbone:
The complexity of protein interactions unravelled from structural disorder. PLoS Comput. Biol. 17(1) (2021) - [e2]Alessandra Carbone, Mohammed El-Kebir:
21st International Workshop on Algorithms in Bioinformatics, WABI 2021, August 2-4, 2021, Virtual Conference. LIPIcs 201, Schloss Dagstuhl - Leibniz-Zentrum für Informatik 2021, ISBN 978-3-95977-200-6 [contents] - 2020
- [j41]Laurent David, Riccardo Vicedomini, Hugues Richard, Alessandra Carbone:
Targeted domain assembly for fast functional profiling of metagenomic datasets with S3A. Bioinform. 36(13): 3975-3981 (2020) - [j40]Yasaman Karami, Paul Saighi, Rémy Vanderhaegen, Denis Gerlier, Sonia Longhi, Elodie Laine, Alessandra Carbone:
Predicting substitutions to modulate disorder and stability in coiled-coils. BMC Bioinform. 21-S(19): 573 (2020) - [j39]Elin Teppa, Diego J. Zea, Francesco Oteri, Alessandra Carbone:
COVTree: Coevolution in OVerlapped sequences by Tree analysis server. Nucleic Acids Res. 48(Webserver-Issue): W558-W565 (2020) - [j38]Flavia Corsi, Richard Lavery, Elodie Laine, Alessandra Carbone:
Multiple protein-DNA interfaces unravelled by evolutionary information, physico-chemical and geometrical properties. PLoS Comput. Biol. 16(2) (2020)
2010 – 2019
- 2018
- [j37]Francesca Nadalin, Alessandra Carbone:
Protein-protein interaction specificity is captured by contact preferences and interface composition. Bioinform. 34(3): 459-468 (2018) - [j36]Nika Abdollahi, Alexandre Albani, Éric Anthony, Agnes Baud, Mélissa Cardon, Robert Clerc, Dariusz Czernecki, Romain Conte, Laurent David, Agathe Delaune, Samia Djerroud, Pauline Fourgoux, Nadège Guiglielmoni, Jeanne Laurentie, Nathalie Lehmann, Camille Lochard, Rémi Montagne, Vasiliki Myrodia, Vaitea Opuu, Elise Parey, Lélia Polit, Sylvain Privé, Chloé Quignot, Maria Ruiz-Cuevas, Mariam Sissoko, Nicolas Sompairac, Audrey Vallerix, Violaine Verrecchia, Marc Delarue, Raphaël Guérois, Yann Ponty, Sophie Sacquin-Mora, Alessandra Carbone, Christine Froidevaux, Stéphane Le Crom, Olivier Lespinet, Martin Weigt, Samer Abboud, Juliana S. Bernardes, Guillaume Bouvier, Chloé Dequeker, Arnaud Ferré, Patrick Fuchs, Gaëlle Lelandais, Pierre Poulain, Hugues Richard, Hugo Schweke, Elodie Laine, Anne Lopes:
Meet-U: Educating through research immersion. PLoS Comput. Biol. 14(3) (2018) - 2017
- [j35]Chloé Dequeker, Elodie Laine, Alessandra Carbone:
INTerface Builder: A Fast Protein-Protein Interface Reconstruction Tool. J. Chem. Inf. Model. 57(11): 2613-2617 (2017) - [j34]Hugues Ripoche, Elodie Laine, Nicoletta Ceres, Alessandra Carbone:
JET2 Viewer: a database of predicted multiple, possibly overlapping, protein-protein interaction sites for PDB structures. Nucleic Acids Res. 45(Database-Issue): D236-D242 (2017) - [j33]Francesco Oteri, Francesca Nadalin, Raphaël Champeimont, Alessandra Carbone:
BIS2Analyzer: a server for co-evolution analysis of conserved protein families. Nucleic Acids Res. 45(Webserver-Issue): W307-W314 (2017) - 2016
- [j32]Juliana S. Bernardes, Fabio R. J. Vieira, Gerson Zaverucha, Alessandra Carbone:
A multi-objective optimization approach accurately resolves protein domain architectures. Bioinform. 32(3): 345-353 (2016) - [j31]Yasaman Karami, Elodie Laine, Alessandra Carbone:
Dissecting protein architecture with communication blocks and communicating segment pairs. BMC Bioinform. 17(S-2): 13 (2016) - [j30]Juliana S. Bernardes, Gerson Zaverucha, Catherine Vaquero, Alessandra Carbone:
Improvement in Protein Domain Identification Is Reached by Breaking Consensus, with the Agreement of Many Profiles and Domain Co-occurrence. PLoS Comput. Biol. 12(7) (2016) - 2015
- [j29]Alessandra Carbone, Fernando Ferreira, Benedikt Löwe, Elvira Mayordomo:
Computability in Europe 2010. J. Log. Comput. 25(4): 983-985 (2015) - [j28]Elodie Laine, Alessandra Carbone:
Local Geometry and Evolutionary Conservation of Protein Surfaces Reveal the Multiple Recognition Patches in Protein-Protein Interactions. PLoS Comput. Biol. 11(12) (2015) - 2014
- [j27]Raphaël Champeimont, Alessandra Carbone:
SPoRE: a mathematical model to predict double strand breaks and axis protein sites in meiosis. BMC Bioinform. 15: 391 (2014) - [p1]Alessandra Carbone:
Extracting Coevolving Characters from a Tree of Species. Discrete and Topological Models in Molecular Biology 2014: 45-65 - 2013
- [j26]Guénola Drillon, Alessandra Carbone, Gilles Fischer:
Combinatorics of chromosomal rearrangements based on synteny blocks and synteny packs. J. Log. Comput. 23(4): 815-838 (2013) - [j25]Anne Lopes, Sophie Sacquin-Mora, Viktoriya Dimitrova, Elodie Laine, Yann Ponty, Alessandra Carbone:
Protein-Protein Interactions in a Crowded Environment: An Analysis via Cross-Docking Simulations and Evolutionary Information. PLoS Comput. Biol. 9(12) (2013) - [c4]Elodie Laine, Alessandra Carbone:
Identification of Protein Interaction Partners from Shape Complementarity Molecular Cross-Docking. ICIAP Workshops 2013: 318-325 - 2012
- [j24]Linda Dib, Alessandra Carbone:
CLAG: an unsupervised non hierarchical clustering algorithm handling biological data. BMC Bioinform. 13: 194 (2012) - 2011
- [j23]Juliana S. Bernardes, Alessandra Carbone, Gerson Zaverucha:
A discriminative method for family-based protein remote homology detection that combines inductive logic programming and propositional models. BMC Bioinform. 12: 83 (2011) - [j22]Alessandra Carbone, Linda Dib:
Co-evolution and information signals in biological sequences. Theor. Comput. Sci. 412(23): 2486-2495 (2011) - 2010
- [j21]Anthony Mathelier, Alessandra Carbone:
MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data. Bioinform. 26(18): 2226-2234 (2010) - [j20]Alessandra Carbone:
A new mapping between combinatorial proofs and sequent calculus proofs read out from logical flow graphs. Inf. Comput. 208(5): 500-509 (2010)
2000 – 2009
- 2009
- [j19]Alessandra Carbone:
Logical structures and genus of proofs. Ann. Pure Appl. Log. 161(2): 139-149 (2009) - [j18]Stefan Engelen, Ladislas A. Trojan, Sophie Sacquin-Mora, Richard Lavery, Alessandra Carbone:
Joint Evolutionary Trees: A Large-Scale Method To Predict Protein Interfaces Based on Sequence Sampling. PLoS Comput. Biol. 5(1) (2009) - [j17]Julie Baussand, Alessandra Carbone:
A Combinatorial Approach to Detect Coevolved Amino Acid Networks in Protein Families of Variable Divergence. PLoS Comput. Biol. 5(9) (2009) - [c3]Alessandra Carbone, Stefan Engelen:
Information Content of Sets of Biological Sequences Revisited. Algorithmic Bioprocesses 2009: 31-42 - [c2]Alessandra Carbone, Linda Dib:
Co-evolution and Information Signals in Biological Sequences. TAMC 2009: 6-17 - 2007
- [j16]Julie Baussand, Alessandra Carbone:
Chronique : Métagénomique bactérienne et virale. Tech. Sci. Informatiques 26(1-2): 217-227 (2007) - 2006
- [j15]Alessandra Carbone:
Group Cancellation and Resolution. Stud Logica 82(1): 73-93 (2006) - [e1]Alessandra Carbone, Niles A. Pierce:
DNA Computing, 11th International Workshop on DNA Computing, DNA11, London, ON, Canada, June 6-9, 2005. Revised Selected Papers. Lecture Notes in Computer Science 3892, Springer 2006, ISBN 3-540-34161-7 [contents] - 2004
- [j14]Alessandra Carbone, Chengde Mao, Pamela E. Constantinou, Baoquan Ding, Jens Kopatsch, William B. Sherman, Nadrian C. Seeman:
3D Fractal DNA Assembly from Coding, Geometry and Protection. Nat. Comput. 3(3): 235-252 (2004) - [c1]Alessandra Carbone, Nadrian C. Seeman:
Molecular Tiling and DNA Self-assembly. Aspects of Molecular Computing 2004: 61-83 - 2003
- [j13]Alessandra Carbone, Andrei Yu. Zinovyev, François Képès:
Codon adaptation index as a measure of dominating codon bias. Bioinform. 19(16): 2005-2015 (2003) - [j12]Alessandra Carbone, Nadrian C. Seeman:
Coding and geometrical shapes in nanostructures: A fractal DNA-assembly. Nat. Comput. 2(2): 133-151 (2003) - [j11]Alessandra Carbone, Misha Gromov:
Functional labels and syntactic entropy on DNA strings and proteins. Theor. Comput. Sci. 303(1): 35-51 (2003) - 2002
- [j10]Alessandra Carbone:
The Cost of A Cycle Is A Square. J. Symb. Log. 67(1): 35-60 (2002) - [j9]Alessandra Carbone:
Streams and strings in formal proofs. Theor. Comput. Sci. 288(1): 45-83 (2002) - 2000
- [j8]Alessandra Carbone:
Quantified Propositional Logic and the Number of Lines of Tree-Like Proofs. Stud Logica 64(3): 315-321 (2000) - [j7]Alessandra Carbone, S. Semmes:
Looking From The Inside And From The Outside. Synth. 125(3): 385-416 (2000)
1990 – 1999
- 1999
- [j6]Alessandra Carbone:
Turning Cycles into Spirals. Ann. Pure Appl. Log. 96(1-3): 57-73 (1999) - [j5]Alessandra Carbone:
Duplication of Directed Graphs and Exponential Blow Up of Proofs. Ann. Pure Appl. Log. 100(1-3): 1-67 (1999) - 1997
- [j4]Alessandra Carbone:
Interpolants, Cut Elimination and Flow Graphs for the Propositional Calculus. Ann. Pure Appl. Log. 83(3): 249-299 (1997) - 1991
- [j3]Alessandra Carbone:
Provable Fixed Points in I Δ0 + Ω1. Notre Dame J. Formal Log. 32(4): 562-572 (1991) - 1990
- [j2]Alessandra Carbone, Franco Montagna:
Much shorter proofs: A bimodal investigation. Math. Log. Q. 36(1): 47-66 (1990)
1980 – 1989
- 1989
- [j1]Alessandra Carbone, Franco Montagna:
Rosser Orderings in Bimodal Logics. Math. Log. Q. 35(4): 343-358 (1989)
Coauthor Index
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last updated on 2024-10-07 22:16 CEST by the dblp team
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